Wall clock time and date at job start Sat Apr 11 2020 05:51:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47427 * 2 1 4 4 H 1.08998 * 109.47163 * 302.41590 * 3 2 1 5 5 C 1.53001 * 109.47054 * 62.40968 * 3 2 1 6 6 C 1.52998 * 109.47208 * 187.04706 * 5 3 2 7 7 C 1.52999 * 109.47093 * 171.21757 * 6 5 3 8 8 C 1.52995 * 109.47334 * 291.21800 * 6 5 3 9 9 C 1.50693 * 109.47489 * 182.41422 * 3 2 1 10 10 O 1.21289 * 119.99773 * 280.60330 * 9 3 2 11 11 N 1.34773 * 120.00429 * 100.60352 * 9 3 2 12 12 C 1.46500 * 120.00402 * 180.02562 * 11 9 3 13 13 C 1.53002 * 109.47311 * 180.02562 * 12 11 9 14 14 C 1.53942 * 113.72732 * 271.72479 * 13 12 11 15 15 N 1.47965 * 86.17838 * 221.92197 * 14 13 12 16 16 C 1.46896 * 111.00161 * 137.58579 * 15 14 13 17 17 C 1.50697 * 109.47262 * 70.63770 * 16 15 14 18 18 O 1.21288 * 120.00311 * 359.97438 * 17 16 15 19 19 N 1.34780 * 119.99960 * 179.97438 * 17 16 15 20 20 C 1.37097 * 119.99825 * 179.97438 * 19 17 16 21 21 H 1.07990 * 120.00069 * 0.02562 * 20 19 17 22 22 C 1.38954 * 119.99540 * 180.02562 * 20 19 17 23 23 N 1.31404 * 120.00205 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 119.99771 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.46876 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.46814 * 119.99984 * 24 22 20 27 27 H 1.48495 * 109.47350 * 239.99998 * 24 22 20 28 28 C 1.47961 * 90.76217 * 24.69051 * 15 14 13 29 29 H 1.08997 * 109.47250 * 301.18961 * 1 2 3 30 30 H 1.09001 * 109.47064 * 61.18640 * 1 2 3 31 31 H 1.08998 * 109.47237 * 181.18570 * 1 2 3 32 32 H 1.09008 * 109.47359 * 239.99774 * 2 1 3 33 33 H 1.08999 * 109.47242 * 120.00284 * 2 1 3 34 34 H 1.09005 * 109.47181 * 67.04822 * 5 3 2 35 35 H 1.08999 * 109.47427 * 307.04989 * 5 3 2 36 36 H 1.08997 * 109.46941 * 51.22061 * 6 5 3 37 37 H 1.09001 * 109.47223 * 59.99895 * 7 6 5 38 38 H 1.09004 * 109.47536 * 180.02562 * 7 6 5 39 39 H 1.09000 * 109.47416 * 299.99929 * 7 6 5 40 40 H 1.09004 * 109.47552 * 184.18308 * 8 6 5 41 41 H 1.09005 * 109.47562 * 304.18219 * 8 6 5 42 42 H 1.08997 * 109.47296 * 64.18130 * 8 6 5 43 43 H 0.97002 * 120.00180 * 359.97438 * 11 9 3 44 44 H 1.09004 * 109.46728 * 299.99240 * 12 11 9 45 45 H 1.08997 * 109.47291 * 59.98990 * 12 11 9 46 46 H 1.08996 * 112.93948 * 43.42676 * 13 12 11 47 47 H 1.09000 * 113.75881 * 336.23747 * 14 13 12 48 48 H 1.08994 * 113.76274 * 107.60489 * 14 13 12 49 49 H 1.08998 * 109.47207 * 190.64291 * 16 15 14 50 50 H 1.09008 * 109.46985 * 310.63674 * 16 15 14 51 51 H 0.96997 * 120.00000 * 0.02562 * 19 17 16 52 52 H 0.97006 * 120.00550 * 180.02562 * 23 22 20 53 53 H 1.09006 * 113.75453 * 220.99515 * 28 15 14 54 54 H 1.08997 * 113.75994 * 89.63337 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6418 1.9686 -0.8675 5 6 1.5802 2.1460 1.2785 6 6 1.9374 3.6316 1.1998 7 6 1.2893 4.3746 2.3697 8 6 3.4569 3.7953 1.2707 9 6 3.5458 1.4429 -0.0598 10 8 4.1927 1.2353 0.9449 11 7 4.1737 1.6739 -1.2298 12 6 5.6376 1.6738 -1.2880 13 6 6.0910 1.9600 -2.7210 14 6 6.2228 0.6981 -3.5928 15 7 7.4700 1.3048 -4.1083 16 6 8.5377 0.3017 -4.2168 17 6 8.2239 -0.6459 -5.3458 18 8 7.2103 -0.5003 -5.9958 19 7 9.0696 -1.6552 -5.6332 20 6 8.7838 -2.5176 -6.6600 21 1 7.8813 -2.3879 -7.2386 22 6 9.6555 -3.5584 -6.9559 23 7 10.7534 -3.7165 -6.2514 24 14 9.2665 -4.7331 -8.3554 25 1 7.9813 -4.3412 -8.9877 26 1 10.3528 -4.6756 -9.3662 27 1 9.1565 -6.1157 -7.8250 28 6 7.6163 2.1032 -2.8713 29 1 -0.3633 0.5322 0.8791 30 1 -0.3633 0.4953 -0.9004 31 1 -0.3633 -1.0274 0.0213 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 2.0775 1.6978 2.1388 35 1 0.5010 2.0369 1.3852 36 1 1.5710 4.0440 0.2597 37 1 1.6556 3.9622 3.3098 38 1 1.5433 5.4331 2.3134 39 1 0.2067 4.2581 2.3192 40 1 3.7077 4.8559 1.2895 41 1 3.8321 3.3172 2.1756 42 1 3.9137 3.3294 0.3976 43 1 3.6564 1.8396 -2.0334 44 1 6.0277 2.4445 -0.6232 45 1 6.0136 0.6997 -0.9752 46 1 5.5262 2.7640 -3.1927 47 1 6.3829 -0.2160 -3.0209 48 1 5.4393 0.5994 -4.3440 49 1 9.4864 0.8008 -4.4144 50 1 8.6083 -0.2563 -3.2830 51 1 9.8800 -1.7719 -5.1132 52 1 11.3622 -4.4429 -6.4582 53 1 7.9460 3.1274 -3.0461 54 1 8.1839 1.6002 -2.0884 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567846616.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:51:16 Heat of formation + Delta-G solvation = -85.638850 kcal Electronic energy + Delta-G solvation = -29885.627584 eV Core-core repulsion = 25856.670408 eV Total energy + Delta-G solvation = -4028.957176 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.62172 -41.03442 -39.55533 -37.55201 -36.02925 -35.67589 -35.13546 -33.34135 -32.12986 -30.00312 -28.63043 -28.00592 -27.07860 -26.82760 -25.83018 -23.93239 -22.50035 -21.36896 -21.07578 -20.92336 -20.27860 -19.90048 -18.27970 -17.85842 -17.37553 -16.84291 -16.65327 -16.55659 -16.29744 -15.95281 -15.78901 -15.53021 -15.17530 -15.08386 -14.64763 -14.52044 -14.32664 -14.04304 -13.82316 -13.67256 -13.55690 -13.42432 -13.20479 -13.04677 -12.88701 -12.86797 -12.79969 -12.57515 -12.44131 -12.31161 -12.13353 -12.05841 -11.81622 -11.72321 -11.66451 -11.53404 -11.51531 -11.48647 -11.15208 -10.62395 -10.35398 -10.05659 -10.04054 -9.68962 -8.49047 -5.97998 1.34703 1.39877 1.54247 1.70471 2.02003 2.21569 2.27351 2.81332 3.17344 3.25836 3.44754 3.62998 3.69307 3.78873 3.92291 4.08672 4.17502 4.19840 4.20682 4.27847 4.29636 4.38014 4.48010 4.49291 4.50747 4.52226 4.62446 4.64156 4.69947 4.77291 4.81919 4.84303 4.88734 4.89935 4.96127 5.00538 5.10803 5.15638 5.17975 5.20799 5.25258 5.34815 5.37485 5.40081 5.42090 5.47727 5.49731 5.59084 5.88557 6.06390 6.57261 6.59806 7.10078 7.31853 7.53043 8.08469 8.68638 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.017447 B = 0.001935 C = 0.001808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1604.477307 B =14463.422159 C =15480.216301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.113 4.113 3 C -0.102 4.102 4 H 0.111 0.889 5 C -0.100 4.100 6 C -0.098 4.098 7 C -0.144 4.144 8 C -0.150 4.150 9 C 0.522 3.478 10 O -0.581 6.581 11 N -0.724 5.724 12 C 0.136 3.864 13 C -0.103 4.103 14 C 0.019 3.981 15 N -0.481 5.481 16 C 0.022 3.978 17 C 0.440 3.560 18 O -0.617 6.617 19 N -0.575 5.575 20 C -0.333 4.333 21 H 0.079 0.921 22 C -0.014 4.014 23 N -0.921 5.921 24 Si 0.994 3.006 25 H -0.273 1.273 26 H -0.270 1.270 27 H -0.271 1.271 28 C 0.014 3.986 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.058 0.942 32 H 0.062 0.938 33 H 0.052 0.948 34 H 0.053 0.947 35 H 0.094 0.906 36 H 0.082 0.918 37 H 0.046 0.954 38 H 0.057 0.943 39 H 0.067 0.933 40 H 0.051 0.949 41 H 0.038 0.962 42 H 0.053 0.947 43 H 0.413 0.587 44 H 0.075 0.925 45 H 0.051 0.949 46 H 0.121 0.879 47 H 0.056 0.944 48 H 0.071 0.929 49 H 0.108 0.892 50 H 0.073 0.927 51 H 0.395 0.605 52 H 0.278 0.722 53 H 0.111 0.889 54 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.715 15.025 16.511 28.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.151 4.151 3 C -0.123 4.123 4 H 0.129 0.871 5 C -0.137 4.137 6 C -0.116 4.116 7 C -0.201 4.201 8 C -0.208 4.208 9 C 0.310 3.690 10 O -0.461 6.461 11 N -0.376 5.376 12 C 0.012 3.988 13 C -0.122 4.122 14 C -0.110 4.110 15 N -0.203 5.203 16 C -0.110 4.110 17 C 0.228 3.772 18 O -0.504 6.504 19 N -0.213 5.213 20 C -0.462 4.462 21 H 0.097 0.903 22 C -0.214 4.214 23 N -0.562 5.562 24 Si 0.817 3.183 25 H -0.197 1.197 26 H -0.195 1.195 27 H -0.196 1.196 28 C -0.115 4.115 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.112 0.888 36 H 0.100 0.900 37 H 0.065 0.935 38 H 0.076 0.924 39 H 0.086 0.914 40 H 0.071 0.929 41 H 0.057 0.943 42 H 0.072 0.928 43 H 0.249 0.751 44 H 0.093 0.907 45 H 0.069 0.931 46 H 0.139 0.861 47 H 0.074 0.926 48 H 0.089 0.911 49 H 0.126 0.874 50 H 0.091 0.909 51 H 0.229 0.771 52 H 0.087 0.913 53 H 0.129 0.871 54 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -17.725 15.141 16.117 28.341 hybrid contribution 0.802 -1.472 -0.136 1.681 sum -16.923 13.670 15.982 26.994 Atomic orbital electron populations 1.21810 0.93301 1.02443 1.03005 1.21420 0.97854 0.93793 1.02011 1.21457 0.89861 0.98998 1.01991 0.87062 1.21658 1.02116 0.94329 0.95635 1.21187 0.95020 0.95306 1.00074 1.21803 1.00914 0.99966 0.97441 1.22139 0.96483 1.00744 1.01417 1.20923 0.91372 0.74162 0.82498 1.90702 1.68788 1.50802 1.35776 1.46121 1.07370 1.72571 1.11515 1.21253 0.80425 1.01309 0.95857 1.23130 0.97235 0.98157 0.93712 1.23821 0.94178 0.96171 0.96796 1.68405 1.02341 1.16143 1.33460 1.22355 0.98287 0.94004 0.96309 1.20747 0.84889 0.83585 0.88023 1.90479 1.29280 1.75327 1.55267 1.41967 1.22282 1.25963 1.31040 1.19692 1.07751 1.08071 1.10704 0.90329 1.26066 0.94947 0.99323 1.01070 1.69677 1.11998 1.33201 1.41302 0.84858 0.78307 0.77586 0.77505 1.19749 1.19537 1.19582 1.24084 0.95412 1.00979 0.90993 0.91417 0.91382 0.92336 0.91938 0.92872 0.92828 0.88800 0.90015 0.93513 0.92419 0.91447 0.92946 0.94277 0.92798 0.75065 0.90707 0.93099 0.86066 0.92619 0.91058 0.87354 0.90917 0.77079 0.91288 0.87108 0.89897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 9.66 71.98 0.70 -0.79 16 2 C -0.11 -1.63 5.41 30.59 0.17 -1.46 16 3 C -0.10 -1.42 2.21 -11.54 -0.03 -1.45 16 4 H 0.11 1.02 8.00 -2.39 -0.02 1.00 16 5 C -0.10 -1.36 4.09 30.59 0.13 -1.24 16 6 C -0.10 -1.28 2.89 -10.80 -0.03 -1.31 16 7 C -0.14 -1.62 9.18 71.98 0.66 -0.96 16 8 C -0.15 -2.67 7.67 71.98 0.55 -2.12 16 9 C 0.52 10.49 3.84 87.66 0.34 10.83 16 10 O -0.58 -16.37 14.44 -3.06 -0.04 -16.42 16 11 N -0.72 -12.34 5.19 -463.06 -2.40 -14.74 16 12 C 0.14 2.60 5.53 86.38 0.48 3.08 16 13 C -0.10 -2.01 3.94 -10.15 -0.04 -2.05 16 14 C 0.02 0.57 6.31 86.41 0.55 1.11 16 15 N -0.48 -15.13 5.95 -912.34 -5.43 -20.55 16 16 C 0.02 0.77 5.31 85.56 0.45 1.23 16 17 C 0.44 21.33 7.59 87.66 0.67 21.99 16 18 O -0.62 -34.49 15.12 -3.05 -0.05 -34.53 16 19 N -0.58 -30.05 5.29 -306.99 -1.62 -31.68 16 20 C -0.33 -19.14 9.68 84.04 0.81 -18.32 16 21 H 0.08 4.82 7.16 -2.92 -0.02 4.80 16 22 C -0.01 -0.78 5.50 84.93 0.47 -0.31 16 23 N -0.92 -50.22 13.05 21.66 0.28 -49.94 16 24 Si 0.99 43.30 29.55 68.60 2.03 45.33 16 25 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 26 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 27 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 28 C 0.01 0.29 7.54 86.41 0.65 0.95 16 29 H 0.07 0.58 6.28 -2.39 -0.02 0.56 16 30 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 33 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.05 1.01 7.62 -2.38 -0.02 0.99 16 35 H 0.09 0.91 6.12 -2.39 -0.01 0.90 16 36 H 0.08 0.86 8.09 -2.39 -0.02 0.85 16 37 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 38 H 0.06 0.61 8.14 -2.38 -0.02 0.59 16 39 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 40 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 41 H 0.04 0.86 7.69 -2.38 -0.02 0.85 16 42 H 0.05 1.03 4.52 -2.39 -0.01 1.02 16 43 H 0.41 5.12 8.40 -92.71 -0.78 4.35 16 44 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 45 H 0.05 1.18 7.84 -2.39 -0.02 1.16 16 46 H 0.12 2.02 8.14 -2.39 -0.02 2.00 16 47 H 0.06 1.74 7.53 -2.39 -0.02 1.72 16 48 H 0.07 2.38 8.09 -2.39 -0.02 2.36 16 49 H 0.11 3.41 8.14 -2.39 -0.02 3.39 16 50 H 0.07 2.27 7.69 -2.38 -0.02 2.25 16 51 H 0.40 19.67 7.90 -92.71 -0.73 18.94 16 52 H 0.28 14.12 8.31 -92.70 -0.77 13.35 16 53 H 0.11 1.93 8.14 -2.38 -0.02 1.91 16 54 H 0.08 1.57 7.75 -2.39 -0.02 1.56 16 Total: -1.00 -73.56 422.95 -1.34 -74.90 By element: Atomic # 1 Polarization: 39.09 SS G_CDS: -0.62 Total: 38.46 kcal Atomic # 6 Polarization: 2.65 SS G_CDS: 6.51 Total: 9.16 kcal Atomic # 7 Polarization: -107.74 SS G_CDS: -9.17 Total: -116.91 kcal Atomic # 8 Polarization: -50.86 SS G_CDS: -0.09 Total: -50.95 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.33 kcal Total: -73.56 -1.34 -74.90 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567846616.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.738 kcal (2) G-P(sol) polarization free energy of solvation -73.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds