Wall clock time and date at job start Sat Apr 11 2020 05:50:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53005 * 109.47057 * 2 1 4 4 N 1.46898 * 109.47413 * 119.99967 * 2 1 3 5 5 C 1.47014 * 110.99724 * 56.04480 * 4 2 1 6 6 C 1.53106 * 109.25706 * 177.61257 * 5 4 2 7 7 O 1.43013 * 109.26002 * 56.84839 * 6 5 4 8 8 C 1.43012 * 113.74064 * 301.33091 * 7 6 5 9 9 H 1.08994 * 109.50936 * 298.69618 * 8 7 6 10 10 C 1.50700 * 109.50736 * 178.60277 * 8 7 6 11 11 O 1.21283 * 119.99916 * 352.56831 * 10 8 7 12 12 N 1.34775 * 119.99732 * 172.56766 * 10 8 7 13 13 C 1.48148 * 127.83425 * 175.08040 * 12 10 8 14 14 C 1.54388 * 104.61703 * 140.41756 * 13 12 10 15 15 H 1.09000 * 110.34176 * 264.99069 * 14 13 12 16 16 N 1.46496 * 110.34283 * 142.73650 * 14 13 12 17 17 C 1.36940 * 120.00023 * 89.46388 * 16 14 13 18 18 H 1.08003 * 119.99842 * 359.97438 * 17 16 14 19 19 C 1.38812 * 120.00172 * 180.02562 * 17 16 14 20 20 N 1.31622 * 119.99892 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00166 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.46980 * 359.97438 * 21 19 17 23 23 H 1.48505 * 109.47201 * 119.99552 * 21 19 17 24 24 H 1.48498 * 109.47118 * 239.99690 * 21 19 17 25 25 C 1.54280 * 104.96113 * 23.86264 * 14 13 12 26 26 C 1.53002 * 110.34072 * 118.86953 * 25 14 13 27 27 C 1.52993 * 110.34826 * 241.02445 * 25 14 13 28 28 C 1.48314 * 127.77235 * 355.01048 * 12 10 8 29 29 C 1.47019 * 110.99883 * 292.41828 * 4 2 1 30 30 H 1.08994 * 109.47947 * 299.99937 * 1 2 3 31 31 H 1.09005 * 109.47336 * 60.00215 * 1 2 3 32 32 H 1.09002 * 109.47016 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.47760 * 240.00148 * 2 1 3 34 34 H 1.08995 * 109.46907 * 179.97438 * 3 2 1 35 35 H 1.08999 * 109.47180 * 300.00374 * 3 2 1 36 36 H 1.08999 * 109.46892 * 59.99989 * 3 2 1 37 37 H 1.09002 * 109.50438 * 57.67803 * 5 4 2 38 38 H 1.08996 * 109.51017 * 297.54654 * 5 4 2 39 39 H 1.09007 * 109.50090 * 296.91377 * 6 5 4 40 40 H 1.09003 * 109.54257 * 176.80924 * 6 5 4 41 41 H 1.09005 * 110.41049 * 21.63081 * 13 12 10 42 42 H 1.09001 * 110.50760 * 259.25309 * 13 12 10 43 43 H 0.97000 * 120.00261 * 269.46211 * 16 14 13 44 44 H 0.96994 * 120.00208 * 180.02562 * 20 19 17 45 45 H 1.08998 * 109.47093 * 181.47558 * 26 25 14 46 46 H 1.08997 * 109.47441 * 301.47777 * 26 25 14 47 47 H 1.09008 * 109.47035 * 61.47884 * 26 25 14 48 48 H 1.09003 * 109.47037 * 298.52854 * 27 25 14 49 49 H 1.09000 * 109.47145 * 58.52192 * 27 25 14 50 50 H 1.08998 * 109.48065 * 178.52515 * 27 25 14 51 51 H 1.08996 * 110.38082 * 100.79205 * 28 12 10 52 52 H 1.08990 * 110.50577 * 338.30639 * 28 12 10 53 53 H 1.09000 * 109.51004 * 62.44968 * 29 4 2 54 54 H 1.09007 * 109.50377 * 302.31933 * 29 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 1.4725 -2.0545 1.2816 6 6 2.0537 -2.7588 2.5106 7 8 1.7620 -1.9868 3.6786 8 6 2.2807 -0.6548 3.6327 9 1 3.3672 -0.6898 3.5536 10 6 1.8909 0.0806 4.8890 11 8 1.1237 -0.4302 5.6773 12 7 2.3949 1.3058 5.1364 13 6 2.0574 2.2186 6.2534 14 6 3.4073 2.8429 6.6678 15 1 3.8440 2.2855 7.4966 16 7 3.2262 4.2487 7.0376 17 6 2.9339 4.5839 8.3328 18 1 2.8366 3.8116 9.0816 19 6 2.7617 5.9160 8.6832 20 7 2.8798 6.8570 7.7705 21 14 2.3623 6.3730 10.4498 22 1 2.2836 5.1405 11.2743 23 1 3.4269 7.2596 10.9845 24 1 1.0584 7.0823 10.4949 25 6 4.3004 2.7286 5.4150 26 6 4.7268 4.1181 4.9373 27 6 5.5304 1.8696 5.7149 28 6 3.4142 2.0443 4.3519 29 6 1.7018 0.0708 2.4151 30 1 -0.3635 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 3.1299 1.4425 0.0005 35 1 1.6765 1.9564 -0.8899 36 1 1.6766 1.9563 0.8900 37 1 1.7414 -2.6096 0.3829 38 1 0.3872 -2.0061 1.3692 39 1 3.1336 -2.8550 2.3981 40 1 1.6082 -3.7489 2.6081 41 1 1.6261 1.6598 7.0840 42 1 1.3674 2.9931 5.9185 43 1 3.3132 4.9423 6.3651 44 1 2.7599 7.7879 8.0154 45 1 5.3347 4.0224 4.0376 46 1 3.8414 4.7139 4.7158 47 1 5.3084 4.6082 5.7182 48 1 6.1188 2.3402 6.5026 49 1 5.2114 0.8799 6.0419 50 1 6.1372 1.7767 4.8143 51 1 2.9371 2.7908 3.7170 52 1 4.0062 1.3548 3.7503 53 1 0.6201 0.1532 2.5208 54 1 2.1381 1.0671 2.3438 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996183663.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:50:24 Heat of formation + Delta-G solvation = -66.650977 kcal Electronic energy + Delta-G solvation = -32135.904128 eV Core-core repulsion = 28107.770328 eV Total energy + Delta-G solvation = -4028.133800 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.78093 -40.63164 -39.24746 -37.74382 -35.97132 -34.53096 -32.99122 -32.80329 -32.42431 -29.51012 -28.31301 -28.18575 -27.70336 -27.20147 -25.96263 -25.27824 -23.32580 -22.59116 -20.64940 -20.47667 -19.92786 -19.25430 -18.44044 -17.62718 -17.38844 -17.00766 -16.47515 -16.35893 -16.08470 -15.88450 -15.73044 -15.56148 -15.29894 -14.98161 -14.95093 -14.65117 -14.55779 -14.02098 -13.94430 -13.86222 -13.32119 -13.23766 -13.03146 -13.02125 -12.89791 -12.83694 -12.73129 -12.67527 -12.50957 -12.34901 -12.11652 -12.09525 -12.01715 -11.97066 -11.82452 -11.49148 -11.46089 -11.32651 -10.98083 -10.84276 -10.74595 -9.83342 -9.41928 -9.01221 -7.95838 -5.23374 1.40462 1.46032 1.47867 1.56028 1.58448 2.55033 2.66954 2.88235 3.35351 3.46684 3.55808 3.64919 3.80762 3.84605 3.88816 3.96706 4.01155 4.12030 4.15082 4.22956 4.34072 4.35105 4.40101 4.41349 4.48276 4.51923 4.55167 4.65790 4.70743 4.77059 4.77370 4.82241 4.88856 4.90812 4.94169 4.98492 4.99389 5.05164 5.08350 5.12790 5.19007 5.29385 5.35472 5.36264 5.49503 5.51472 5.61775 5.85257 5.98692 6.02642 6.27530 6.49866 7.01379 7.35684 8.08140 8.34790 9.26872 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.016479 B = 0.002890 C = 0.002778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1698.710135 B = 9686.336530 C =10077.624122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.077 3.923 3 C -0.151 4.151 4 N -0.523 5.523 5 C 0.012 3.988 6 C 0.057 3.943 7 O -0.391 6.391 8 C 0.093 3.907 9 H 0.112 0.888 10 C 0.532 3.468 11 O -0.580 6.580 12 N -0.609 5.609 13 C 0.093 3.907 14 C 0.171 3.829 15 H 0.049 0.951 16 N -0.722 5.722 17 C -0.244 4.244 18 H 0.067 0.933 19 C -0.065 4.065 20 N -0.961 5.961 21 Si 0.964 3.036 22 H -0.273 1.273 23 H -0.291 1.291 24 H -0.295 1.295 25 C -0.080 4.080 26 C -0.122 4.122 27 C -0.127 4.127 28 C 0.112 3.888 29 C 0.033 3.967 30 H 0.037 0.963 31 H 0.075 0.925 32 H 0.059 0.941 33 H 0.105 0.895 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.047 0.953 37 H 0.115 0.885 38 H 0.039 0.961 39 H 0.075 0.925 40 H 0.117 0.883 41 H 0.047 0.953 42 H 0.060 0.940 43 H 0.386 0.614 44 H 0.252 0.748 45 H 0.085 0.915 46 H 0.044 0.956 47 H 0.043 0.957 48 H 0.048 0.952 49 H 0.049 0.951 50 H 0.087 0.913 51 H 0.086 0.914 52 H 0.113 0.887 53 H 0.028 0.972 54 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.464 -16.209 -21.957 27.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.031 4.031 3 C -0.209 4.209 4 N -0.248 5.248 5 C -0.115 4.115 6 C -0.019 4.019 7 O -0.310 6.310 8 C 0.032 3.968 9 H 0.130 0.870 10 C 0.321 3.679 11 O -0.459 6.459 12 N -0.343 5.343 13 C -0.033 4.033 14 C 0.060 3.940 15 H 0.067 0.933 16 N -0.364 5.364 17 C -0.376 4.376 18 H 0.085 0.915 19 C -0.258 4.258 20 N -0.611 5.611 21 Si 0.794 3.206 22 H -0.198 1.198 23 H -0.218 1.218 24 H -0.222 1.222 25 C -0.082 4.082 26 C -0.179 4.179 27 C -0.185 4.185 28 C -0.010 4.010 29 C -0.096 4.096 30 H 0.056 0.944 31 H 0.094 0.906 32 H 0.078 0.922 33 H 0.123 0.877 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.066 0.934 37 H 0.133 0.867 38 H 0.057 0.943 39 H 0.093 0.907 40 H 0.135 0.865 41 H 0.066 0.934 42 H 0.078 0.922 43 H 0.223 0.777 44 H 0.061 0.939 45 H 0.104 0.896 46 H 0.063 0.937 47 H 0.062 0.938 48 H 0.067 0.933 49 H 0.068 0.932 50 H 0.106 0.894 51 H 0.104 0.896 52 H 0.131 0.869 53 H 0.046 0.954 54 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 3.401 -16.697 -21.262 27.248 hybrid contribution -1.601 1.047 1.312 2.320 sum 1.800 -15.650 -19.950 25.420 Atomic orbital electron populations 1.22486 0.97747 1.02178 1.02227 1.21848 0.92592 0.95930 0.92709 1.21962 1.02436 0.94260 1.02219 1.62588 1.58405 1.02314 1.01464 1.22923 0.97895 0.90215 1.00507 1.23027 1.01508 0.94658 0.82756 1.88087 1.78400 1.22853 1.41681 1.21805 1.00093 0.83920 0.90968 0.87046 1.20377 0.80047 0.79952 0.87552 1.90686 1.37962 1.67150 1.50092 1.48938 1.41807 1.14982 1.28601 1.23193 1.00296 0.91108 0.88710 1.21247 0.91851 0.85390 0.95498 0.93311 1.42791 1.83854 1.02042 1.07749 1.19604 1.38693 0.91685 0.87624 0.91470 1.25394 1.03481 0.95860 1.01032 1.69776 1.58101 0.99577 1.33670 0.85215 0.76880 0.77761 0.80744 1.19754 1.21805 1.22222 1.21714 0.95609 0.96835 0.94031 1.21584 1.00904 0.94218 1.01230 1.21781 0.95861 0.98182 1.02629 1.22851 0.88739 0.95840 0.93534 1.22635 0.98704 0.98984 0.89267 0.94367 0.90643 0.92178 0.87718 0.90906 0.90832 0.93424 0.86691 0.94320 0.90660 0.86463 0.93418 0.92189 0.77668 0.93931 0.89639 0.93684 0.93759 0.93317 0.93195 0.89441 0.89617 0.86904 0.95356 0.87308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.54 8.46 71.98 0.61 -1.94 16 2 C 0.08 0.94 3.11 44.92 0.14 1.08 16 3 C -0.15 -1.77 8.71 71.98 0.63 -1.14 16 4 N -0.52 -7.95 4.79 -869.93 -4.16 -12.12 16 5 C 0.01 0.17 5.08 86.32 0.44 0.61 16 6 C 0.06 0.93 7.01 72.02 0.50 1.43 16 7 O -0.39 -10.61 10.01 -130.08 -1.30 -11.91 16 8 C 0.09 2.30 2.55 29.88 0.08 2.37 16 9 H 0.11 2.22 7.47 -2.39 -0.02 2.20 16 10 C 0.53 17.87 7.25 87.66 0.64 18.51 16 11 O -0.58 -25.51 16.77 15.86 0.27 -25.24 16 12 N -0.61 -18.98 3.32 -807.52 -2.68 -21.66 16 13 C 0.09 3.59 6.79 86.53 0.59 4.18 16 14 C 0.17 6.61 3.35 45.90 0.15 6.77 16 15 H 0.05 2.03 7.66 -2.39 -0.02 2.01 16 16 N -0.72 -34.55 4.59 -318.66 -1.46 -36.01 16 17 C -0.24 -13.34 9.96 84.03 0.84 -12.50 16 18 H 0.07 3.65 7.83 -2.91 -0.02 3.63 16 19 C -0.06 -3.64 5.50 84.86 0.47 -3.17 16 20 N -0.96 -56.70 13.06 21.65 0.28 -56.42 16 21 Si 0.96 46.11 29.55 68.60 2.03 48.13 16 22 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 23 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 24 H -0.29 -14.18 7.11 99.48 0.71 -13.47 16 25 C -0.08 -2.25 1.03 -51.28 -0.05 -2.30 16 26 C -0.12 -3.47 7.11 71.98 0.51 -2.96 16 27 C -0.13 -3.00 8.23 71.98 0.59 -2.41 16 28 C 0.11 2.60 4.66 86.50 0.40 3.00 16 29 C 0.03 0.66 4.01 86.32 0.35 1.01 16 30 H 0.04 0.68 6.66 -2.39 -0.02 0.66 16 31 H 0.07 0.84 8.14 -2.38 -0.02 0.82 16 32 H 0.06 0.80 6.40 -2.39 -0.02 0.78 16 33 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.05 0.68 6.27 -2.39 -0.01 0.66 16 37 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.04 0.64 6.39 -2.39 -0.02 0.63 16 39 H 0.08 1.02 8.14 -2.38 -0.02 1.00 16 40 H 0.12 1.50 8.14 -2.39 -0.02 1.48 16 41 H 0.05 2.06 7.85 -2.38 -0.02 2.05 16 42 H 0.06 2.49 8.06 -2.39 -0.02 2.47 16 43 H 0.39 19.09 5.09 -92.71 -0.47 18.62 16 44 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 45 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 46 H 0.04 1.44 6.86 -2.39 -0.02 1.43 16 47 H 0.04 1.52 7.84 -2.38 -0.02 1.51 16 48 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 49 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 50 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 51 H 0.09 1.84 7.81 -2.39 -0.02 1.82 16 52 H 0.11 1.83 6.77 -2.39 -0.02 1.82 16 53 H 0.03 0.71 6.64 -2.39 -0.02 0.69 16 54 H 0.11 1.96 4.68 -2.38 -0.01 1.95 16 Total: -1.00 -72.45 404.36 0.25 -72.20 By element: Atomic # 1 Polarization: 30.08 SS G_CDS: 0.41 Total: 30.49 kcal Atomic # 6 Polarization: 5.66 SS G_CDS: 6.88 Total: 12.54 kcal Atomic # 7 Polarization: -118.18 SS G_CDS: -8.02 Total: -126.21 kcal Atomic # 8 Polarization: -36.12 SS G_CDS: -1.04 Total: -37.15 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 2.03 Total: 48.13 kcal Total: -72.45 0.25 -72.20 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996183663.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.546 kcal (2) G-P(sol) polarization free energy of solvation -72.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds