Wall clock time and date at job start Sat Apr 11 2020 05:51:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47459 * 2 1 4 4 C 1.53010 * 109.46641 * 240.00058 * 2 1 3 5 5 C 1.53003 * 109.47581 * 120.00708 * 2 1 3 6 6 C 1.50700 * 109.47011 * 59.99193 * 5 2 1 7 7 O 1.21277 * 120.00023 * 0.02562 * 6 5 2 8 8 N 1.34780 * 120.00003 * 180.02562 * 6 5 2 9 9 C 1.46491 * 120.00091 * 180.02562 * 8 6 5 10 10 C 1.50702 * 109.46957 * 179.97438 * 9 8 6 11 11 O 1.21283 * 120.00262 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99928 * 179.72354 * 10 9 8 13 13 C 1.46499 * 120.00199 * 180.27479 * 12 10 9 14 14 H 1.09001 * 109.46948 * 35.00281 * 13 12 10 15 15 C 1.52999 * 109.47481 * 154.99940 * 13 12 10 16 16 C 1.52995 * 109.47507 * 179.97438 * 15 13 12 17 17 C 1.52997 * 109.47319 * 300.00556 * 16 15 13 18 18 H 1.08993 * 109.47268 * 299.99783 * 17 16 15 19 19 N 1.46504 * 109.47320 * 179.97438 * 17 16 15 20 20 C 1.36936 * 120.00215 * 154.99636 * 19 17 16 21 21 H 1.08004 * 119.99897 * 0.02562 * 20 19 17 22 22 C 1.38811 * 120.00139 * 180.02562 * 20 19 17 23 23 N 1.31623 * 119.99720 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 120.00112 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47397 * 89.99689 * 24 22 20 26 26 H 1.48504 * 109.46923 * 209.99981 * 24 22 20 27 27 H 1.48501 * 109.46563 * 329.99664 * 24 22 20 28 28 C 1.53005 * 109.47302 * 59.99629 * 17 16 15 29 29 C 1.52997 * 109.47288 * 275.00460 * 13 12 10 30 30 H 1.09004 * 109.46610 * 299.99825 * 1 2 3 31 31 H 1.09003 * 109.47277 * 59.99425 * 1 2 3 32 32 H 1.09001 * 109.47486 * 179.97438 * 1 2 3 33 33 H 1.08994 * 109.46974 * 180.02562 * 3 2 1 34 34 H 1.09003 * 109.47345 * 300.00533 * 3 2 1 35 35 H 1.09004 * 109.47066 * 60.00455 * 3 2 1 36 36 H 1.09001 * 109.47172 * 300.00182 * 4 2 1 37 37 H 1.09003 * 109.46863 * 60.00263 * 4 2 1 38 38 H 1.09000 * 109.46753 * 179.97438 * 4 2 1 39 39 H 1.08998 * 109.46547 * 299.99827 * 5 2 1 40 40 H 1.08994 * 109.47099 * 179.97438 * 5 2 1 41 41 H 0.97003 * 119.99349 * 0.02562 * 8 6 5 42 42 H 1.09004 * 109.47166 * 60.00164 * 9 8 6 43 43 H 1.08994 * 109.47507 * 299.99870 * 9 8 6 44 44 H 0.97000 * 120.00317 * 0.28382 * 12 10 9 45 45 H 1.09000 * 109.47556 * 300.00768 * 15 13 12 46 46 H 1.09007 * 109.46426 * 60.00536 * 15 13 12 47 47 H 1.09001 * 109.46891 * 60.00360 * 16 15 13 48 48 H 1.09000 * 109.47220 * 179.97438 * 16 15 13 49 49 H 0.97007 * 120.00036 * 335.00170 * 19 17 16 50 50 H 0.96999 * 119.99614 * 180.02562 * 23 22 20 51 51 H 1.09001 * 109.47005 * 60.00136 * 28 17 16 52 52 H 1.09000 * 109.46851 * 179.97438 * 28 17 16 53 53 H 1.08993 * 109.47268 * 299.99834 * 29 13 12 54 54 H 1.09006 * 109.47495 * 60.00048 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2494 5 6 2.0401 -0.7214 1.2491 6 6 1.5376 -2.1422 1.2491 7 8 0.8406 -2.5388 0.3393 8 7 1.8629 -2.9720 2.2601 9 6 1.3749 -4.3533 2.2597 10 6 1.8773 -5.0638 3.4902 11 8 2.5739 -4.4742 4.2890 12 7 1.5474 -6.3526 3.7060 13 6 2.0308 -7.0415 4.9051 14 1 2.0674 -6.3391 5.7378 15 6 1.0826 -8.1918 5.2497 16 6 1.5877 -8.9117 6.5016 17 6 2.9892 -9.4669 6.2401 18 1 2.9523 -10.1691 5.4074 19 7 3.4732 -10.1557 7.4392 20 6 4.4174 -11.1413 7.3285 21 1 4.8057 -11.4105 6.3573 22 6 4.8756 -11.7943 8.4645 23 7 4.4027 -11.4658 9.6481 24 14 6.1642 -13.1382 8.3136 25 1 7.5190 -12.5386 8.4143 26 1 5.9781 -14.1272 9.4057 27 1 6.0197 -13.8172 7.0009 28 6 3.9375 -8.3166 5.8957 29 6 3.4324 -7.5967 4.6443 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 3.1300 1.4423 -0.0005 34 1 1.6767 1.9564 -0.8899 35 1 1.6768 1.9563 0.8901 36 1 1.6765 -1.7489 -1.2494 37 1 1.6765 -0.2074 -2.1393 38 1 3.1299 -0.7209 -1.2496 39 1 1.6768 -0.2076 2.1391 40 1 3.1300 -0.7217 1.2488 41 1 2.4201 -2.6546 2.9879 42 1 1.7389 -4.8670 1.3699 43 1 0.2850 -4.3537 2.2591 44 1 0.9901 -6.8241 3.0673 45 1 0.0840 -7.7963 5.4355 46 1 1.0461 -8.8943 4.4169 47 1 1.6247 -8.2095 7.3345 48 1 0.9119 -9.7308 6.7473 49 1 3.1247 -9.9137 8.3115 50 1 4.7231 -11.9219 10.4420 51 1 3.9744 -7.6144 6.7285 52 1 4.9360 -8.7122 5.7099 53 1 3.3959 -8.2991 3.8117 54 1 4.1080 -6.7772 4.3989 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568114248.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:51:23 Heat of formation + Delta-G solvation = -114.836979 kcal Electronic energy + Delta-G solvation = -29393.720651 eV Core-core repulsion = 25363.497349 eV Total energy + Delta-G solvation = -4030.223302 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.49566 -40.79688 -39.33614 -37.52757 -36.42477 -35.37396 -34.68575 -32.54583 -31.68962 -30.63382 -29.08000 -28.06320 -28.00115 -27.35691 -25.45960 -23.65348 -22.63754 -21.69012 -21.55480 -20.92074 -19.95466 -19.13482 -18.53673 -17.69515 -17.20835 -16.97930 -16.91757 -16.44902 -16.07305 -15.77259 -15.40462 -15.36180 -15.21354 -15.15465 -15.04569 -14.75431 -14.34361 -13.98092 -13.85913 -13.64718 -13.43081 -13.16668 -13.08308 -12.93350 -12.91930 -12.82132 -12.63802 -12.44432 -12.31667 -12.18940 -12.12948 -12.02400 -12.01218 -11.66493 -11.61139 -11.50675 -11.46635 -11.21097 -11.01999 -10.82667 -10.50054 -10.17598 -10.01789 -8.98770 -7.93316 -5.21221 1.46948 1.48430 1.49371 1.56621 1.66605 1.79601 2.46407 2.57037 3.39739 3.57035 3.74037 3.77760 3.84944 3.89892 3.93069 3.96816 4.27511 4.28815 4.35689 4.38355 4.40863 4.42961 4.53631 4.60624 4.62549 4.65613 4.67375 4.70325 4.86344 4.87562 4.89616 5.00669 5.02181 5.10819 5.12325 5.14469 5.18641 5.20446 5.26068 5.28661 5.37184 5.41036 5.45619 5.52479 5.55941 5.56388 5.65007 5.69377 6.29621 6.48164 6.51547 7.15962 7.25627 7.35108 8.13216 8.35102 9.30331 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.032081 B = 0.001561 C = 0.001537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.587199 B =17932.548139 C =18216.603607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.052 4.052 3 C -0.139 4.139 4 C -0.151 4.151 5 C -0.131 4.131 6 C 0.515 3.485 7 O -0.558 6.558 8 N -0.721 5.721 9 C 0.105 3.895 10 C 0.509 3.491 11 O -0.575 6.575 12 N -0.704 5.704 13 C 0.154 3.846 14 H 0.068 0.932 15 C -0.106 4.106 16 C -0.114 4.114 17 C 0.171 3.829 18 H 0.047 0.953 19 N -0.739 5.739 20 C -0.237 4.237 21 H 0.075 0.925 22 C -0.078 4.078 23 N -0.971 5.971 24 Si 0.970 3.030 25 H -0.290 1.290 26 H -0.296 1.296 27 H -0.268 1.268 28 C -0.123 4.123 29 C -0.112 4.112 30 H 0.053 0.947 31 H 0.051 0.949 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.057 0.943 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.051 0.949 38 H 0.052 0.948 39 H 0.110 0.890 40 H 0.109 0.891 41 H 0.413 0.587 42 H 0.110 0.890 43 H 0.112 0.888 44 H 0.420 0.580 45 H 0.089 0.911 46 H 0.088 0.912 47 H 0.053 0.947 48 H 0.066 0.934 49 H 0.371 0.629 50 H 0.250 0.750 51 H 0.039 0.961 52 H 0.039 0.961 53 H 0.075 0.925 54 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.972 23.244 -21.598 33.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.053 4.053 3 C -0.197 4.197 4 C -0.209 4.209 5 C -0.170 4.170 6 C 0.303 3.697 7 O -0.438 6.438 8 N -0.376 5.376 9 C -0.022 4.022 10 C 0.296 3.704 11 O -0.455 6.455 12 N -0.356 5.356 13 C 0.049 3.951 14 H 0.086 0.914 15 C -0.144 4.144 16 C -0.153 4.153 17 C 0.063 3.937 18 H 0.065 0.935 19 N -0.379 5.379 20 C -0.369 4.369 21 H 0.093 0.907 22 C -0.270 4.270 23 N -0.622 5.622 24 Si 0.799 3.201 25 H -0.218 1.218 26 H -0.223 1.223 27 H -0.193 1.193 28 C -0.164 4.164 29 C -0.151 4.151 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.070 0.930 38 H 0.071 0.929 39 H 0.128 0.872 40 H 0.127 0.873 41 H 0.251 0.749 42 H 0.128 0.872 43 H 0.130 0.870 44 H 0.257 0.743 45 H 0.108 0.892 46 H 0.106 0.894 47 H 0.071 0.929 48 H 0.084 0.916 49 H 0.203 0.797 50 H 0.058 0.942 51 H 0.058 0.942 52 H 0.058 0.942 53 H 0.094 0.906 54 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -9.876 23.219 -21.763 33.321 hybrid contribution 0.955 -0.944 0.952 1.646 sum -8.921 22.275 -20.811 31.762 Atomic orbital electron populations 1.22063 0.94785 1.02724 1.01252 1.20295 0.95824 0.95433 0.93733 1.21867 1.01359 0.94086 1.02362 1.22068 1.00341 1.01623 0.96830 1.21847 1.03482 0.90595 1.01106 1.21116 0.79479 0.88521 0.80566 1.90591 1.39017 1.77912 1.36266 1.45880 1.54227 1.11099 1.26400 1.21079 1.01663 0.83453 0.96013 1.20860 0.79690 0.82466 0.87398 1.90716 1.39705 1.66884 1.48184 1.45837 1.53019 1.11382 1.25365 1.20852 0.93311 0.93757 0.87185 0.91418 1.21655 0.98589 0.96124 0.98072 1.21639 0.95839 0.99661 0.98124 1.20508 0.92295 0.91833 0.89051 0.93496 1.42675 1.48029 1.42212 1.04944 1.19633 1.13919 1.10208 0.93127 0.90704 1.25530 1.03121 1.03110 0.95210 1.69819 1.48249 1.46328 0.97776 0.85189 0.78890 0.78887 0.77120 1.21782 1.22261 1.19302 1.22016 0.99542 0.97969 0.96866 1.21752 0.96247 0.99248 0.97878 0.92814 0.93011 0.91908 0.91933 0.92349 0.91849 0.91917 0.93002 0.92915 0.87151 0.87270 0.74862 0.87249 0.86982 0.74264 0.89239 0.89379 0.92856 0.91562 0.79737 0.94165 0.94226 0.94192 0.90608 0.93141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.14 8.18 71.98 0.59 -1.55 16 2 C -0.05 -0.63 0.77 -52.18 -0.04 -0.67 16 3 C -0.14 -1.21 8.47 71.98 0.61 -0.60 16 4 C -0.15 -2.18 8.18 71.99 0.59 -1.59 16 5 C -0.13 -1.39 4.77 29.85 0.14 -1.25 16 6 C 0.51 8.08 7.24 87.66 0.63 8.71 16 7 O -0.56 -11.68 11.35 -3.02 -0.03 -11.71 16 8 N -0.72 -10.68 5.53 -466.81 -2.58 -13.26 16 9 C 0.11 1.42 6.15 85.64 0.53 1.94 16 10 C 0.51 9.39 7.86 87.66 0.69 10.07 16 11 O -0.58 -15.39 15.33 -3.04 -0.05 -15.43 16 12 N -0.70 -10.95 5.08 -442.54 -2.25 -13.20 16 13 C 0.15 3.39 2.45 44.99 0.11 3.50 16 14 H 0.07 1.84 7.58 -2.39 -0.02 1.83 16 15 C -0.11 -2.11 5.39 30.59 0.16 -1.94 16 16 C -0.11 -3.36 5.39 30.59 0.16 -3.20 16 17 C 0.17 6.44 2.77 44.99 0.12 6.57 16 18 H 0.05 1.77 8.08 -2.39 -0.02 1.75 16 19 N -0.74 -37.01 5.12 -322.94 -1.65 -38.67 16 20 C -0.24 -13.12 9.93 84.03 0.83 -12.28 16 21 H 0.08 3.98 7.83 -2.91 -0.02 3.96 16 22 C -0.08 -4.48 5.50 84.86 0.47 -4.01 16 23 N -0.97 -59.75 13.06 21.65 0.28 -59.47 16 24 Si 0.97 46.29 29.55 68.60 2.03 48.32 16 25 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 26 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 27 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 28 C -0.12 -4.36 5.50 30.58 0.17 -4.19 16 29 C -0.11 -2.97 5.49 30.58 0.17 -2.80 16 30 H 0.05 0.66 8.14 -2.38 -0.02 0.64 16 31 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.06 1.18 5.51 -2.39 -0.01 1.17 16 33 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 34 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 35 H 0.06 0.46 8.14 -2.38 -0.02 0.44 16 36 H 0.06 1.20 5.51 -2.39 -0.01 1.18 16 37 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 38 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 39 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.41 6.13 7.44 -92.71 -0.69 5.44 16 42 H 0.11 1.28 8.14 -2.38 -0.02 1.26 16 43 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 44 H 0.42 3.60 8.60 -92.71 -0.80 2.80 16 45 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 46 H 0.09 1.46 8.14 -2.38 -0.02 1.44 16 47 H 0.05 1.66 8.14 -2.39 -0.02 1.65 16 48 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 49 H 0.37 20.09 7.80 -92.70 -0.72 19.37 16 50 H 0.25 14.94 8.31 -92.71 -0.77 14.17 16 51 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 52 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 53 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 54 H 0.05 1.43 8.14 -2.38 -0.02 1.41 16 Total: -1.00 -72.43 421.74 0.38 -72.06 By element: Atomic # 1 Polarization: 35.97 SS G_CDS: -1.32 Total: 34.65 kcal Atomic # 6 Polarization: -9.23 SS G_CDS: 5.94 Total: -3.29 kcal Atomic # 7 Polarization: -118.40 SS G_CDS: -6.20 Total: -124.59 kcal Atomic # 8 Polarization: -27.06 SS G_CDS: -0.08 Total: -27.14 kcal Atomic # 14 Polarization: 46.29 SS G_CDS: 2.03 Total: 48.32 kcal Total: -72.43 0.38 -72.06 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568114248.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.779 kcal (2) G-P(sol) polarization free energy of solvation -72.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds