Wall clock time and date at job start Sat Apr 11 2020 05:49:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47055 * 2 1 4 4 H 1.09000 * 109.47589 * 304.99898 * 3 2 1 5 5 N 1.46502 * 109.47164 * 64.99795 * 3 2 1 6 6 C 1.34773 * 119.99901 * 274.99824 * 5 3 2 7 7 O 1.21589 * 120.00155 * 4.40102 * 6 5 3 8 8 N 1.34776 * 119.99963 * 184.40310 * 6 5 3 9 9 C 1.47080 * 120.88380 * 175.00078 * 8 6 5 10 10 C 1.53238 * 108.52570 * 231.20349 * 9 8 6 11 11 N 1.46901 * 109.33893 * 306.17460 * 10 9 8 12 12 C 1.46895 * 110.99710 * 187.25284 * 11 10 9 13 13 C 1.50698 * 109.47047 * 169.99896 * 12 11 10 14 14 H 1.07993 * 120.00132 * 359.97438 * 13 12 11 15 15 C 1.37884 * 120.00124 * 180.02562 * 13 12 11 16 16 N 1.31506 * 120.00009 * 180.27141 * 15 13 12 17 17 Si 1.86805 * 119.99647 * 359.97438 * 15 13 12 18 18 H 1.48505 * 109.46838 * 90.00680 * 17 15 13 19 19 H 1.48502 * 109.47008 * 209.99948 * 17 15 13 20 20 H 1.48493 * 109.47242 * 330.00402 * 17 15 13 21 21 C 1.46895 * 111.27203 * 63.09952 * 11 10 9 22 22 C 1.47079 * 120.88240 * 355.02105 * 8 6 5 23 23 C 1.52998 * 109.47124 * 184.99633 * 3 2 1 24 24 H 1.09002 * 109.52316 * 60.12545 * 23 3 2 25 25 C 1.53177 * 109.52464 * 180.31626 * 23 3 2 26 26 C 1.53177 * 109.03693 * 176.88669 * 25 23 3 27 27 C 1.53098 * 109.16363 * 303.01794 * 26 25 23 28 28 O 1.42907 * 109.41151 * 57.60790 * 27 26 25 29 29 C 1.42892 * 114.09880 * 298.84068 * 28 27 26 30 30 H 1.09001 * 109.47317 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47769 * 300.00375 * 1 2 3 32 32 H 1.09003 * 109.46732 * 60.00158 * 1 2 3 33 33 H 1.08997 * 109.47041 * 239.99497 * 2 1 3 34 34 H 1.09003 * 109.46732 * 119.99842 * 2 1 3 35 35 H 0.96998 * 119.99809 * 95.00097 * 5 3 2 36 36 H 1.09002 * 109.62551 * 111.49008 * 9 8 6 37 37 H 1.09006 * 109.78723 * 351.01430 * 9 8 6 38 38 H 1.08995 * 109.49539 * 186.20886 * 10 9 8 39 39 H 1.09002 * 109.50718 * 66.14059 * 10 9 8 40 40 H 1.09002 * 109.47433 * 49.99572 * 12 11 10 41 41 H 1.09009 * 109.46965 * 289.99702 * 12 11 10 42 42 H 0.97005 * 120.00361 * 179.71468 * 16 15 13 43 43 H 1.09001 * 109.49183 * 56.85648 * 21 11 10 44 44 H 1.09001 * 109.49048 * 176.93341 * 21 11 10 45 45 H 1.08999 * 109.63330 * 248.50745 * 22 8 6 46 46 H 1.08996 * 109.62854 * 8.89218 * 22 8 6 47 47 H 1.09001 * 109.54108 * 296.74940 * 25 23 3 48 48 H 1.09000 * 109.54101 * 57.02190 * 25 23 3 49 49 H 1.08995 * 109.52504 * 183.11355 * 26 25 23 50 50 H 1.09002 * 109.57327 * 62.95346 * 26 25 23 51 51 H 1.08997 * 109.48090 * 297.63087 * 27 26 25 52 52 H 1.09001 * 109.49071 * 177.59580 * 27 26 25 53 53 H 1.08999 * 109.48585 * 301.17877 * 29 28 27 54 54 H 1.09008 * 109.48233 * 181.14380 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 7 1.6524 2.0975 1.2518 6 6 0.4351 2.6644 1.3669 7 8 -0.3707 2.5632 0.4620 8 7 0.1110 3.3435 2.4850 9 6 -1.1685 4.0615 2.5880 10 6 -0.8858 5.4980 3.0404 11 7 -0.0873 5.4715 4.2732 12 6 0.0600 6.8212 4.8340 13 6 0.6655 6.7296 6.2109 14 1 0.9155 5.7653 6.6279 15 6 0.8994 7.8770 6.9389 16 7 1.4328 7.7975 8.1383 17 14 0.4664 9.5450 6.2179 18 1 -0.9297 9.8950 6.5838 19 1 1.3921 10.5731 6.7578 20 1 0.5924 9.4930 4.7393 21 6 1.2241 4.8499 4.0455 22 6 1.0277 3.3868 3.6344 23 6 3.5648 1.4443 -0.1256 24 1 3.8541 0.9591 -1.0578 25 6 4.0774 2.8878 -0.1178 26 6 5.6084 2.8746 -0.1655 27 6 6.1411 2.0625 1.0180 28 8 5.6017 0.7400 0.9677 29 6 4.1765 0.6875 1.0563 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 2.2719 2.1232 1.9977 36 1 -1.8082 3.5666 3.3188 37 1 -1.6638 4.0741 1.6170 38 1 -1.8282 6.0123 3.2284 39 1 -0.3339 6.0231 2.2608 40 1 -0.9187 7.2968 4.8983 41 1 0.7101 7.4133 4.1898 42 1 1.6012 8.6050 8.6488 43 1 1.7467 5.3838 3.2519 44 1 1.8117 4.8944 4.9625 45 1 0.5992 2.8272 4.4658 46 1 1.9864 2.9503 3.3547 47 1 3.6900 3.4169 -0.9885 48 1 3.7452 3.3877 0.7921 49 1 5.9835 3.8961 -0.1045 50 1 5.9407 2.4195 -1.0986 51 1 5.8433 2.5412 1.9508 52 1 7.2287 2.0137 0.9654 53 1 3.8530 1.1483 1.9896 54 1 3.8488 -0.3519 1.0312 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000883890060.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:31 Heat of formation + Delta-G solvation = -86.708866 kcal Electronic energy + Delta-G solvation = -31838.527097 eV Core-core repulsion = 27809.523522 eV Total energy + Delta-G solvation = -4029.003575 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.81501 -40.47032 -39.21218 -37.29577 -35.95664 -34.52024 -34.21788 -33.31014 -32.04947 -31.74550 -30.37183 -27.60119 -26.79971 -26.07043 -24.71543 -23.84517 -23.62788 -22.41373 -21.71380 -20.83202 -20.46363 -19.14736 -18.89815 -17.73771 -17.11229 -16.94637 -16.70291 -16.57992 -16.13620 -16.00108 -15.76759 -15.51675 -15.36771 -15.27759 -15.16696 -14.75776 -14.50092 -14.46000 -14.17605 -13.97391 -13.60328 -13.51330 -13.26895 -13.14915 -12.91308 -12.67424 -12.54087 -12.42398 -12.32082 -12.23954 -12.12892 -12.09148 -11.94778 -11.83934 -11.71800 -11.41770 -11.39192 -11.20658 -11.05369 -10.77618 -10.39080 -10.06005 -9.57964 -9.04849 -8.27893 -6.30795 1.35111 1.36171 1.45754 1.63417 2.16886 2.33987 2.85008 2.92717 3.04715 3.14348 3.58640 3.70225 3.78959 3.93571 4.00232 4.03864 4.10156 4.16635 4.21537 4.23698 4.27010 4.33880 4.39959 4.48815 4.52903 4.60072 4.68714 4.72998 4.76059 4.80364 4.83020 4.84882 4.88182 4.93813 4.97695 5.00868 5.02914 5.08183 5.11305 5.12302 5.18463 5.24542 5.34154 5.43122 5.52413 5.54999 5.63326 5.87165 6.03027 6.24464 6.29886 6.59665 6.75398 6.94335 7.32919 7.58059 8.87994 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.012145 B = 0.003079 C = 0.002647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2304.889353 B = 9091.599658 C =10574.178647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.131 4.131 3 C 0.174 3.826 4 H 0.072 0.928 5 N -0.731 5.731 6 C 0.707 3.293 7 O -0.615 6.615 8 N -0.630 5.630 9 C 0.145 3.855 10 C 0.042 3.958 11 N -0.538 5.538 12 C 0.172 3.828 13 C -0.513 4.513 14 H 0.046 0.954 15 C 0.013 3.987 16 N -0.944 5.944 17 Si 0.941 3.059 18 H -0.266 1.266 19 H -0.283 1.283 20 H -0.255 1.255 21 C 0.054 3.946 22 C 0.128 3.872 23 C -0.118 4.118 24 H 0.104 0.896 25 C -0.119 4.119 26 C -0.151 4.151 27 C 0.052 3.948 28 O -0.396 6.396 29 C 0.062 3.938 30 H 0.050 0.950 31 H 0.038 0.962 32 H 0.040 0.960 33 H 0.088 0.912 34 H 0.074 0.926 35 H 0.400 0.600 36 H 0.074 0.926 37 H 0.092 0.908 38 H 0.090 0.910 39 H 0.023 0.977 40 H 0.029 0.971 41 H -0.016 1.016 42 H 0.266 0.734 43 H 0.022 0.978 44 H 0.077 0.923 45 H 0.077 0.923 46 H 0.099 0.901 47 H 0.065 0.935 48 H 0.056 0.944 49 H 0.079 0.921 50 H 0.075 0.925 51 H 0.051 0.949 52 H 0.104 0.896 53 H 0.049 0.951 54 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.031 -14.532 -18.977 24.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.170 4.170 3 C 0.069 3.931 4 H 0.090 0.910 5 N -0.390 5.390 6 C 0.409 3.591 7 O -0.496 6.496 8 N -0.367 5.367 9 C 0.022 3.978 10 C -0.087 4.087 11 N -0.262 5.262 12 C 0.045 3.955 13 C -0.551 4.551 14 H 0.064 0.936 15 C -0.185 4.185 16 N -0.585 5.585 17 Si 0.765 3.235 18 H -0.191 1.191 19 H -0.209 1.209 20 H -0.179 1.179 21 C -0.075 4.075 22 C 0.005 3.995 23 C -0.137 4.137 24 H 0.122 0.878 25 C -0.156 4.156 26 C -0.188 4.188 27 C -0.024 4.024 28 O -0.314 6.314 29 C -0.015 4.015 30 H 0.069 0.931 31 H 0.057 0.943 32 H 0.060 0.940 33 H 0.106 0.894 34 H 0.093 0.907 35 H 0.239 0.761 36 H 0.092 0.908 37 H 0.110 0.890 38 H 0.109 0.891 39 H 0.041 0.959 40 H 0.047 0.953 41 H 0.002 0.998 42 H 0.075 0.925 43 H 0.041 0.959 44 H 0.095 0.905 45 H 0.096 0.904 46 H 0.117 0.883 47 H 0.084 0.916 48 H 0.075 0.925 49 H 0.098 0.902 50 H 0.093 0.907 51 H 0.069 0.931 52 H 0.122 0.878 53 H 0.067 0.933 54 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 5.386 -14.946 -19.181 24.906 hybrid contribution 0.315 1.965 0.187 1.999 sum 5.701 -12.981 -18.994 23.702 Atomic orbital electron populations 1.21708 0.96171 0.99998 1.01516 1.22011 0.95829 0.95666 1.03447 1.20853 0.93312 0.93254 0.85640 0.90963 1.45375 1.15037 1.60772 1.17828 1.15866 0.82820 0.78397 0.82000 1.90883 1.50784 1.66748 1.41185 1.47402 1.20800 1.53725 1.14761 1.21460 0.84326 0.90036 1.02025 1.22529 0.98804 0.97045 0.90358 1.61792 1.16333 1.21670 1.26422 1.19936 0.95551 0.86411 0.93612 1.21215 1.40189 0.93822 0.99919 0.93603 1.25748 0.94774 1.03046 0.94956 1.70025 1.45621 1.30114 1.12743 0.85806 0.78747 0.79301 0.79599 1.19110 1.20890 1.17944 1.22296 0.90827 0.94427 0.99975 1.21732 0.93617 0.95872 0.88285 1.22039 0.92876 0.97220 1.01549 0.87773 1.21624 0.95775 0.95854 1.02373 1.22154 0.95413 1.01419 0.99849 1.22743 0.99497 0.82844 0.97338 1.87934 1.20850 1.28126 1.94535 1.22777 0.80458 1.01995 0.96233 0.93100 0.94273 0.94041 0.89358 0.90704 0.76103 0.90762 0.88958 0.89129 0.95915 0.95256 0.99837 0.92453 0.95950 0.90490 0.90435 0.88334 0.91647 0.92476 0.90200 0.90657 0.93069 0.87776 0.93305 0.87260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.89 8.46 71.98 0.61 -2.28 16 2 C -0.13 -2.00 5.11 30.59 0.16 -1.85 16 3 C 0.17 2.94 2.01 44.99 0.09 3.03 16 4 H 0.07 1.53 7.64 -2.39 -0.02 1.51 16 5 N -0.73 -14.37 4.13 -457.82 -1.89 -16.26 16 6 C 0.71 18.92 7.04 179.06 1.26 20.18 16 7 O -0.62 -19.87 12.63 -4.00 -0.05 -19.92 16 8 N -0.63 -17.11 3.01 -835.93 -2.52 -19.62 16 9 C 0.15 4.10 6.58 86.35 0.57 4.67 16 10 C 0.04 1.33 5.62 86.38 0.49 1.81 16 11 N -0.54 -20.79 4.62 -899.83 -4.16 -24.95 16 12 C 0.17 7.90 3.79 85.56 0.32 8.22 16 13 C -0.51 -28.28 8.96 25.60 0.23 -28.05 16 14 H 0.05 2.79 7.37 -2.91 -0.02 2.76 16 15 C 0.01 0.71 5.47 84.66 0.46 1.17 16 16 N -0.94 -57.19 13.96 21.45 0.30 -56.89 16 17 Si 0.94 42.92 27.47 68.60 1.88 44.80 16 18 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 19 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 20 H -0.26 -11.00 6.54 99.48 0.65 -10.35 16 21 C 0.05 1.84 5.46 86.38 0.47 2.32 16 22 C 0.13 3.32 6.60 86.35 0.57 3.89 16 23 C -0.12 -1.57 2.24 -10.70 -0.02 -1.59 16 24 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 25 C -0.12 -1.76 5.19 30.71 0.16 -1.60 16 26 C -0.15 -1.96 6.14 30.69 0.19 -1.77 16 27 C 0.05 0.73 6.84 72.01 0.49 1.23 16 28 O -0.40 -6.71 10.77 -148.98 -1.60 -8.32 16 29 C 0.06 0.84 5.57 72.02 0.40 1.24 16 30 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.04 1.02 5.54 -2.39 -0.01 1.01 16 32 H 0.04 1.00 7.80 -2.39 -0.02 0.98 16 33 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.07 1.00 6.77 -2.39 -0.02 0.98 16 35 H 0.40 6.71 4.10 -92.71 -0.38 6.33 16 36 H 0.07 2.05 8.14 -2.39 -0.02 2.04 16 37 H 0.09 2.59 7.11 -2.38 -0.02 2.58 16 38 H 0.09 2.70 7.99 -2.39 -0.02 2.68 16 39 H 0.02 0.74 8.14 -2.39 -0.02 0.73 16 40 H 0.03 1.33 7.40 -2.39 -0.02 1.31 16 41 H -0.02 -0.75 7.18 -2.38 -0.02 -0.77 16 42 H 0.27 15.11 8.31 -92.70 -0.77 14.34 16 43 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 44 H 0.08 3.02 6.67 -2.39 -0.02 3.00 16 45 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 46 H 0.10 1.91 5.63 -2.39 -0.01 1.90 16 47 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 48 H 0.06 0.97 7.35 -2.39 -0.02 0.95 16 49 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 50 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 51 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 52 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 53 H 0.05 0.65 6.43 -2.39 -0.02 0.63 16 54 H 0.11 1.24 6.69 -2.38 -0.02 1.23 16 Total: -1.00 -67.85 396.09 -1.15 -69.00 By element: Atomic # 1 Polarization: 21.11 SS G_CDS: 0.44 Total: 21.56 kcal Atomic # 6 Polarization: 4.16 SS G_CDS: 6.44 Total: 10.61 kcal Atomic # 7 Polarization: -109.46 SS G_CDS: -8.26 Total: -117.73 kcal Atomic # 8 Polarization: -26.58 SS G_CDS: -1.65 Total: -28.24 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 1.88 Total: 44.80 kcal Total: -67.85 -1.15 -69.00 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883890060.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.710 kcal (2) G-P(sol) polarization free energy of solvation -67.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds