Wall clock time and date at job start Sat Apr 11 2020 05:51:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47160 * 2 1 4 4 C 1.50699 * 109.47190 * 180.02562 * 3 2 1 5 5 O 1.21287 * 119.99942 * 359.97438 * 4 3 2 6 6 N 1.34778 * 120.00122 * 179.97438 * 4 3 2 7 7 C 1.46958 * 120.65034 * 354.37521 * 6 4 3 8 8 C 1.53193 * 108.88640 * 126.46364 * 7 6 4 9 9 C 1.53042 * 109.31605 * 54.55492 * 8 7 6 10 10 C 1.53042 * 109.53485 * 298.63536 * 9 8 7 11 11 C 1.46917 * 120.63236 * 174.18893 * 6 4 3 12 12 H 1.09001 * 109.58535 * 113.68157 * 11 6 4 13 13 C 1.50705 * 109.58668 * 353.40171 * 11 6 4 14 14 O 1.21285 * 119.99686 * 300.05576 * 13 11 6 15 15 N 1.34778 * 120.00219 * 120.06088 * 13 11 6 16 16 C 1.46491 * 119.99852 * 355.39430 * 15 13 11 17 17 C 1.46499 * 120.00073 * 175.39348 * 15 13 11 18 18 H 1.09005 * 109.47053 * 359.97438 * 17 15 13 19 19 C 1.52999 * 109.47363 * 119.99744 * 17 15 13 20 20 C 1.52999 * 109.47359 * 240.00190 * 17 15 13 21 21 N 1.46503 * 109.47122 * 54.99836 * 20 17 15 22 22 C 1.36939 * 119.99917 * 180.02562 * 21 20 17 23 23 H 1.08006 * 119.99651 * 359.97438 * 22 21 20 24 24 C 1.38806 * 120.00107 * 179.97438 * 22 21 20 25 25 N 1.31620 * 120.00271 * 179.97438 * 24 22 21 26 26 Si 1.86804 * 120.00029 * 359.97438 * 24 22 21 27 27 H 1.48500 * 109.46757 * 269.99769 * 26 24 22 28 28 H 1.48502 * 109.47014 * 29.99815 * 26 24 22 29 29 H 1.48497 * 109.47410 * 149.99617 * 26 24 22 30 30 H 1.09006 * 109.47292 * 300.00181 * 1 2 3 31 31 H 1.08995 * 109.47182 * 60.00135 * 1 2 3 32 32 H 1.09002 * 109.46987 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.47113 * 239.99838 * 2 1 3 34 34 H 1.09004 * 109.47419 * 119.99688 * 2 1 3 35 35 H 1.08996 * 109.47240 * 59.99916 * 3 2 1 36 36 H 1.09004 * 109.46700 * 300.00128 * 3 2 1 37 37 H 1.09001 * 109.60119 * 6.60618 * 7 6 4 38 38 H 1.08995 * 109.58718 * 246.31040 * 7 6 4 39 39 H 1.09004 * 109.49938 * 294.60473 * 8 7 6 40 40 H 1.09006 * 109.49792 * 174.50546 * 8 7 6 41 41 H 1.08998 * 109.46069 * 178.61586 * 9 8 7 42 42 H 1.08997 * 109.45723 * 58.65238 * 9 8 7 43 43 H 1.08999 * 109.49813 * 301.41220 * 10 9 8 44 44 H 1.09004 * 109.49295 * 181.31323 * 10 9 8 45 45 H 1.09005 * 109.47064 * 275.41823 * 16 15 13 46 46 H 1.08996 * 109.47652 * 35.41782 * 16 15 13 47 47 H 1.09002 * 109.47327 * 155.42074 * 16 15 13 48 48 H 1.08998 * 109.46715 * 59.99709 * 19 17 15 49 49 H 1.08994 * 109.47607 * 180.02562 * 19 17 15 50 50 H 1.09002 * 109.46943 * 300.00664 * 19 17 15 51 51 H 1.09003 * 109.46589 * 294.99871 * 20 17 15 52 52 H 1.08993 * 109.47512 * 174.99888 * 20 17 15 53 53 H 0.96995 * 119.99854 * 359.97438 * 21 20 17 54 54 H 0.96993 * 120.00291 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 8 4.1534 0.3921 -0.0006 6 7 4.2209 2.6097 -0.0013 7 6 3.5058 3.8876 -0.1253 8 6 3.9151 4.7995 1.0356 9 6 5.4396 4.9322 1.0619 10 6 6.0693 3.5552 1.2842 11 6 5.6844 2.6292 0.1261 12 1 6.1268 2.9980 -0.7993 13 6 6.1858 1.2357 0.4054 14 8 5.8138 0.6449 1.3971 15 7 7.0476 0.6461 -0.4468 16 6 7.4186 1.3178 -1.6946 17 6 7.6132 -0.6664 -0.1252 18 1 7.2242 -1.0043 0.8354 19 6 7.2261 -1.6693 -1.2139 20 6 9.1376 -0.5600 -0.0485 21 7 9.5065 0.4856 0.9091 22 6 10.8266 0.7629 1.1452 23 1 11.5957 0.2104 0.6258 24 6 11.1762 1.7539 2.0521 25 7 12.4450 2.0201 2.2794 26 14 9.8459 2.7099 2.9498 27 1 9.4793 3.9111 2.1573 28 1 8.6493 1.8480 3.1246 29 1 10.3515 3.1306 4.2812 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5138 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 1.6767 1.9563 0.8899 36 1 1.6766 1.9563 -0.8900 37 1 2.4309 3.7102 -0.0890 38 1 3.7662 4.3617 -1.0715 39 1 3.5712 4.3683 1.9758 40 1 3.4666 5.7838 0.9007 41 1 5.7320 5.6003 1.8720 42 1 5.7849 5.3404 0.1121 43 1 5.7051 3.1356 2.2220 44 1 7.1541 3.6538 1.3261 45 1 6.6705 1.1049 -2.4583 46 1 7.4704 2.3935 -1.5268 47 1 8.3910 0.9548 -2.0275 48 1 7.6155 -1.3312 -2.1742 49 1 7.6466 -2.6459 -0.9745 50 1 6.1401 -1.7451 -1.2686 51 1 9.5341 -0.3082 -1.0321 52 1 9.5525 -1.5137 0.2773 53 1 8.8157 0.9820 1.3752 54 1 12.6892 2.7124 2.9134 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568320903.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:51:34 Heat of formation + Delta-G solvation = -75.693762 kcal Electronic energy + Delta-G solvation = -32952.309541 eV Core-core repulsion = 28923.783617 eV Total energy + Delta-G solvation = -4028.525924 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.13890 -40.17750 -38.53738 -37.74277 -35.93700 -35.34396 -33.95788 -33.88066 -32.77387 -31.67454 -29.03675 -27.82561 -27.64208 -26.57841 -25.03302 -24.12065 -23.29927 -22.30924 -21.61126 -20.61598 -19.68626 -19.51495 -18.63880 -17.83590 -17.25124 -16.95438 -16.77742 -16.57751 -16.17387 -15.73594 -15.63215 -15.28721 -15.03344 -14.97232 -14.77751 -14.67575 -14.41663 -14.19813 -13.98225 -13.83594 -13.80702 -13.61567 -13.53963 -13.23501 -13.03770 -12.92271 -12.78563 -12.66114 -12.50430 -12.44035 -12.30993 -12.17470 -12.00796 -11.91840 -11.82680 -11.80210 -11.67547 -11.63096 -11.06569 -10.64274 -10.49129 -9.73680 -9.45100 -9.35339 -8.09847 -5.40971 1.21284 1.28535 1.36389 1.49347 1.66196 2.01616 2.26557 2.38122 3.21172 3.29993 3.56057 3.69984 3.71419 3.76708 3.89595 3.96261 3.99082 4.04033 4.08224 4.10640 4.22091 4.25929 4.35675 4.39410 4.54091 4.59957 4.64055 4.66130 4.68160 4.71557 4.74245 4.77803 4.79540 4.85304 4.85567 4.93430 4.97721 5.05164 5.10033 5.12508 5.21277 5.24020 5.24763 5.35789 5.40260 5.46474 5.64867 5.72471 6.15007 6.37871 6.50417 6.99660 7.16537 7.41507 7.77048 7.96433 9.11745 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.012483 B = 0.004389 C = 0.003585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2242.437445 B = 6377.473662 C = 7807.557144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.108 4.108 3 C -0.123 4.123 4 C 0.489 3.511 5 O -0.548 6.548 6 N -0.604 5.604 7 C 0.103 3.897 8 C -0.132 4.132 9 C -0.114 4.114 10 C -0.130 4.130 11 C 0.126 3.874 12 H 0.114 0.886 13 C 0.529 3.471 14 O -0.578 6.578 15 N -0.603 5.603 16 C 0.077 3.923 17 C 0.137 3.863 18 H 0.060 0.940 19 C -0.136 4.136 20 C 0.146 3.854 21 N -0.755 5.755 22 C -0.226 4.226 23 H 0.067 0.933 24 C -0.053 4.053 25 N -0.977 5.977 26 Si 0.936 3.064 27 H -0.259 1.259 28 H -0.285 1.285 29 H -0.292 1.292 30 H 0.063 0.937 31 H 0.073 0.927 32 H 0.054 0.946 33 H 0.052 0.948 34 H 0.036 0.964 35 H 0.109 0.891 36 H 0.127 0.873 37 H 0.118 0.882 38 H 0.097 0.903 39 H 0.055 0.945 40 H 0.113 0.887 41 H 0.073 0.927 42 H 0.087 0.913 43 H 0.047 0.953 44 H 0.052 0.948 45 H 0.071 0.929 46 H 0.076 0.924 47 H 0.080 0.920 48 H 0.076 0.924 49 H 0.077 0.923 50 H 0.051 0.949 51 H 0.047 0.953 52 H 0.034 0.966 53 H 0.359 0.641 54 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.867 7.188 -12.167 31.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.146 4.146 3 C -0.162 4.162 4 C 0.279 3.721 5 O -0.425 6.425 6 N -0.341 5.341 7 C -0.017 4.017 8 C -0.170 4.170 9 C -0.151 4.151 10 C -0.169 4.169 11 C 0.019 3.981 12 H 0.131 0.869 13 C 0.319 3.681 14 O -0.457 6.457 15 N -0.337 5.337 16 C -0.065 4.065 17 C 0.033 3.967 18 H 0.078 0.922 19 C -0.194 4.194 20 C 0.019 3.981 21 N -0.400 5.400 22 C -0.357 4.357 23 H 0.085 0.915 24 C -0.245 4.245 25 N -0.628 5.628 26 Si 0.764 3.236 27 H -0.184 1.184 28 H -0.212 1.212 29 H -0.219 1.219 30 H 0.082 0.918 31 H 0.092 0.908 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.055 0.945 35 H 0.127 0.873 36 H 0.145 0.855 37 H 0.136 0.864 38 H 0.115 0.885 39 H 0.073 0.927 40 H 0.132 0.868 41 H 0.092 0.908 42 H 0.106 0.894 43 H 0.066 0.934 44 H 0.071 0.929 45 H 0.090 0.910 46 H 0.094 0.906 47 H 0.099 0.901 48 H 0.095 0.905 49 H 0.096 0.904 50 H 0.070 0.930 51 H 0.065 0.935 52 H 0.052 0.948 53 H 0.191 0.809 54 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -27.530 6.281 -11.710 30.569 hybrid contribution 0.356 0.181 1.343 1.401 sum -27.175 6.461 -10.368 29.794 Atomic orbital electron populations 1.21731 0.93075 1.02328 1.02955 1.21231 0.97080 0.95037 1.01296 1.21740 0.88188 0.99951 1.06317 1.21739 0.92262 0.82886 0.75259 1.90783 1.69598 1.32600 1.49518 1.48221 1.04306 1.08015 1.73538 1.22187 0.98155 0.81500 0.99878 1.21957 0.94798 1.01585 0.98643 1.21543 0.96467 0.93371 1.03758 1.21891 1.00451 0.97532 0.97003 1.21239 0.83355 0.92448 1.01046 0.86869 1.20369 0.77516 0.87636 0.82587 1.90616 1.58249 1.65649 1.31210 1.47655 1.45020 1.19477 1.21521 1.21923 1.01827 0.97767 0.85006 1.21101 0.92058 0.83846 0.99677 0.92215 1.21864 1.01269 0.98270 0.97996 1.21205 0.92743 0.91214 0.92917 1.42711 1.03242 1.43500 1.50567 1.19086 0.83810 1.14197 1.18639 0.91507 1.25261 0.97412 1.00856 1.00944 1.69833 1.16378 1.36325 1.40250 0.85721 0.79248 0.79811 0.78790 1.18398 1.21157 1.21856 0.91831 0.90835 0.92658 0.92937 0.94541 0.87297 0.85510 0.86435 0.88506 0.92658 0.86840 0.90802 0.89422 0.93433 0.92917 0.91042 0.90602 0.90135 0.90462 0.90439 0.93033 0.93540 0.94788 0.80895 0.93213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 9.91 71.98 0.71 -1.02 16 2 C -0.11 -2.07 5.22 30.59 0.16 -1.91 16 3 C -0.12 -1.93 4.06 29.85 0.12 -1.80 16 4 C 0.49 12.87 7.38 87.66 0.65 13.52 16 5 O -0.55 -20.31 11.67 20.70 0.24 -20.07 16 6 N -0.60 -13.51 2.98 -799.10 -2.38 -15.89 16 7 C 0.10 1.13 6.35 86.36 0.55 1.68 16 8 C -0.13 -1.59 6.08 30.67 0.19 -1.40 16 9 C -0.11 -2.05 5.88 30.62 0.18 -1.87 16 10 C -0.13 -3.82 5.32 30.67 0.16 -3.65 16 11 C 0.13 3.60 2.96 44.23 0.13 3.73 16 12 H 0.11 2.67 5.42 -2.39 -0.01 2.66 16 13 C 0.53 20.44 3.98 87.66 0.35 20.79 16 14 O -0.58 -27.82 13.84 20.70 0.29 -27.54 16 15 N -0.60 -21.40 2.24 -822.60 -1.85 -23.25 16 16 C 0.08 2.04 9.05 127.77 1.16 3.19 16 17 C 0.14 5.17 2.79 44.99 0.13 5.29 16 18 H 0.06 2.71 6.91 -2.38 -0.02 2.70 16 19 C -0.14 -3.91 9.19 71.98 0.66 -3.25 16 20 C 0.15 6.08 5.52 86.38 0.48 6.55 16 21 N -0.76 -38.94 5.24 -343.45 -1.80 -40.73 16 22 C -0.23 -13.53 10.47 84.03 0.88 -12.65 16 23 H 0.07 4.25 8.06 -2.91 -0.02 4.23 16 24 C -0.05 -3.25 5.50 84.86 0.47 -2.79 16 25 N -0.98 -64.03 13.97 21.65 0.30 -63.73 16 26 Si 0.94 49.21 27.65 68.60 1.90 51.11 16 27 H -0.26 -12.47 7.11 99.48 0.71 -11.76 16 28 H -0.28 -15.44 6.52 99.48 0.65 -14.79 16 29 H -0.29 -15.33 7.11 99.48 0.71 -14.62 16 30 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 31 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.05 1.15 8.10 -2.39 -0.02 1.13 16 34 H 0.04 0.93 8.10 -2.39 -0.02 0.91 16 35 H 0.11 1.34 7.92 -2.39 -0.02 1.32 16 36 H 0.13 1.05 7.71 -2.39 -0.02 1.04 16 37 H 0.12 0.61 5.93 -2.39 -0.01 0.60 16 38 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 39 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 40 H 0.11 0.64 8.14 -2.38 -0.02 0.62 16 41 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 42 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 43 H 0.05 1.66 7.96 -2.39 -0.02 1.64 16 44 H 0.05 1.80 8.06 -2.39 -0.02 1.78 16 45 H 0.07 1.55 8.14 -2.38 -0.02 1.53 16 46 H 0.08 1.81 6.04 -2.39 -0.01 1.80 16 47 H 0.08 2.14 6.54 -2.39 -0.02 2.12 16 48 H 0.08 1.88 7.67 -2.39 -0.02 1.86 16 49 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 50 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 51 H 0.05 1.80 6.86 -2.39 -0.02 1.78 16 52 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 53 H 0.36 19.04 4.93 -92.71 -0.46 18.59 16 54 H 0.26 16.14 8.31 -92.71 -0.77 15.37 16 Total: -1.00 -88.36 410.24 4.02 -84.34 By element: Atomic # 1 Polarization: 30.99 SS G_CDS: 0.36 Total: 31.34 kcal Atomic # 6 Polarization: 17.44 SS G_CDS: 6.97 Total: 24.41 kcal Atomic # 7 Polarization: -137.87 SS G_CDS: -5.72 Total: -143.59 kcal Atomic # 8 Polarization: -48.13 SS G_CDS: 0.53 Total: -47.61 kcal Atomic # 14 Polarization: 49.21 SS G_CDS: 1.90 Total: 51.11 kcal Total: -88.36 4.02 -84.34 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568320903.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.644 kcal (2) G-P(sol) polarization free energy of solvation -88.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds