Wall clock time and date at job start Sat Apr 11 2020 05:51:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.46575 * 2 1 4 4 H 1.08997 * 109.47192 * 304.99483 * 3 2 1 5 5 C 1.52997 * 109.47538 * 65.00078 * 3 2 1 6 6 C 1.53005 * 109.46920 * 185.00279 * 3 2 1 7 7 C 1.52992 * 109.47274 * 174.99873 * 6 3 2 8 8 C 1.50700 * 109.47257 * 179.97438 * 7 6 3 9 9 O 1.21279 * 120.00113 * 0.02562 * 8 7 6 10 10 N 1.34784 * 119.99961 * 180.02562 * 8 7 6 11 11 C 1.46494 * 119.99635 * 180.02562 * 10 8 7 12 12 C 1.53005 * 110.27591 * 300.69752 * 11 10 8 13 13 C 1.54591 * 110.31251 * 62.79160 * 11 10 8 14 14 C 1.54935 * 102.92130 * 96.95624 * 13 11 10 15 15 N 1.48530 * 103.22861 * 37.41733 * 14 13 11 16 16 C 1.46905 * 111.00008 * 200.27852 * 15 14 13 17 17 C 1.50698 * 109.47049 * 290.12323 * 16 15 14 18 18 O 1.21294 * 119.99858 * 0.02562 * 17 16 15 19 19 N 1.34774 * 119.99690 * 179.97438 * 17 16 15 20 20 C 1.37100 * 119.99948 * 180.02562 * 19 17 16 21 21 H 1.08001 * 120.00041 * 0.02562 * 20 19 17 22 22 C 1.38949 * 120.00157 * 180.02562 * 20 19 17 23 23 N 1.31411 * 119.99961 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00150 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.46778 * 359.97438 * 24 22 20 26 26 H 1.48494 * 109.47306 * 119.99908 * 24 22 20 27 27 H 1.48502 * 109.47117 * 240.00175 * 24 22 20 28 28 C 1.48120 * 105.86233 * 320.82723 * 15 14 13 29 29 H 1.09002 * 109.47200 * 60.00383 * 1 2 3 30 30 H 1.09001 * 109.46968 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47505 * 299.99900 * 1 2 3 32 32 H 1.08995 * 109.47128 * 240.00337 * 2 1 3 33 33 H 1.08994 * 109.47307 * 119.99927 * 2 1 3 34 34 H 1.08996 * 109.47218 * 300.00168 * 5 3 2 35 35 H 1.09002 * 109.46990 * 59.99737 * 5 3 2 36 36 H 1.08992 * 109.47369 * 179.97438 * 5 3 2 37 37 H 1.09004 * 109.47166 * 54.99499 * 6 3 2 38 38 H 1.09005 * 109.46988 * 294.99887 * 6 3 2 39 39 H 1.09004 * 109.47330 * 59.99726 * 7 6 3 40 40 H 1.08997 * 109.47279 * 300.00213 * 7 6 3 41 41 H 0.96995 * 120.00015 * 359.72695 * 10 8 7 42 42 H 1.08998 * 109.46928 * 59.30267 * 12 11 10 43 43 H 1.09004 * 109.47272 * 179.30049 * 12 11 10 44 44 H 1.09001 * 109.47123 * 299.30347 * 12 11 10 45 45 H 1.09001 * 110.72806 * 215.31182 * 13 11 10 46 46 H 1.09001 * 110.72276 * 338.59624 * 13 11 10 47 47 H 1.09000 * 110.66957 * 155.85300 * 14 13 11 48 48 H 1.09001 * 110.66869 * 278.81226 * 14 13 11 49 49 H 1.09000 * 109.46914 * 50.12558 * 16 15 14 50 50 H 1.08999 * 109.46727 * 170.12214 * 16 15 14 51 51 H 0.97001 * 120.00243 * 0.02562 * 19 17 16 52 52 H 0.96995 * 120.00327 * 180.02562 * 23 22 20 53 53 H 1.09002 * 109.94799 * 265.94984 * 28 15 14 54 54 H 1.09002 * 109.99403 * 144.58417 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0398 1.4426 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 1.6351 2.1267 1.3073 6 6 3.5647 1.4445 -0.1258 7 6 4.0643 2.8851 -0.2512 8 6 5.5662 2.8870 -0.3745 9 8 6.1769 1.8393 -0.3636 10 7 6.2309 4.0532 -0.4969 11 6 7.6909 4.0550 -0.6172 12 6 8.3248 3.3953 0.6091 13 6 8.1239 3.3195 -1.9062 14 6 8.3323 4.4785 -2.9130 15 7 8.9243 5.5534 -2.0762 16 6 8.7558 6.8676 -2.7108 17 6 9.6350 6.9522 -3.9318 18 8 10.3328 6.0102 -4.2431 19 7 9.6450 8.0742 -4.6785 20 6 10.4444 8.1510 -5.7896 21 1 11.0658 7.3123 -6.0669 22 6 10.4551 9.3079 -6.5591 23 7 9.6995 10.3286 -6.2215 24 14 11.5438 9.4123 -8.0735 25 1 12.2913 8.1393 -8.2344 26 1 10.7013 9.6473 -9.2736 27 1 12.5047 10.5335 -7.9160 28 6 8.2120 5.4950 -0.7788 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 0.5488 2.1253 1.3969 35 1 2.0698 1.5876 2.1491 36 1 1.9987 3.1541 1.3075 37 1 3.8570 0.8801 -1.0114 38 1 4.0029 0.9838 0.7596 39 1 3.7721 3.4495 0.6344 40 1 3.6261 3.3459 -1.1365 41 1 5.7422 4.8909 -0.5096 42 1 7.9658 2.3699 0.6964 43 1 9.4094 3.3925 0.5003 44 1 8.0509 3.9536 1.5043 45 1 9.0550 2.7758 -1.7458 46 1 7.3376 2.6471 -2.2493 47 1 9.0221 4.1823 -3.7033 48 1 7.3793 4.7971 -3.3356 49 1 7.7141 6.9990 -3.0033 50 1 9.0367 7.6500 -2.0058 51 1 9.0866 8.8273 -4.4297 52 1 9.7067 11.1361 -6.7589 53 1 7.3760 6.1944 -0.7817 54 1 8.8977 5.7351 0.0339 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569650102.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:51:53 Heat of formation + Delta-G solvation = -113.789649 kcal Electronic energy + Delta-G solvation = -29823.372082 eV Core-core repulsion = 25793.194196 eV Total energy + Delta-G solvation = -4030.177886 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.56802 -40.29963 -39.17167 -37.91895 -36.06871 -35.42456 -33.52870 -33.25545 -32.29610 -30.77686 -29.50567 -28.88629 -26.99366 -26.64954 -25.38665 -23.74136 -22.75128 -21.40235 -21.05983 -20.71448 -20.43792 -19.86583 -18.18864 -17.77619 -17.24780 -16.77569 -16.60172 -16.19481 -16.10638 -15.95692 -15.70164 -15.52752 -15.17733 -14.73000 -14.59218 -14.37718 -14.26610 -14.12514 -14.09090 -13.66486 -13.46509 -13.31685 -13.16276 -12.96570 -12.91489 -12.77852 -12.59173 -12.51336 -12.41653 -12.37264 -12.34142 -12.11810 -11.98763 -11.87515 -11.81903 -11.48391 -11.43972 -11.36819 -11.27915 -10.59871 -10.30694 -10.04378 -9.99147 -9.33765 -8.46382 -5.94501 1.36223 1.41559 1.55429 1.73148 2.06904 2.16316 2.29979 2.85055 3.20366 3.30919 3.49171 3.71409 3.78250 3.84821 3.93499 3.98869 4.17448 4.22262 4.28675 4.30867 4.34806 4.43737 4.46495 4.51571 4.57696 4.59713 4.68024 4.73680 4.76765 4.80767 4.82484 4.88653 4.92716 4.95362 5.08341 5.11222 5.11707 5.14332 5.20218 5.25228 5.26726 5.31734 5.36256 5.41723 5.56469 5.60106 5.60875 5.82885 5.94551 6.09436 6.61868 6.64261 7.14410 7.35778 7.57834 8.14549 8.71255 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.018135 B = 0.001835 C = 0.001752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.581089 B =15254.589713 C =15976.882609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.123 4.123 3 C -0.088 4.088 4 H 0.076 0.924 5 C -0.150 4.150 6 C -0.094 4.094 7 C -0.135 4.135 8 C 0.508 3.492 9 O -0.574 6.574 10 N -0.713 5.713 11 C 0.171 3.829 12 C -0.147 4.147 13 C -0.112 4.112 14 C 0.045 3.955 15 N -0.511 5.511 16 C 0.050 3.950 17 C 0.440 3.560 18 O -0.617 6.617 19 N -0.574 5.574 20 C -0.332 4.332 21 H 0.076 0.924 22 C -0.012 4.012 23 N -0.920 5.920 24 Si 0.991 3.009 25 H -0.276 1.276 26 H -0.271 1.271 27 H -0.270 1.270 28 C 0.039 3.961 29 H 0.055 0.945 30 H 0.053 0.947 31 H 0.061 0.939 32 H 0.053 0.947 33 H 0.057 0.943 34 H 0.062 0.938 35 H 0.050 0.950 36 H 0.065 0.935 37 H 0.049 0.951 38 H 0.055 0.945 39 H 0.118 0.882 40 H 0.109 0.891 41 H 0.413 0.587 42 H 0.060 0.940 43 H 0.065 0.935 44 H 0.072 0.928 45 H 0.068 0.932 46 H 0.069 0.931 47 H 0.058 0.942 48 H 0.042 0.958 49 H 0.073 0.927 50 H 0.115 0.885 51 H 0.396 0.604 52 H 0.277 0.723 53 H 0.077 0.923 54 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.824 -11.100 17.676 28.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C -0.107 4.107 4 H 0.094 0.906 5 C -0.207 4.207 6 C -0.133 4.133 7 C -0.174 4.174 8 C 0.297 3.703 9 O -0.453 6.453 10 N -0.367 5.367 11 C 0.084 3.916 12 C -0.205 4.205 13 C -0.151 4.151 14 C -0.082 4.082 15 N -0.236 5.236 16 C -0.082 4.082 17 C 0.228 3.772 18 O -0.503 6.503 19 N -0.212 5.212 20 C -0.461 4.461 21 H 0.094 0.906 22 C -0.212 4.212 23 N -0.561 5.561 24 Si 0.815 3.185 25 H -0.200 1.200 26 H -0.196 1.196 27 H -0.196 1.196 28 C -0.089 4.089 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.081 0.919 35 H 0.069 0.931 36 H 0.084 0.916 37 H 0.068 0.932 38 H 0.073 0.927 39 H 0.136 0.864 40 H 0.127 0.873 41 H 0.251 0.749 42 H 0.079 0.921 43 H 0.084 0.916 44 H 0.091 0.909 45 H 0.087 0.913 46 H 0.088 0.912 47 H 0.076 0.924 48 H 0.060 0.940 49 H 0.091 0.909 50 H 0.133 0.867 51 H 0.230 0.770 52 H 0.087 0.913 53 H 0.095 0.905 54 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -18.388 -12.334 17.468 28.203 hybrid contribution -0.429 0.934 -1.147 1.540 sum -18.817 -11.399 16.321 27.393 Atomic orbital electron populations 1.21811 0.95182 1.01741 1.02184 1.21577 0.96444 0.96418 1.01583 1.21162 0.93899 0.96380 0.99250 0.90578 1.21943 1.01702 1.00736 0.96336 1.21317 0.95262 0.94886 1.01793 1.21785 0.89349 1.00180 1.06116 1.21318 0.91381 0.83058 0.74563 1.90674 1.70797 1.32893 1.50955 1.46212 1.06296 1.09623 1.74558 1.20966 0.80377 0.94997 0.95226 1.22075 1.00661 1.01513 0.96294 1.22725 1.01374 0.96554 0.94483 1.23117 0.96882 0.91913 0.96329 1.64494 1.53411 1.02374 1.03313 1.21952 0.98006 0.93490 0.94703 1.20807 0.86564 0.83182 0.86668 1.90493 1.47073 1.39053 1.73698 1.41913 1.40089 1.14928 1.24304 1.19669 1.21654 1.01232 1.03581 0.90574 1.25987 0.98906 0.94374 1.01892 1.69665 1.40101 1.05201 1.41108 0.84901 0.77951 0.78169 0.77493 1.20046 1.19588 1.19561 1.23312 0.98298 0.94728 0.92513 0.92630 0.92826 0.91960 0.92771 0.92404 0.91933 0.93132 0.91580 0.93215 0.92652 0.86410 0.87273 0.74948 0.92145 0.91642 0.90921 0.91284 0.91239 0.92376 0.94001 0.90875 0.86691 0.76961 0.91330 0.90480 0.87874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 9.67 71.98 0.70 -0.76 16 2 C -0.12 -1.43 5.40 30.59 0.17 -1.27 16 3 C -0.09 -0.94 2.39 -10.79 -0.03 -0.97 16 4 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 5 C -0.15 -1.27 8.70 71.98 0.63 -0.65 16 6 C -0.09 -1.37 3.97 30.59 0.12 -1.25 16 7 C -0.13 -1.57 5.45 29.85 0.16 -1.41 16 8 C 0.51 9.74 7.02 87.66 0.62 10.35 16 9 O -0.57 -15.87 12.85 -3.03 -0.04 -15.91 16 10 N -0.71 -11.80 5.15 -418.95 -2.16 -13.96 16 11 C 0.17 3.72 0.94 4.48 0.00 3.72 16 12 C -0.15 -3.14 8.14 71.98 0.59 -2.56 16 13 C -0.11 -3.20 5.83 31.80 0.19 -3.02 16 14 C 0.05 1.51 5.86 86.65 0.51 2.02 16 15 N -0.51 -16.27 4.96 -886.97 -4.40 -20.67 16 16 C 0.05 1.66 5.19 85.56 0.44 2.10 16 17 C 0.44 20.97 7.59 87.66 0.66 21.64 16 18 O -0.62 -34.68 14.42 -3.07 -0.04 -34.72 16 19 N -0.57 -29.36 5.29 -306.99 -1.62 -30.99 16 20 C -0.33 -18.93 9.68 84.04 0.81 -18.12 16 21 H 0.08 4.68 7.16 -2.91 -0.02 4.66 16 22 C -0.01 -0.64 5.50 84.93 0.47 -0.17 16 23 N -0.92 -49.27 13.05 21.66 0.28 -48.99 16 24 Si 0.99 43.15 29.55 68.60 2.03 45.18 16 25 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 26 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 27 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 28 C 0.04 0.84 6.16 86.40 0.53 1.37 16 29 H 0.05 0.51 8.14 -2.39 -0.02 0.50 16 30 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.06 0.52 6.57 -2.39 -0.02 0.51 16 32 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.06 0.47 6.56 -2.39 -0.02 0.45 16 35 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 36 H 0.07 0.43 6.56 -2.39 -0.02 0.41 16 37 H 0.05 0.92 8.10 -2.38 -0.02 0.90 16 38 H 0.05 0.96 8.10 -2.38 -0.02 0.94 16 39 H 0.12 0.83 6.56 -2.38 -0.02 0.81 16 40 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.41 4.28 8.09 -92.71 -0.75 3.53 16 42 H 0.06 1.53 6.17 -2.39 -0.01 1.52 16 43 H 0.06 1.45 8.13 -2.39 -0.02 1.43 16 44 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 45 H 0.07 2.13 7.86 -2.39 -0.02 2.11 16 46 H 0.07 2.07 6.69 -2.39 -0.02 2.05 16 47 H 0.06 2.42 6.91 -2.39 -0.02 2.41 16 48 H 0.04 1.31 7.86 -2.39 -0.02 1.29 16 49 H 0.07 2.10 7.90 -2.39 -0.02 2.08 16 50 H 0.12 3.27 8.11 -2.39 -0.02 3.25 16 51 H 0.40 19.03 7.90 -92.71 -0.73 18.30 16 52 H 0.28 13.86 8.31 -92.71 -0.77 13.09 16 53 H 0.08 1.23 7.10 -2.39 -0.02 1.21 16 54 H 0.10 2.02 7.68 -2.39 -0.02 2.01 16 Total: -1.00 -73.01 417.55 0.03 -72.98 By element: Atomic # 1 Polarization: 36.63 SS G_CDS: -0.59 Total: 36.04 kcal Atomic # 6 Polarization: 4.47 SS G_CDS: 6.57 Total: 11.04 kcal Atomic # 7 Polarization: -106.71 SS G_CDS: -7.89 Total: -114.60 kcal Atomic # 8 Polarization: -50.55 SS G_CDS: -0.08 Total: -50.63 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Total: -73.01 0.03 -72.98 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569650102.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.812 kcal (2) G-P(sol) polarization free energy of solvation -73.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds