Wall clock time and date at job start Sat Apr 11 2020 05:49:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53006 * 109.46533 * 2 1 4 4 H 1.08997 * 109.47066 * 304.99841 * 3 2 1 5 5 N 1.46501 * 109.47200 * 65.00170 * 3 2 1 6 6 C 1.34773 * 119.99943 * 274.72532 * 5 3 2 7 7 O 1.21587 * 120.00033 * 354.65368 * 6 5 3 8 8 N 1.34774 * 120.00109 * 174.66478 * 6 5 3 9 9 C 1.47078 * 120.88261 * 184.71343 * 8 6 5 10 10 C 1.53695 * 108.28137 * 128.75180 * 9 8 6 11 11 N 1.46905 * 109.25513 * 54.07797 * 10 9 8 12 12 C 1.46900 * 110.99545 * 172.61129 * 11 10 9 13 13 C 1.50701 * 109.47301 * 59.37179 * 12 11 10 14 14 H 1.08000 * 119.99848 * 355.03781 * 13 12 11 15 15 C 1.37881 * 119.99801 * 175.04099 * 13 12 11 16 16 N 1.31515 * 119.99762 * 179.97438 * 15 13 12 17 17 Si 1.86791 * 120.00141 * 0.02562 * 15 13 12 18 18 H 1.48494 * 109.47422 * 89.99931 * 17 15 13 19 19 H 1.48502 * 109.47244 * 209.99978 * 17 15 13 20 20 H 1.48503 * 109.47275 * 329.99589 * 17 15 13 21 21 C 1.46894 * 111.27115 * 296.75890 * 11 10 9 22 22 C 1.47079 * 120.88040 * 4.98266 * 8 6 5 23 23 C 1.53004 * 109.46526 * 185.00062 * 3 2 1 24 24 H 1.08998 * 109.52382 * 299.87045 * 23 3 2 25 25 C 1.53176 * 109.51918 * 179.68646 * 23 3 2 26 26 C 1.53175 * 109.03704 * 183.11391 * 25 23 3 27 27 C 1.53092 * 109.16532 * 56.98005 * 26 25 23 28 28 O 1.42905 * 109.41412 * 302.39283 * 27 26 25 29 29 C 1.42907 * 114.09782 * 61.15682 * 28 27 26 30 30 H 1.09007 * 109.46876 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47213 * 299.99480 * 1 2 3 32 32 H 1.09000 * 109.47006 * 60.00272 * 1 2 3 33 33 H 1.08994 * 109.47213 * 240.00520 * 2 1 3 34 34 H 1.09000 * 109.47006 * 119.99728 * 2 1 3 35 35 H 0.97002 * 119.99805 * 94.99113 * 5 3 2 36 36 H 1.09005 * 109.62682 * 248.51784 * 9 8 6 37 37 H 1.08999 * 109.62637 * 9.09665 * 9 8 6 38 38 H 1.09004 * 109.64415 * 294.08197 * 10 9 8 39 39 H 1.08992 * 109.42535 * 173.94751 * 10 9 8 40 40 H 1.09000 * 109.47077 * 179.36987 * 12 11 10 41 41 H 1.09000 * 109.47200 * 299.36629 * 12 11 10 42 42 H 0.97002 * 120.00317 * 180.02562 * 16 15 13 43 43 H 1.09004 * 109.49507 * 303.14862 * 21 11 10 44 44 H 1.08997 * 109.49499 * 183.06678 * 21 11 10 45 45 H 1.08997 * 109.62994 * 350.90302 * 22 8 6 46 46 H 1.08999 * 109.62992 * 111.47920 * 22 8 6 47 47 H 1.08998 * 109.54690 * 302.98193 * 25 23 3 48 48 H 1.09005 * 109.54481 * 63.24785 * 25 23 3 49 49 H 1.09003 * 109.52348 * 297.07168 * 26 25 23 50 50 H 1.09002 * 109.52491 * 176.89023 * 26 25 23 51 51 H 1.08993 * 109.48348 * 182.41106 * 27 26 25 52 52 H 1.09000 * 109.48643 * 62.37884 * 27 26 25 53 53 H 1.08996 * 109.48315 * 178.85984 * 29 28 27 54 54 H 1.08999 * 109.47961 * 58.82215 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 -0.8418 5 7 1.6523 2.0976 1.2518 6 6 0.4371 2.6692 1.3651 7 8 -0.2998 2.7273 0.3997 8 7 0.0387 3.1766 2.5484 9 6 -1.3204 3.7116 2.7213 10 6 -1.9405 3.0591 3.9670 11 7 -1.0449 3.2574 5.1145 12 6 -1.6774 2.8039 6.3604 13 6 -2.0203 1.3409 6.2461 14 1 -1.8652 0.8213 5.3121 15 6 -2.5320 0.6658 7.3340 16 7 -2.8317 -0.6109 7.2341 17 14 -2.8008 1.5647 8.9491 18 1 -4.1704 2.1381 8.9745 19 1 -2.6418 0.6129 10.0779 20 1 -1.8040 2.6577 9.0792 21 6 0.2456 2.5877 4.9051 22 6 0.9534 3.2153 3.6995 23 6 3.5648 1.4444 -0.1257 24 1 4.0004 0.9076 0.7169 25 6 4.0759 2.8884 -0.1337 26 6 5.5940 2.8799 -0.3381 27 6 5.9220 2.1403 -1.6377 28 8 5.3920 0.8145 -1.5766 29 6 3.9711 0.7602 -1.4336 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5137 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 2.2718 2.1231 1.9978 36 1 -1.2741 4.7924 2.8550 37 1 -1.9218 3.4737 1.8439 38 1 -2.0768 1.9918 3.7923 39 1 -2.9059 3.5202 4.1752 40 1 -0.9887 2.9517 7.1922 41 1 -2.5873 3.3778 6.5357 42 1 -3.1920 -1.0858 7.9993 43 1 0.0788 1.5270 4.7173 44 1 0.8657 2.7070 5.7936 45 1 1.8559 2.6492 3.4693 46 1 1.2141 4.2493 3.9254 47 1 3.6017 3.4386 -0.9464 48 1 3.8388 3.3644 0.8177 49 1 6.0716 2.3726 0.5002 50 1 5.9589 3.9051 -0.4003 51 1 7.0033 2.0938 -1.7666 52 1 5.4779 2.6708 -2.4801 53 1 3.6471 -0.2803 -1.4154 54 1 3.5015 1.2728 -2.2731 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000883890059.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:29 Heat of formation + Delta-G solvation = -93.143665 kcal Electronic energy + Delta-G solvation = -31638.310784 eV Core-core repulsion = 27609.028175 eV Total energy + Delta-G solvation = -4029.282609 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.71252 -40.45198 -39.24099 -37.33224 -35.99009 -34.43630 -34.20157 -33.43201 -31.97671 -31.81278 -30.25997 -27.54599 -26.79772 -25.87455 -24.56358 -23.87350 -23.86136 -22.27747 -21.60535 -21.23545 -20.45850 -19.21665 -18.72275 -17.79033 -17.16674 -16.85191 -16.74661 -16.57653 -16.10036 -15.90192 -15.85113 -15.62633 -15.29638 -15.25129 -15.03263 -14.68365 -14.54586 -14.43321 -13.97530 -13.87236 -13.73972 -13.46949 -13.28717 -13.04788 -13.02845 -12.84463 -12.48175 -12.46807 -12.25957 -12.17227 -12.06987 -12.03068 -11.91122 -11.80481 -11.71850 -11.62021 -11.40135 -11.21933 -11.09697 -10.81041 -10.42326 -10.09743 -9.55809 -9.01860 -8.32873 -6.39226 1.36806 1.37412 1.49087 1.63375 2.19439 2.32993 2.87013 2.95540 3.02288 3.24396 3.56894 3.74697 3.86159 3.97880 4.05385 4.09262 4.14813 4.16727 4.20324 4.21292 4.35223 4.35750 4.47885 4.52728 4.54594 4.59986 4.65727 4.73363 4.75599 4.78105 4.85585 4.87943 4.95906 4.99368 5.01545 5.04245 5.06031 5.08614 5.10765 5.16669 5.18929 5.21784 5.37019 5.39815 5.46892 5.48713 5.62505 5.92877 6.09058 6.26630 6.28484 6.33716 6.68032 6.98234 7.28166 7.59531 8.83651 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.017567 B = 0.002553 C = 0.002530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.539573 B =10965.959555 C =11063.437865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.134 4.134 3 C 0.175 3.825 4 H 0.075 0.925 5 N -0.729 5.729 6 C 0.708 3.292 7 O -0.624 6.624 8 N -0.631 5.631 9 C 0.147 3.853 10 C 0.054 3.946 11 N -0.522 5.522 12 C 0.159 3.841 13 C -0.550 4.550 14 H 0.027 0.973 15 C 0.008 3.992 16 N -0.951 5.951 17 Si 0.953 3.047 18 H -0.269 1.269 19 H -0.287 1.287 20 H -0.238 1.238 21 C 0.048 3.952 22 C 0.126 3.874 23 C -0.119 4.119 24 H 0.089 0.911 25 C -0.115 4.115 26 C -0.151 4.151 27 C 0.052 3.948 28 O -0.398 6.398 29 C 0.067 3.933 30 H 0.048 0.952 31 H 0.023 0.977 32 H 0.049 0.951 33 H 0.095 0.905 34 H 0.065 0.935 35 H 0.404 0.596 36 H 0.088 0.912 37 H 0.078 0.922 38 H 0.004 0.996 39 H 0.080 0.920 40 H 0.040 0.960 41 H 0.031 0.969 42 H 0.265 0.735 43 H 0.007 0.993 44 H 0.090 0.910 45 H 0.099 0.901 46 H 0.095 0.905 47 H 0.059 0.941 48 H 0.070 0.930 49 H 0.071 0.929 50 H 0.086 0.914 51 H 0.105 0.895 52 H 0.055 0.945 53 H 0.106 0.894 54 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.564 8.963 -15.023 25.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.172 4.172 3 C 0.070 3.930 4 H 0.093 0.907 5 N -0.387 5.387 6 C 0.409 3.591 7 O -0.505 6.505 8 N -0.368 5.368 9 C 0.023 3.977 10 C -0.075 4.075 11 N -0.245 5.245 12 C 0.031 3.969 13 C -0.589 4.589 14 H 0.045 0.955 15 C -0.189 4.189 16 N -0.591 5.591 17 Si 0.776 3.224 18 H -0.194 1.194 19 H -0.213 1.213 20 H -0.161 1.161 21 C -0.082 4.082 22 C 0.004 3.996 23 C -0.138 4.138 24 H 0.107 0.893 25 C -0.152 4.152 26 C -0.188 4.188 27 C -0.024 4.024 28 O -0.317 6.317 29 C -0.010 4.010 30 H 0.067 0.933 31 H 0.043 0.957 32 H 0.068 0.932 33 H 0.113 0.887 34 H 0.084 0.916 35 H 0.242 0.758 36 H 0.106 0.894 37 H 0.097 0.903 38 H 0.022 0.978 39 H 0.098 0.902 40 H 0.058 0.942 41 H 0.049 0.951 42 H 0.074 0.926 43 H 0.025 0.975 44 H 0.108 0.892 45 H 0.117 0.883 46 H 0.113 0.887 47 H 0.078 0.922 48 H 0.088 0.912 49 H 0.090 0.910 50 H 0.105 0.895 51 H 0.123 0.877 52 H 0.073 0.927 53 H 0.124 0.876 54 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 18.190 9.201 -15.603 25.671 hybrid contribution -1.003 -1.148 1.275 1.987 sum 17.186 8.053 -14.329 23.781 Atomic orbital electron populations 1.21662 0.96928 1.00111 1.00877 1.22066 0.95155 0.96671 1.03351 1.20790 0.93772 0.92410 0.86026 0.90701 1.45193 1.15407 1.60325 1.17782 1.15887 0.82504 0.77849 0.82814 1.90860 1.55893 1.65664 1.38115 1.47402 1.14806 1.64439 1.10142 1.21582 0.81511 0.98223 0.96387 1.22338 0.96678 0.97517 0.91013 1.62447 1.03880 1.55570 1.02601 1.20109 0.95103 0.91911 0.89739 1.21900 1.42930 0.96273 0.97751 0.95463 1.25989 0.94297 0.95370 1.03292 1.70100 1.45444 1.10945 1.32602 0.85630 0.79922 0.79013 0.77851 1.19405 1.21302 1.16120 1.22328 0.91783 0.95208 0.98847 1.21862 0.91533 1.02646 0.83606 1.21973 0.93044 0.98163 1.00620 0.89315 1.21602 0.95814 0.95153 1.02665 1.22167 0.95804 1.01993 0.98876 1.22772 1.00014 0.82877 0.96785 1.87942 1.21471 1.28297 1.94016 1.22687 0.81107 1.02129 0.95108 0.93317 0.95745 0.93224 0.88685 0.91616 0.75803 0.89410 0.90312 0.97807 0.90174 0.94158 0.95084 0.92574 0.97454 0.89220 0.88327 0.88662 0.92193 0.91154 0.91033 0.89497 0.87725 0.92716 0.87614 0.92478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.93 8.59 71.98 0.62 -3.31 16 2 C -0.13 -2.78 5.39 30.60 0.17 -2.62 16 3 C 0.18 3.45 1.84 44.99 0.08 3.53 16 4 H 0.07 1.76 7.50 -2.39 -0.02 1.74 16 5 N -0.73 -16.30 4.31 -457.81 -1.97 -18.27 16 6 C 0.71 21.40 6.67 179.06 1.20 22.60 16 7 O -0.62 -22.97 13.43 -3.99 -0.05 -23.02 16 8 N -0.63 -18.71 3.00 -835.05 -2.51 -21.21 16 9 C 0.15 4.65 6.61 86.50 0.57 5.22 16 10 C 0.05 2.08 5.17 86.54 0.45 2.52 16 11 N -0.52 -20.01 4.83 -898.88 -4.34 -24.35 16 12 C 0.16 7.16 4.21 85.56 0.36 7.52 16 13 C -0.55 -30.62 8.32 25.60 0.21 -30.41 16 14 H 0.03 1.74 6.12 -2.91 -0.02 1.72 16 15 C 0.01 0.47 5.47 84.66 0.46 0.94 16 16 N -0.95 -59.20 13.96 21.45 0.30 -58.90 16 17 Si 0.95 42.77 27.57 68.60 1.89 44.66 16 18 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 19 H -0.29 -12.81 7.11 99.48 0.71 -12.11 16 20 H -0.24 -9.65 6.40 99.48 0.64 -9.01 16 21 C 0.05 1.63 5.25 86.38 0.45 2.08 16 22 C 0.13 3.12 6.59 86.35 0.57 3.69 16 23 C -0.12 -1.72 2.02 -10.70 -0.02 -1.74 16 24 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 25 C -0.11 -1.53 5.11 30.71 0.16 -1.37 16 26 C -0.15 -1.64 6.14 30.68 0.19 -1.46 16 27 C 0.05 0.62 6.84 72.01 0.49 1.11 16 28 O -0.40 -6.67 10.77 -148.98 -1.60 -8.27 16 29 C 0.07 0.96 5.71 72.01 0.41 1.37 16 30 H 0.05 1.31 8.14 -2.38 -0.02 1.29 16 31 H 0.02 0.84 5.78 -2.39 -0.01 0.83 16 32 H 0.05 1.46 7.93 -2.39 -0.02 1.44 16 33 H 0.09 1.51 6.23 -2.39 -0.01 1.49 16 34 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.40 7.25 5.92 -92.71 -0.55 6.70 16 36 H 0.09 2.42 8.14 -2.38 -0.02 2.40 16 37 H 0.08 2.67 7.09 -2.39 -0.02 2.65 16 38 H 0.00 0.17 6.61 -2.38 -0.02 0.15 16 39 H 0.08 2.98 8.11 -2.39 -0.02 2.96 16 40 H 0.04 1.76 6.78 -2.39 -0.02 1.75 16 41 H 0.03 1.38 7.82 -2.39 -0.02 1.36 16 42 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 43 H 0.01 0.30 7.12 -2.38 -0.02 0.29 16 44 H 0.09 2.81 8.05 -2.39 -0.02 2.79 16 45 H 0.10 1.84 5.64 -2.39 -0.01 1.82 16 46 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 47 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 48 H 0.07 0.94 7.59 -2.38 -0.02 0.92 16 49 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 50 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 51 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 52 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 53 H 0.11 1.35 6.46 -2.39 -0.02 1.34 16 54 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 Total: -1.00 -72.61 397.02 -1.66 -74.26 By element: Atomic # 1 Polarization: 25.17 SS G_CDS: 0.26 Total: 25.43 kcal Atomic # 6 Polarization: 3.32 SS G_CDS: 6.37 Total: 9.69 kcal Atomic # 7 Polarization: -114.22 SS G_CDS: -8.52 Total: -122.74 kcal Atomic # 8 Polarization: -29.64 SS G_CDS: -1.66 Total: -31.30 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 1.89 Total: 44.66 kcal Total: -72.61 -1.66 -74.26 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883890059.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.881 kcal (2) G-P(sol) polarization free energy of solvation -72.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds