Wall clock time and date at job start Sat Apr 11 2020 05:49:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52992 * 109.47421 * 2 1 4 4 H 1.09002 * 109.47361 * 54.99604 * 3 2 1 5 5 C 1.53003 * 109.47521 * 174.99722 * 3 2 1 6 6 N 1.46899 * 109.47323 * 174.21320 * 5 3 2 7 7 C 1.47008 * 110.99928 * 192.04678 * 6 5 3 8 8 C 1.53102 * 109.25780 * 177.60405 * 7 6 5 9 9 O 1.43014 * 109.25809 * 56.84966 * 8 7 6 10 10 C 1.43014 * 113.73762 * 301.33039 * 9 8 7 11 11 C 1.47006 * 111.00212 * 68.40907 * 6 5 3 12 12 N 1.46503 * 109.47189 * 294.99788 * 3 2 1 13 13 C 1.34780 * 119.99852 * 95.87051 * 12 3 2 14 14 O 1.21584 * 119.99987 * 354.56483 * 13 12 3 15 15 N 1.34780 * 119.99835 * 174.56286 * 13 12 3 16 16 C 1.46927 * 120.63112 * 5.05343 * 15 13 12 17 17 C 1.53188 * 108.77731 * 126.36701 * 16 15 13 18 18 C 1.53046 * 109.31079 * 54.63285 * 17 16 15 19 19 C 1.53044 * 109.53704 * 298.63490 * 18 17 16 20 20 H 1.08993 * 109.49808 * 301.41545 * 19 18 17 21 21 C 1.50699 * 109.49097 * 181.31667 * 19 18 17 22 22 H 1.07995 * 120.00403 * 0.02562 * 21 19 18 23 23 C 1.37880 * 119.99406 * 180.02562 * 21 19 18 24 24 N 1.31516 * 119.99817 * 180.02562 * 23 21 19 25 25 Si 1.86799 * 120.00252 * 359.97438 * 23 21 19 26 26 H 1.48502 * 109.46967 * 90.00458 * 25 23 21 27 27 H 1.48496 * 109.47378 * 210.00144 * 25 23 21 28 28 H 1.48497 * 109.47077 * 330.00536 * 25 23 21 29 29 C 1.46921 * 120.62642 * 184.77177 * 15 13 12 30 30 H 1.09001 * 109.47113 * 300.00192 * 1 2 3 31 31 H 1.08995 * 109.46885 * 60.00064 * 1 2 3 32 32 H 1.08995 * 109.47197 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.47342 * 239.99311 * 2 1 3 34 34 H 1.09004 * 109.46972 * 120.00171 * 2 1 3 35 35 H 1.09001 * 109.46974 * 54.21017 * 5 3 2 36 36 H 1.08997 * 109.46792 * 294.21433 * 5 3 2 37 37 H 1.08999 * 109.50941 * 297.53814 * 7 6 5 38 38 H 1.09006 * 109.51083 * 57.67145 * 7 6 5 39 39 H 1.09000 * 109.50853 * 296.91061 * 8 7 6 40 40 H 1.09001 * 109.50629 * 176.78338 * 8 7 6 41 41 H 1.09007 * 109.50476 * 298.73537 * 10 9 8 42 42 H 1.09000 * 109.54213 * 178.62528 * 10 9 8 43 43 H 1.09005 * 109.50644 * 302.32984 * 11 6 5 44 44 H 1.08995 * 109.50946 * 62.45696 * 11 6 5 45 45 H 0.96994 * 120.00022 * 275.87339 * 12 3 2 46 46 H 1.09007 * 109.58111 * 246.15713 * 16 15 13 47 47 H 1.09000 * 109.58265 * 6.43509 * 16 15 13 48 48 H 1.08995 * 109.49430 * 174.58544 * 17 16 15 49 49 H 1.09001 * 109.49682 * 294.68667 * 17 16 15 50 50 H 1.09002 * 109.45578 * 58.65312 * 18 17 16 51 51 H 1.08998 * 109.45674 * 178.62810 * 18 17 16 52 52 H 0.96996 * 120.00047 * 179.97438 * 24 23 21 53 53 H 1.08994 * 109.59013 * 353.41883 * 29 15 13 54 54 H 1.09004 * 109.58567 * 113.84965 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5649 1.4443 0.1258 6 7 4.0660 2.8181 -0.0131 7 6 5.5261 2.8315 -0.1841 8 6 5.9978 4.2742 -0.3845 9 8 5.5757 5.0674 0.7281 10 6 4.1590 5.0773 0.9236 11 6 3.6686 3.6427 1.1372 12 7 1.6525 2.0974 -1.2518 13 6 0.5355 2.8500 -1.3009 14 8 -0.2028 2.9059 -0.3365 15 7 0.2370 3.5408 -2.4191 16 6 1.0581 3.3978 -3.6290 17 6 0.1452 3.0347 -4.8044 18 6 -0.9691 4.0774 -4.9206 19 6 -1.8069 4.0760 -3.6398 20 1 -2.2267 3.0828 -3.4808 21 6 -2.9233 5.0801 -3.7681 22 1 -3.0257 5.6611 -4.6727 23 6 -3.8139 5.2570 -2.7305 24 7 -4.7885 6.1329 -2.8426 25 14 -3.6372 4.2515 -1.1662 26 1 -2.7619 4.9747 -0.2092 27 1 -4.9752 4.0466 -0.5556 28 1 -3.0339 2.9338 -1.4903 29 6 -0.9193 4.4465 -2.4530 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5139 0.8900 35 1 3.9948 0.8197 -0.6573 36 1 3.8494 1.0506 1.1016 37 1 6.0004 2.4136 0.7039 38 1 5.7960 2.2359 -1.0562 39 1 5.5656 4.6744 -1.3017 40 1 7.0853 4.2951 -0.4546 41 1 3.6732 5.5008 0.0444 42 1 3.9159 5.6792 1.7992 43 1 2.5825 3.6393 1.2296 44 1 4.1131 3.2378 2.0462 45 1 2.1998 1.9894 -2.0453 46 1 1.5670 4.3387 -3.8386 47 1 1.7954 2.6091 -3.4791 48 1 0.7272 3.0199 -5.7259 49 1 -0.2931 2.0513 -4.6344 50 1 -0.5293 5.0641 -5.0658 51 1 -1.6060 3.8349 -5.7712 52 1 -5.4153 6.2571 -2.1129 53 1 -1.4880 4.3479 -1.5284 54 1 -0.5750 5.4747 -2.5648 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000925605881.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:38 Heat of formation + Delta-G solvation = -89.439119 kcal Electronic energy + Delta-G solvation = -32528.022208 eV Core-core repulsion = 28498.900240 eV Total energy + Delta-G solvation = -4029.121968 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.54492 -40.51422 -38.95595 -37.59237 -35.77545 -35.33971 -33.88376 -32.71064 -32.16847 -32.03533 -30.34223 -27.39759 -26.95114 -25.98199 -25.05218 -23.67333 -23.52348 -22.14681 -21.55157 -21.20586 -20.44187 -19.08459 -18.79083 -17.62566 -17.51235 -17.08267 -16.65123 -16.55726 -16.06062 -15.96882 -15.86976 -15.56947 -15.39655 -15.20340 -15.14239 -14.86769 -14.67401 -14.30592 -14.23910 -13.98660 -13.68463 -13.63464 -13.25941 -13.14592 -12.91245 -12.75423 -12.54912 -12.40540 -12.32544 -12.30062 -12.11554 -11.91283 -11.85206 -11.67642 -11.57557 -11.48057 -11.23126 -11.03162 -10.90621 -10.78221 -10.69065 -10.00765 -9.38021 -9.29938 -8.39145 -6.40362 1.23104 1.29377 1.44501 1.77869 2.21299 2.29480 2.68478 2.92228 2.97819 3.10795 3.65559 3.90239 3.98852 4.01435 4.08487 4.10288 4.15575 4.15933 4.19408 4.22382 4.33924 4.42252 4.46939 4.53290 4.58090 4.61207 4.62316 4.68554 4.71607 4.74538 4.77698 4.85691 4.88765 4.90634 4.97566 5.01249 5.01878 5.03440 5.13079 5.19915 5.23711 5.41060 5.45901 5.55345 5.64531 5.69252 5.73927 5.93259 6.01006 6.14711 6.15438 6.27865 6.68566 7.17382 7.25431 7.73504 8.76871 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.012316 B = 0.003717 C = 0.003545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2272.842883 B = 7531.573888 C = 7897.570944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.122 4.122 3 C 0.163 3.837 4 H 0.059 0.941 5 C 0.055 3.945 6 N -0.539 5.539 7 C 0.023 3.977 8 C 0.057 3.943 9 O -0.404 6.404 10 C 0.067 3.933 11 C 0.024 3.976 12 N -0.707 5.707 13 C 0.700 3.300 14 O -0.641 6.641 15 N -0.631 5.631 16 C 0.116 3.884 17 C -0.126 4.126 18 C -0.097 4.097 19 C 0.004 3.996 20 H 0.010 0.990 21 C -0.510 4.510 22 H 0.051 0.949 23 C 0.030 3.970 24 N -0.938 5.938 25 Si 0.943 3.057 26 H -0.285 1.285 27 H -0.297 1.297 28 H -0.269 1.269 29 C 0.131 3.869 30 H 0.031 0.969 31 H 0.024 0.976 32 H 0.060 0.940 33 H 0.085 0.915 34 H 0.090 0.910 35 H 0.109 0.891 36 H 0.060 0.940 37 H 0.043 0.957 38 H 0.110 0.890 39 H 0.056 0.944 40 H 0.117 0.883 41 H 0.046 0.954 42 H 0.101 0.899 43 H 0.066 0.934 44 H 0.045 0.955 45 H 0.407 0.593 46 H 0.078 0.922 47 H 0.104 0.896 48 H 0.106 0.894 49 H 0.055 0.945 50 H 0.058 0.942 51 H 0.054 0.946 52 H 0.266 0.734 53 H 0.047 0.953 54 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.219 -13.206 3.204 30.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.161 4.161 3 C 0.057 3.943 4 H 0.077 0.923 5 C -0.073 4.073 6 N -0.265 5.265 7 C -0.104 4.104 8 C -0.020 4.020 9 O -0.323 6.323 10 C -0.010 4.010 11 C -0.104 4.104 12 N -0.365 5.365 13 C 0.402 3.598 14 O -0.523 6.523 15 N -0.367 5.367 16 C -0.006 4.006 17 C -0.164 4.164 18 C -0.134 4.134 19 C -0.016 4.016 20 H 0.028 0.972 21 C -0.549 4.549 22 H 0.069 0.931 23 C -0.169 4.169 24 N -0.578 5.578 25 Si 0.774 3.226 26 H -0.212 1.212 27 H -0.225 1.225 28 H -0.194 1.194 29 C 0.008 3.992 30 H 0.050 0.950 31 H 0.043 0.957 32 H 0.079 0.921 33 H 0.104 0.896 34 H 0.109 0.891 35 H 0.127 0.873 36 H 0.079 0.921 37 H 0.061 0.939 38 H 0.129 0.871 39 H 0.074 0.926 40 H 0.135 0.865 41 H 0.064 0.936 42 H 0.119 0.881 43 H 0.084 0.916 44 H 0.063 0.937 45 H 0.246 0.754 46 H 0.096 0.904 47 H 0.122 0.878 48 H 0.124 0.876 49 H 0.074 0.926 50 H 0.077 0.923 51 H 0.072 0.928 52 H 0.076 0.924 53 H 0.065 0.935 54 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 26.514 -12.771 3.674 29.658 hybrid contribution -0.825 -0.259 1.259 1.527 sum 25.689 -13.030 4.933 29.224 Atomic orbital electron populations 1.21617 0.97409 1.00418 1.00333 1.21872 0.94637 0.95583 1.03990 1.20950 0.94232 0.92935 0.86170 0.92325 1.22451 0.92748 0.89241 1.02833 1.62117 1.12289 1.11522 1.40531 1.22823 0.86703 0.98217 1.02672 1.22874 1.00960 0.89455 0.88708 1.87955 1.22428 1.70832 1.51062 1.22590 0.81079 0.95621 1.01748 1.22651 1.00616 0.94755 0.92372 1.44820 1.24908 1.52378 1.14363 1.16069 0.82182 0.78859 0.82671 1.90859 1.52780 1.70600 1.38088 1.47501 1.30991 1.45887 1.12311 1.21820 0.92695 1.02771 0.83309 1.21934 0.97015 0.98345 0.99123 1.21358 0.96543 0.99155 0.96390 1.19344 0.93180 0.95222 0.93809 0.97182 1.21341 1.10454 1.21251 1.01824 0.93086 1.25597 0.94968 0.95569 1.00752 1.69987 1.17513 1.36355 1.33986 0.85991 0.75157 0.80587 0.80903 1.21197 1.22498 1.19429 1.21761 0.86219 0.91797 0.99469 0.94998 0.95698 0.92058 0.89636 0.89107 0.87294 0.92147 0.93902 0.87137 0.92605 0.86527 0.93580 0.88124 0.91569 0.93696 0.75426 0.90408 0.87790 0.87553 0.92629 0.92320 0.92769 0.92422 0.93513 0.92611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.79 8.79 71.98 0.63 -3.15 16 2 C -0.12 -2.17 5.61 30.59 0.17 -1.99 16 3 C 0.16 3.32 2.05 44.99 0.09 3.41 16 4 H 0.06 1.63 6.04 -2.39 -0.01 1.62 16 5 C 0.06 0.72 4.59 86.30 0.40 1.12 16 6 N -0.54 -8.65 4.42 -895.24 -3.95 -12.60 16 7 C 0.02 0.27 5.64 86.32 0.49 0.76 16 8 C 0.06 0.80 7.01 72.02 0.50 1.30 16 9 O -0.40 -8.41 10.83 -148.98 -1.61 -10.02 16 10 C 0.07 1.41 7.01 72.02 0.50 1.91 16 11 C 0.02 0.49 5.45 86.32 0.47 0.97 16 12 N -0.71 -16.88 4.39 -457.81 -2.01 -18.89 16 13 C 0.70 25.17 7.11 179.05 1.27 26.45 16 14 O -0.64 -29.46 13.94 -3.98 -0.06 -29.51 16 15 N -0.63 -22.64 2.98 -837.74 -2.50 -25.13 16 16 C 0.12 2.83 6.40 86.36 0.55 3.38 16 17 C -0.13 -3.25 6.08 30.67 0.19 -3.07 16 18 C -0.10 -3.53 5.11 30.62 0.16 -3.37 16 19 C 0.00 0.20 1.83 -11.60 -0.02 0.18 16 20 H 0.01 0.52 7.20 -2.39 -0.02 0.50 16 21 C -0.51 -29.49 9.15 25.60 0.23 -29.26 16 22 H 0.05 3.15 7.99 -2.91 -0.02 3.13 16 23 C 0.03 1.80 5.45 84.65 0.46 2.27 16 24 N -0.94 -60.09 13.96 21.45 0.30 -59.79 16 25 Si 0.94 52.01 24.32 68.60 1.67 53.67 16 26 H -0.28 -16.01 6.92 99.48 0.69 -15.32 16 27 H -0.30 -16.05 7.11 99.48 0.71 -15.34 16 28 H -0.27 -14.98 6.53 99.48 0.65 -14.33 16 29 C 0.13 6.02 5.10 86.22 0.44 6.46 16 30 H 0.03 1.00 8.12 -2.39 -0.02 0.98 16 31 H 0.02 0.82 6.42 -2.39 -0.02 0.81 16 32 H 0.06 1.40 8.14 -2.39 -0.02 1.39 16 33 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.11 0.86 8.00 -2.39 -0.02 0.84 16 36 H 0.06 0.70 8.10 -2.39 -0.02 0.68 16 37 H 0.04 0.51 8.14 -2.39 -0.02 0.49 16 38 H 0.11 0.77 8.07 -2.38 -0.02 0.75 16 39 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.12 1.12 8.14 -2.39 -0.02 1.10 16 41 H 0.05 1.09 8.14 -2.38 -0.02 1.08 16 42 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 43 H 0.07 1.68 6.59 -2.38 -0.02 1.67 16 44 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 45 H 0.41 7.23 6.20 -92.71 -0.57 6.66 16 46 H 0.08 1.74 8.14 -2.38 -0.02 1.72 16 47 H 0.10 1.73 5.64 -2.39 -0.01 1.71 16 48 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 49 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 50 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 51 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 52 H 0.27 16.14 8.31 -92.71 -0.77 15.37 16 53 H 0.05 2.47 2.30 -2.39 -0.01 2.47 16 54 H 0.06 2.57 8.14 -2.38 -0.02 2.55 16 Total: -1.00 -79.62 398.84 -1.39 -81.02 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: 0.23 Total: 13.90 kcal Atomic # 6 Polarization: 0.82 SS G_CDS: 6.54 Total: 7.36 kcal Atomic # 7 Polarization: -108.26 SS G_CDS: -8.16 Total: -116.42 kcal Atomic # 8 Polarization: -37.87 SS G_CDS: -1.67 Total: -39.54 kcal Atomic # 14 Polarization: 52.01 SS G_CDS: 1.67 Total: 53.67 kcal Total: -79.62 -1.39 -81.02 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000925605881.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.423 kcal (2) G-P(sol) polarization free energy of solvation -79.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds