Wall clock time and date at job start Sat Apr 11 2020 05:50:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47418 * 2 1 4 4 N 1.46900 * 109.47340 * 120.00265 * 2 1 3 5 5 C 1.47018 * 110.99820 * 298.95556 * 4 2 1 6 6 C 1.53097 * 109.25552 * 177.60759 * 5 4 2 7 7 O 1.43014 * 109.26014 * 56.84774 * 6 5 4 8 8 C 1.43009 * 113.73794 * 301.32585 * 7 6 5 9 9 H 1.09001 * 109.50749 * 298.69331 * 8 7 6 10 10 C 1.50705 * 109.50653 * 178.60571 * 8 7 6 11 11 O 1.21277 * 120.00181 * 354.99990 * 10 8 7 12 12 N 1.34777 * 119.99702 * 175.00319 * 10 8 7 13 13 C 1.46501 * 119.99596 * 180.02562 * 12 10 8 14 14 H 1.09005 * 110.89016 * 31.12050 * 13 12 10 15 15 C 1.55133 * 111.19477 * 267.18468 * 13 12 10 16 16 N 1.47421 * 104.72251 * 279.19584 * 15 13 12 17 17 C 1.36934 * 125.65030 * 155.81786 * 16 15 13 18 18 H 1.07994 * 120.00101 * 193.35821 * 17 16 15 19 19 C 1.38811 * 119.99843 * 13.35762 * 17 16 15 20 20 N 1.31619 * 120.00362 * 204.21540 * 19 17 16 21 21 Si 1.86804 * 120.00012 * 23.94159 * 19 17 16 22 22 H 1.48496 * 109.47234 * 270.27607 * 21 19 17 23 23 H 1.48499 * 109.46944 * 30.27504 * 21 19 17 24 24 H 1.48500 * 109.46997 * 150.27374 * 21 19 17 25 25 C 1.47023 * 108.70138 * 335.54938 * 16 15 13 26 26 C 1.54323 * 107.27391 * 1.28822 * 25 16 15 27 27 C 1.53003 * 110.72055 * 140.55589 * 26 25 16 28 28 C 1.53004 * 110.72146 * 263.83353 * 26 25 16 29 29 C 1.47016 * 111.00180 * 175.32084 * 4 2 1 30 30 H 1.08994 * 109.46971 * 299.99566 * 1 2 3 31 31 H 1.09004 * 109.47264 * 59.99880 * 1 2 3 32 32 H 1.08997 * 109.47355 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47404 * 239.99889 * 2 1 3 34 34 H 1.08998 * 109.47355 * 300.00512 * 3 2 1 35 35 H 1.09009 * 109.47004 * 59.99866 * 3 2 1 36 36 H 1.08993 * 109.47554 * 179.97438 * 3 2 1 37 37 H 1.08998 * 109.50881 * 57.67265 * 5 4 2 38 38 H 1.09006 * 109.50427 * 297.53876 * 5 4 2 39 39 H 1.08999 * 109.50643 * 296.91069 * 6 5 4 40 40 H 1.08998 * 109.54200 * 176.80489 * 6 5 4 41 41 H 0.96992 * 120.00490 * 359.97438 * 12 10 8 42 42 H 1.08999 * 110.49555 * 160.34793 * 15 13 12 43 43 H 1.09000 * 110.33859 * 37.95952 * 15 13 12 44 44 H 0.97003 * 119.99291 * 354.29123 * 20 19 17 45 45 H 1.09001 * 109.88073 * 120.70925 * 25 16 15 46 46 H 1.09004 * 109.88323 * 241.87205 * 25 16 15 47 47 H 1.08997 * 109.46945 * 61.45561 * 27 26 25 48 48 H 1.08998 * 109.46949 * 181.45768 * 27 26 25 49 49 H 1.09001 * 109.46784 * 301.45562 * 27 26 25 50 50 H 1.08995 * 109.47135 * 58.54399 * 28 26 25 51 51 H 1.09003 * 109.46661 * 178.54450 * 28 26 25 52 52 H 1.09000 * 109.46847 * 298.54282 * 28 26 25 53 53 H 1.08991 * 109.50737 * 62.45432 * 29 4 2 54 54 H 1.09002 * 109.50179 * 302.32455 * 29 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 1.5688 -0.0116 2.4219 6 6 2.0498 -0.7978 3.6444 7 8 3.4730 -0.9287 3.5910 8 6 3.9467 -1.5881 2.4137 9 1 3.5456 -2.6010 2.3774 10 6 5.4525 -1.6437 2.4394 11 8 6.0648 -1.0875 3.3264 12 7 6.1187 -2.3115 1.4768 13 6 7.5825 -2.3660 1.5021 14 1 7.9547 -2.3394 2.5263 15 6 8.2011 -1.2212 0.6575 16 7 8.1303 -1.7021 -0.7343 17 6 8.1112 -0.9112 -1.8520 18 1 7.8432 -1.3347 -2.8086 19 6 8.4364 0.4348 -1.7554 20 7 7.9844 1.2870 -2.6507 21 14 9.5094 1.0379 -0.3502 22 1 8.6514 1.4117 0.8027 23 1 10.4438 -0.0418 0.0577 24 1 10.2862 2.2232 -0.7941 25 6 8.0899 -3.1718 -0.7237 26 6 8.1054 -3.6200 0.7529 27 6 7.1669 -4.8093 0.9674 28 6 9.5279 -3.9635 1.1995 29 6 3.4850 -0.8099 1.1787 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.6767 1.9564 -0.8899 35 1 1.6767 1.9563 0.8901 36 1 3.1300 1.4425 0.0005 37 1 0.4802 0.0414 2.4286 38 1 1.9833 0.9962 2.4511 39 1 1.5930 -1.7874 3.6435 40 1 1.7670 -0.2672 4.5535 41 1 5.6291 -2.7565 0.7676 42 1 9.2378 -1.0502 0.9476 43 1 7.6183 -0.3074 0.7732 44 1 7.4939 0.9644 -3.4229 45 1 7.1779 -3.5210 -1.2077 46 1 8.9626 -3.5703 -1.2412 47 1 7.5034 -5.6513 0.3626 48 1 7.1738 -5.0922 2.0200 49 1 6.1551 -4.5314 0.6724 50 1 10.1704 -3.0931 1.0672 51 1 9.5189 -4.2521 2.2506 52 1 9.9076 -4.7901 0.5990 53 1 3.9299 0.1850 1.1880 54 1 3.7949 -1.3395 0.2778 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000974965920.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:50:13 Heat of formation + Delta-G solvation = -69.827627 kcal Electronic energy + Delta-G solvation = -32633.160161 eV Core-core repulsion = 28604.888611 eV Total energy + Delta-G solvation = -4028.271550 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.77969 -40.77943 -39.41993 -37.76809 -35.84823 -34.77300 -33.27867 -33.01223 -32.42429 -30.05003 -28.43206 -28.19816 -27.64666 -27.61073 -25.56774 -24.70512 -23.22200 -22.54558 -21.45220 -20.59730 -20.30131 -19.41804 -18.50889 -18.01689 -17.26232 -17.09260 -16.81576 -16.62075 -16.18514 -15.93090 -15.72621 -15.54181 -15.25950 -15.22729 -15.11842 -14.87662 -14.56879 -14.30030 -13.98705 -13.89464 -13.79978 -13.21535 -13.20311 -13.11694 -13.04738 -13.00818 -12.80462 -12.71505 -12.43784 -12.39245 -12.14907 -11.91850 -11.87067 -11.80090 -11.67539 -11.64291 -11.49048 -11.35368 -10.89217 -10.76760 -10.73594 -10.12181 -9.51113 -9.13808 -8.61393 -5.44766 1.34017 1.38157 1.41354 1.56454 1.75268 2.44363 2.60889 2.97634 3.02632 3.33324 3.41066 3.57971 3.63448 3.75079 3.82730 3.88168 3.91097 3.97631 4.10675 4.17079 4.24770 4.25929 4.31211 4.37549 4.43453 4.47265 4.60658 4.61548 4.63984 4.68920 4.71441 4.80151 4.84010 4.87191 4.87986 4.93794 4.95348 4.99806 5.03774 5.11783 5.19176 5.21799 5.32397 5.32585 5.39109 5.51645 5.59152 5.78621 5.90817 5.98008 6.10743 6.45004 6.79874 7.11026 7.47429 8.11977 8.85795 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.010154 B = 0.004449 C = 0.003677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2756.991528 B = 6291.720302 C = 7612.109824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.073 3.927 3 C -0.187 4.187 4 N -0.517 5.517 5 C 0.006 3.994 6 C 0.059 3.941 7 O -0.387 6.387 8 C 0.092 3.908 9 H 0.122 0.878 10 C 0.517 3.483 11 O -0.568 6.568 12 N -0.692 5.692 13 C 0.148 3.852 14 H 0.101 0.899 15 C 0.095 3.905 16 N -0.619 5.619 17 C -0.302 4.302 18 H 0.053 0.947 19 C -0.070 4.070 20 N -0.959 5.959 21 Si 1.091 2.909 22 H -0.298 1.298 23 H -0.262 1.262 24 H -0.303 1.303 25 C 0.137 3.863 26 C -0.071 4.071 27 C -0.125 4.125 28 C -0.131 4.131 29 C 0.033 3.967 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.079 0.921 34 H 0.072 0.928 35 H 0.064 0.936 36 H 0.026 0.974 37 H 0.119 0.881 38 H 0.032 0.968 39 H 0.080 0.920 40 H 0.120 0.880 41 H 0.412 0.588 42 H 0.036 0.964 43 H 0.025 0.975 44 H 0.250 0.750 45 H 0.037 0.963 46 H 0.030 0.970 47 H 0.076 0.924 48 H 0.072 0.928 49 H 0.059 0.941 50 H 0.038 0.962 51 H 0.077 0.923 52 H 0.078 0.922 53 H 0.019 0.981 54 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.068 -12.363 10.669 22.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.035 4.035 3 C -0.246 4.246 4 N -0.242 5.242 5 C -0.121 4.121 6 C -0.017 4.017 7 O -0.305 6.305 8 C 0.031 3.969 9 H 0.140 0.860 10 C 0.303 3.697 11 O -0.446 6.446 12 N -0.344 5.344 13 C 0.042 3.958 14 H 0.119 0.881 15 C -0.031 4.031 16 N -0.346 5.346 17 C -0.431 4.431 18 H 0.071 0.929 19 C -0.264 4.264 20 N -0.603 5.603 21 Si 0.921 3.079 22 H -0.226 1.226 23 H -0.187 1.187 24 H -0.231 1.231 25 C 0.012 3.988 26 C -0.072 4.072 27 C -0.183 4.183 28 C -0.189 4.189 29 C -0.096 4.096 30 H 0.084 0.916 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.097 0.903 34 H 0.091 0.909 35 H 0.083 0.917 36 H 0.046 0.954 37 H 0.137 0.863 38 H 0.050 0.950 39 H 0.098 0.902 40 H 0.138 0.862 41 H 0.249 0.751 42 H 0.053 0.947 43 H 0.043 0.957 44 H 0.060 0.940 45 H 0.055 0.945 46 H 0.049 0.951 47 H 0.095 0.905 48 H 0.091 0.909 49 H 0.078 0.922 50 H 0.057 0.943 51 H 0.096 0.904 52 H 0.097 0.903 53 H 0.038 0.962 54 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -14.077 -11.021 12.045 21.557 hybrid contribution -0.185 0.180 -1.977 1.994 sum -14.262 -10.841 10.067 20.549 Atomic orbital electron populations 1.21799 0.91566 1.03123 1.02695 1.21820 0.97582 0.91686 0.92458 1.22468 1.00020 0.98982 1.03100 1.62600 1.07695 1.50915 1.02956 1.23023 1.02975 0.96119 0.90006 1.23022 0.78854 1.01414 0.98411 1.88085 1.23790 1.79353 1.39317 1.21840 0.89875 0.98995 0.86225 0.86044 1.20613 0.89948 0.77766 0.81385 1.90681 1.70422 1.45598 1.37885 1.45645 1.06841 1.53949 1.27965 1.22066 0.79559 0.95045 0.99146 0.88141 1.22442 0.97750 0.97004 0.85905 1.44803 1.87321 1.02142 1.00365 1.19904 1.42370 0.92721 0.88132 0.92915 1.26652 1.01474 0.92647 1.05673 1.71004 1.39861 1.35102 1.14346 0.83483 0.76345 0.75146 0.72961 1.22570 1.18737 1.23141 1.21699 0.98813 0.83004 0.95235 1.21864 0.97967 0.94128 0.93261 1.21703 0.97892 0.95724 1.02978 1.21757 0.93140 1.01565 1.02422 1.22544 0.89977 0.99055 0.98038 0.91644 0.91191 0.91056 0.90308 0.90948 0.91733 0.95443 0.86287 0.94984 0.90167 0.86206 0.75087 0.94697 0.95725 0.93994 0.94511 0.95146 0.90465 0.90950 0.92202 0.94266 0.90413 0.90265 0.96233 0.88931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.95 8.99 71.98 0.65 -1.30 16 2 C 0.07 1.51 2.97 44.91 0.13 1.65 16 3 C -0.19 -4.54 8.49 71.98 0.61 -3.93 16 4 N -0.52 -11.27 4.72 -869.97 -4.11 -15.38 16 5 C 0.01 0.12 4.86 86.31 0.42 0.54 16 6 C 0.06 1.12 7.01 72.01 0.50 1.63 16 7 O -0.39 -11.31 10.01 -130.02 -1.30 -12.61 16 8 C 0.09 2.51 3.22 29.88 0.10 2.61 16 9 H 0.12 2.51 8.14 -2.39 -0.02 2.49 16 10 C 0.52 17.66 7.18 87.66 0.63 18.29 16 11 O -0.57 -24.50 16.15 15.94 0.26 -24.24 16 12 N -0.69 -21.36 4.49 -435.58 -1.96 -23.32 16 13 C 0.15 5.01 2.67 46.46 0.12 5.13 16 14 H 0.10 3.41 7.44 -2.38 -0.02 3.39 16 15 C 0.10 4.25 4.08 86.93 0.35 4.60 16 16 N -0.62 -29.20 3.26 -691.55 -2.26 -31.46 16 17 C -0.30 -17.29 10.45 84.03 0.88 -16.41 16 18 H 0.05 3.20 8.06 -2.91 -0.02 3.18 16 19 C -0.07 -4.22 5.43 84.86 0.46 -3.76 16 20 N -0.96 -62.26 13.70 21.65 0.30 -61.96 16 21 Si 1.09 57.49 24.68 68.60 1.69 59.18 16 22 H -0.30 -15.78 6.61 99.48 0.66 -15.12 16 23 H -0.26 -12.59 6.20 99.48 0.62 -11.97 16 24 H -0.30 -16.04 7.11 99.48 0.71 -15.33 16 25 C 0.14 4.92 6.41 86.73 0.56 5.47 16 26 C -0.07 -1.95 0.80 -50.99 -0.04 -1.99 16 27 C -0.13 -2.41 8.16 71.98 0.59 -1.82 16 28 C -0.13 -3.20 8.44 71.98 0.61 -2.59 16 29 C 0.03 0.92 4.54 86.32 0.39 1.31 16 30 H 0.06 0.82 6.37 -2.39 -0.02 0.81 16 31 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.08 1.78 8.13 -2.39 -0.02 1.76 16 34 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.06 1.44 6.44 -2.38 -0.02 1.43 16 36 H 0.03 0.84 6.57 -2.39 -0.02 0.83 16 37 H 0.12 1.59 6.21 -2.39 -0.01 1.58 16 38 H 0.03 0.74 6.43 -2.38 -0.02 0.72 16 39 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.12 1.80 8.14 -2.39 -0.02 1.78 16 41 H 0.41 10.87 7.01 -92.71 -0.65 10.22 16 42 H 0.04 1.61 5.10 -2.39 -0.01 1.60 16 43 H 0.02 1.28 6.25 -2.39 -0.01 1.27 16 44 H 0.25 16.17 8.73 -92.71 -0.81 15.36 16 45 H 0.04 1.27 7.82 -2.39 -0.02 1.25 16 46 H 0.03 1.11 7.84 -2.38 -0.02 1.10 16 47 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 48 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 49 H 0.06 1.09 6.34 -2.39 -0.02 1.08 16 50 H 0.04 1.14 7.42 -2.39 -0.02 1.12 16 51 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 52 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 53 H 0.02 0.69 6.55 -2.39 -0.02 0.67 16 54 H 0.09 2.54 8.02 -2.39 -0.02 2.52 16 Total: -1.00 -78.08 398.76 -0.35 -78.43 By element: Atomic # 1 Polarization: 21.87 SS G_CDS: 0.06 Total: 21.93 kcal Atomic # 6 Polarization: 2.48 SS G_CDS: 6.96 Total: 9.44 kcal Atomic # 7 Polarization: -124.10 SS G_CDS: -8.02 Total: -132.12 kcal Atomic # 8 Polarization: -35.81 SS G_CDS: -1.04 Total: -36.85 kcal Atomic # 14 Polarization: 57.49 SS G_CDS: 1.69 Total: 59.18 kcal Total: -78.08 -0.35 -78.43 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974965920.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.599 kcal (2) G-P(sol) polarization free energy of solvation -78.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds