Wall clock time and date at job start Sat Apr 11 2020 05:51:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.46850 * 2 1 4 4 H 1.09000 * 109.47321 * 55.00124 * 3 2 1 5 5 C 1.53001 * 109.46988 * 294.99743 * 3 2 1 6 6 C 1.53001 * 109.46838 * 174.99793 * 3 2 1 7 7 C 1.52996 * 109.47105 * 184.99711 * 6 3 2 8 8 C 1.50703 * 109.47106 * 180.02562 * 7 6 3 9 9 O 1.21282 * 120.00230 * 359.97438 * 8 7 6 10 10 N 1.34783 * 119.99921 * 180.02562 * 8 7 6 11 11 C 1.47527 * 125.63664 * 5.10032 * 10 8 7 12 12 C 1.54905 * 104.78240 * 155.84821 * 11 10 8 13 13 C 1.55159 * 101.61810 * 37.00297 * 12 11 10 14 14 C 1.47019 * 125.64641 * 185.06187 * 10 8 7 15 15 H 1.09000 * 109.88146 * 300.50880 * 14 10 8 16 16 C 1.53000 * 109.88292 * 61.67374 * 14 10 8 17 17 N 1.46896 * 109.47194 * 182.30010 * 16 14 10 18 18 C 1.46906 * 111.00225 * 185.06213 * 17 16 14 19 19 C 1.50693 * 109.47166 * 180.02562 * 18 17 16 20 20 O 1.21291 * 120.00223 * 359.97438 * 19 18 17 21 21 N 1.34774 * 120.00042 * 180.02562 * 19 18 17 22 22 C 1.37101 * 120.00324 * 179.97438 * 21 19 18 23 23 H 1.08003 * 119.99906 * 359.97438 * 22 21 19 24 24 C 1.38948 * 120.00006 * 180.02562 * 22 21 19 25 25 N 1.31411 * 120.00291 * 359.97438 * 24 22 21 26 26 Si 1.86804 * 119.99859 * 179.97438 * 24 22 21 27 27 H 1.48502 * 109.46943 * 359.97438 * 26 24 22 28 28 H 1.48499 * 109.47174 * 119.99643 * 26 24 22 29 29 H 1.48503 * 109.47079 * 240.00005 * 26 24 22 30 30 H 1.09003 * 109.47024 * 60.00241 * 1 2 3 31 31 H 1.08998 * 109.47210 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47367 * 300.00110 * 1 2 3 33 33 H 1.08996 * 109.46868 * 239.99877 * 2 1 3 34 34 H 1.09003 * 109.47024 * 119.99759 * 2 1 3 35 35 H 1.09006 * 109.46755 * 180.02562 * 5 3 2 36 36 H 1.09003 * 109.47187 * 299.99869 * 5 3 2 37 37 H 1.09001 * 109.47102 * 60.00448 * 5 3 2 38 38 H 1.09001 * 109.47355 * 64.99940 * 6 3 2 39 39 H 1.09001 * 109.47323 * 304.99900 * 6 3 2 40 40 H 1.08997 * 109.47096 * 60.00334 * 7 6 3 41 41 H 1.09001 * 109.47184 * 300.00273 * 7 6 3 42 42 H 1.08997 * 110.41005 * 37.01336 * 11 10 8 43 43 H 1.09004 * 110.37236 * 274.66201 * 11 10 8 44 44 H 1.09003 * 111.00266 * 278.90804 * 12 11 10 45 45 H 1.08996 * 111.00399 * 155.10014 * 12 11 10 46 46 H 1.08998 * 110.71473 * 82.84085 * 13 12 11 47 47 H 1.08997 * 110.72198 * 205.93932 * 13 12 11 48 48 H 1.08999 * 109.47417 * 302.30470 * 16 14 10 49 49 H 1.09007 * 109.47353 * 62.30449 * 16 14 10 50 50 H 1.00900 * 110.99668 * 61.11195 * 17 16 14 51 51 H 1.09002 * 109.46459 * 300.00407 * 18 17 16 52 52 H 1.09000 * 109.47050 * 60.00279 * 18 17 16 53 53 H 0.97005 * 119.99884 * 0.02562 * 21 19 18 54 54 H 0.97005 * 119.99885 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 1.6352 2.1265 -1.3074 6 6 3.5648 1.4443 0.1258 7 6 4.0644 2.8850 0.2511 8 6 5.5664 2.8868 0.3744 9 8 6.1771 1.8390 0.3635 10 7 6.2310 4.0529 0.4977 11 6 5.6118 5.3851 0.6327 12 6 6.6837 6.2491 1.3426 13 6 7.9917 5.7104 0.7051 14 6 7.6929 4.2076 0.5207 15 1 8.1125 3.6414 1.3522 16 6 8.2890 3.7168 -0.8002 17 7 9.7530 3.8240 -0.7465 18 6 10.3543 3.4746 -2.0405 19 6 11.8535 3.5954 -1.9468 20 8 12.3703 3.9391 -0.9047 21 7 12.6200 3.3224 -3.0212 22 6 13.9839 3.4327 -2.9361 23 1 14.4441 3.7388 -2.0082 24 6 14.7741 3.1518 -4.0439 25 7 14.2142 2.7798 -5.1731 26 14 16.6324 3.3028 -3.9282 27 1 17.0095 3.7357 -2.5586 28 1 17.2552 1.9869 -4.2209 29 1 17.1098 4.3065 -4.9130 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.9989 3.1541 -1.3075 36 1 2.0699 1.5875 -2.1492 37 1 0.5489 2.1252 -1.3970 38 1 4.0030 0.9836 -0.7596 39 1 3.8570 0.8801 1.0114 40 1 3.6263 3.3457 1.1364 41 1 3.7722 3.4493 -0.6345 42 1 4.7093 5.3249 1.2408 43 1 5.3815 5.7978 -0.3496 44 1 6.6740 6.0772 2.4189 45 1 6.5457 7.3064 1.1167 46 1 8.1767 6.1877 -0.2572 47 1 8.8375 5.8586 1.3765 48 1 8.0065 2.6766 -0.9620 49 1 7.9097 4.3279 -1.6193 50 1 10.1305 3.2518 -0.0061 51 1 10.0881 2.4500 -2.2999 52 1 9.9822 4.1524 -2.8089 53 1 12.2067 3.0485 -3.8549 54 1 14.7660 2.5833 -5.9464 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568148867.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:51:27 Heat of formation + Delta-G solvation = -120.874067 kcal Electronic energy + Delta-G solvation = -29397.971796 eV Core-core repulsion = 25367.486707 eV Total energy + Delta-G solvation = -4030.485089 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.31950 -40.18066 -38.93621 -37.82777 -36.64156 -35.81108 -33.48993 -33.28769 -32.36623 -31.33200 -29.55806 -28.27964 -26.82800 -26.38800 -24.90312 -23.84249 -22.89154 -21.71197 -21.18009 -20.73652 -20.04262 -19.73285 -18.16558 -17.96926 -17.31079 -16.99496 -16.60370 -16.54046 -16.06229 -15.89542 -15.76412 -15.37083 -15.16586 -14.91868 -14.76605 -14.46882 -14.36968 -14.10738 -14.03047 -13.63845 -13.50721 -13.37406 -13.25545 -13.22324 -12.87569 -12.78192 -12.72164 -12.57652 -12.48268 -12.42615 -12.11955 -12.03478 -11.85982 -11.83935 -11.57548 -11.53612 -11.46999 -11.38371 -11.29590 -10.83826 -10.41175 -10.04504 -9.70389 -9.43101 -8.48799 -5.98119 1.35634 1.40848 1.55604 1.61615 1.92096 2.00813 2.28305 2.91234 3.17809 3.41101 3.54600 3.69688 3.80147 3.83601 3.91256 3.95961 4.14914 4.22820 4.24072 4.31880 4.32379 4.38592 4.43603 4.47273 4.49479 4.56738 4.59956 4.66789 4.72401 4.73594 4.78619 4.86883 4.90560 5.04395 5.05442 5.10130 5.12166 5.18484 5.20263 5.23636 5.25935 5.33563 5.36859 5.39154 5.45204 5.58203 5.59114 5.78694 6.02324 6.22744 6.56206 6.56769 7.09535 7.17221 7.52082 8.06946 8.68933 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.015287 B = 0.001825 C = 0.001681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.124578 B =15334.813082 C =16651.718319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.124 4.124 3 C -0.085 4.085 4 H 0.084 0.916 5 C -0.151 4.151 6 C -0.097 4.097 7 C -0.125 4.125 8 C 0.515 3.485 9 O -0.590 6.590 10 N -0.616 5.616 11 C 0.096 3.904 12 C -0.127 4.127 13 C -0.111 4.111 14 C 0.141 3.859 15 H 0.052 0.948 16 C 0.061 3.939 17 N -0.666 5.666 18 C 0.066 3.934 19 C 0.440 3.560 20 O -0.620 6.620 21 N -0.572 5.572 22 C -0.335 4.335 23 H 0.080 0.920 24 C -0.014 4.014 25 N -0.921 5.921 26 Si 0.996 3.004 27 H -0.273 1.273 28 H -0.271 1.271 29 H -0.269 1.269 30 H 0.061 0.939 31 H 0.052 0.948 32 H 0.059 0.941 33 H 0.052 0.948 34 H 0.055 0.945 35 H 0.066 0.934 36 H 0.044 0.956 37 H 0.065 0.935 38 H 0.046 0.954 39 H 0.051 0.949 40 H 0.119 0.881 41 H 0.115 0.885 42 H 0.104 0.896 43 H 0.086 0.914 44 H 0.077 0.923 45 H 0.107 0.893 46 H 0.077 0.923 47 H 0.074 0.926 48 H 0.018 0.982 49 H 0.080 0.920 50 H 0.341 0.659 51 H 0.055 0.945 52 H 0.107 0.893 53 H 0.396 0.604 54 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.271 4.363 9.254 32.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.162 4.162 3 C -0.103 4.103 4 H 0.102 0.898 5 C -0.208 4.208 6 C -0.136 4.136 7 C -0.164 4.164 8 C 0.306 3.694 9 O -0.471 6.471 10 N -0.350 5.350 11 C -0.025 4.025 12 C -0.165 4.165 13 C -0.149 4.149 14 C 0.036 3.964 15 H 0.070 0.930 16 C -0.069 4.069 17 N -0.298 5.298 18 C -0.066 4.066 19 C 0.227 3.773 20 O -0.506 6.506 21 N -0.209 5.209 22 C -0.465 4.465 23 H 0.098 0.902 24 C -0.213 4.213 25 N -0.562 5.562 26 Si 0.819 3.181 27 H -0.197 1.197 28 H -0.196 1.196 29 H -0.194 1.194 30 H 0.080 0.920 31 H 0.071 0.929 32 H 0.078 0.922 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.085 0.915 36 H 0.063 0.937 37 H 0.084 0.916 38 H 0.065 0.935 39 H 0.070 0.930 40 H 0.137 0.863 41 H 0.133 0.867 42 H 0.123 0.877 43 H 0.104 0.896 44 H 0.096 0.904 45 H 0.126 0.874 46 H 0.096 0.904 47 H 0.093 0.907 48 H 0.036 0.964 49 H 0.099 0.901 50 H 0.159 0.841 51 H 0.073 0.927 52 H 0.125 0.875 53 H 0.230 0.770 54 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -30.588 4.601 9.614 32.392 hybrid contribution 1.176 -1.576 -0.624 2.063 sum -29.412 3.025 8.990 30.904 Atomic orbital electron populations 1.21802 0.94898 1.01756 1.02329 1.21590 0.96665 0.96454 1.01468 1.21144 0.93358 0.96412 0.99413 0.89767 1.21960 1.01846 1.00743 0.96290 1.21358 0.95704 0.94919 1.01579 1.21758 0.88326 1.00072 1.06250 1.21292 0.91650 0.81608 0.74826 1.90705 1.71320 1.32713 1.52330 1.48788 1.06330 1.07828 1.72037 1.22666 0.97380 0.80409 1.02065 1.22844 0.92670 1.00791 1.00193 1.22492 0.98743 0.91325 1.02318 1.21360 0.80802 0.98499 0.95701 0.93016 1.22202 0.87005 0.98961 0.98709 1.60045 1.04297 1.60811 1.04662 1.21515 0.90589 1.00775 0.93764 1.20715 0.89817 0.82633 0.84123 1.90484 1.75764 1.53344 1.31046 1.41931 1.06529 1.60147 1.12335 1.19740 0.82560 1.45253 0.98911 0.90179 1.26089 1.05116 0.96018 0.94108 1.69687 1.38197 1.46011 1.02274 0.84829 0.76539 0.78329 0.78358 1.19717 1.19632 1.19415 0.92016 0.92921 0.92203 0.92907 0.92627 0.91468 0.93683 0.91582 0.93479 0.93039 0.86330 0.86652 0.87736 0.89574 0.90394 0.87441 0.90428 0.90713 0.96400 0.90116 0.84094 0.92684 0.87508 0.77029 0.91250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.67 71.98 0.70 -0.72 16 2 C -0.12 -1.51 5.40 30.59 0.17 -1.35 16 3 C -0.08 -0.92 2.39 -10.79 -0.03 -0.95 16 4 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 5 C -0.15 -1.40 8.70 71.98 0.63 -0.77 16 6 C -0.10 -1.56 3.97 30.59 0.12 -1.44 16 7 C -0.12 -1.63 4.55 29.85 0.14 -1.49 16 8 C 0.52 11.70 7.58 87.66 0.66 12.36 16 9 O -0.59 -19.59 15.18 -3.04 -0.05 -19.64 16 10 N -0.62 -12.01 3.07 -787.79 -2.42 -14.43 16 11 C 0.10 0.98 6.66 86.83 0.58 1.56 16 12 C -0.13 -1.42 7.08 31.99 0.23 -1.20 16 13 C -0.11 -2.16 6.22 31.78 0.20 -1.96 16 14 C 0.14 3.43 3.09 45.34 0.14 3.57 16 15 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 16 C 0.06 1.77 5.05 86.30 0.44 2.20 16 17 N -0.67 -23.20 5.83 -517.93 -3.02 -26.22 16 18 C 0.07 2.49 6.16 85.55 0.53 3.02 16 19 C 0.44 21.94 7.82 87.66 0.69 22.63 16 20 O -0.62 -35.50 15.78 -3.06 -0.05 -35.55 16 21 N -0.57 -30.51 5.29 -306.99 -1.62 -32.14 16 22 C -0.34 -19.55 9.68 84.04 0.81 -18.74 16 23 H 0.08 4.97 7.16 -2.91 -0.02 4.95 16 24 C -0.01 -0.74 5.50 84.93 0.47 -0.28 16 25 N -0.92 -50.74 13.05 21.66 0.28 -50.46 16 26 Si 1.00 43.71 29.55 68.60 2.03 45.74 16 27 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 28 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 29 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 30 H 0.06 0.52 6.56 -2.39 -0.02 0.50 16 31 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 33 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.07 0.47 6.56 -2.38 -0.02 0.45 16 36 H 0.04 0.52 8.14 -2.39 -0.02 0.50 16 37 H 0.07 0.50 6.56 -2.39 -0.02 0.49 16 38 H 0.05 0.97 8.10 -2.39 -0.02 0.95 16 39 H 0.05 1.00 8.10 -2.39 -0.02 0.98 16 40 H 0.12 0.90 7.77 -2.39 -0.02 0.88 16 41 H 0.12 1.05 6.56 -2.39 -0.02 1.03 16 42 H 0.10 0.51 7.51 -2.39 -0.02 0.50 16 43 H 0.09 0.67 8.14 -2.38 -0.02 0.65 16 44 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 45 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16 46 H 0.08 1.60 7.81 -2.39 -0.02 1.58 16 47 H 0.07 1.63 8.14 -2.39 -0.02 1.62 16 48 H 0.02 0.60 6.96 -2.39 -0.02 0.58 16 49 H 0.08 2.13 8.07 -2.38 -0.02 2.11 16 50 H 0.34 12.89 8.48 -89.69 -0.76 12.13 16 51 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 52 H 0.11 3.57 8.14 -2.39 -0.02 3.55 16 53 H 0.40 20.11 7.90 -92.70 -0.73 19.38 16 54 H 0.28 14.26 8.31 -92.70 -0.77 13.49 16 Total: -1.00 -75.44 426.86 1.00 -74.43 By element: Atomic # 1 Polarization: 42.41 SS G_CDS: -0.61 Total: 41.81 kcal Atomic # 6 Polarization: 10.00 SS G_CDS: 6.45 Total: 16.45 kcal Atomic # 7 Polarization: -116.47 SS G_CDS: -6.78 Total: -123.24 kcal Atomic # 8 Polarization: -55.09 SS G_CDS: -0.09 Total: -55.18 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Total: -75.44 1.00 -74.43 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568148867.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.441 kcal (2) G-P(sol) polarization free energy of solvation -75.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds