Wall clock time and date at job start Sat Apr 11 2020 05:50:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47370 * 2 1 4 4 N 1.46900 * 109.47527 * 120.00386 * 2 1 3 5 5 C 1.47015 * 110.99862 * 51.35994 * 4 2 1 6 6 C 1.53101 * 109.25764 * 182.39629 * 5 4 2 7 7 O 1.43014 * 109.29131 * 303.17566 * 6 5 4 8 8 C 1.43014 * 113.74073 * 58.59980 * 7 6 5 9 9 H 1.09006 * 109.50835 * 61.35556 * 8 7 6 10 10 C 1.50700 * 109.50958 * 181.44025 * 8 7 6 11 11 O 1.21279 * 120.00113 * 4.91501 * 10 8 7 12 12 N 1.34784 * 119.99961 * 184.91269 * 10 8 7 13 13 C 1.47421 * 125.64843 * 359.69671 * 12 10 8 14 14 C 1.55129 * 104.72458 * 155.81647 * 13 12 10 15 15 H 1.09004 * 111.19138 * 279.18827 * 14 13 12 16 16 N 1.46497 * 110.93854 * 155.28605 * 14 13 12 17 17 C 1.36932 * 119.99838 * 92.96112 * 16 14 13 18 18 H 1.07996 * 120.00652 * 359.97438 * 17 16 14 19 19 C 1.38822 * 119.99903 * 179.97438 * 17 16 14 20 20 N 1.31614 * 120.00048 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 119.99815 * 179.97438 * 19 17 16 22 22 H 1.48491 * 109.47385 * 90.00292 * 21 19 17 23 23 H 1.48503 * 109.46872 * 210.00031 * 21 19 17 24 24 H 1.48503 * 109.47380 * 329.99646 * 21 19 17 25 25 C 1.55159 * 101.48377 * 37.29063 * 14 13 12 26 26 C 1.52997 * 110.71844 * 205.97045 * 25 14 13 27 27 C 1.52998 * 110.87015 * 82.76922 * 25 14 13 28 28 C 1.47018 * 125.64722 * 180.02562 * 12 10 8 29 29 C 1.47007 * 111.00465 * 174.99980 * 4 2 1 30 30 H 1.08993 * 109.46827 * 300.00093 * 1 2 3 31 31 H 1.09004 * 109.47152 * 60.00033 * 1 2 3 32 32 H 1.08997 * 109.47220 * 180.02562 * 1 2 3 33 33 H 1.09006 * 109.47362 * 240.00271 * 2 1 3 34 34 H 1.08993 * 109.47222 * 60.00149 * 3 2 1 35 35 H 1.09001 * 109.47596 * 180.02562 * 3 2 1 36 36 H 1.09004 * 109.46956 * 300.00087 * 3 2 1 37 37 H 1.09000 * 109.50493 * 302.33139 * 5 4 2 38 38 H 1.08998 * 109.50545 * 62.46174 * 5 4 2 39 39 H 1.09000 * 109.50077 * 63.08465 * 6 5 4 40 40 H 1.08990 * 109.50526 * 183.17493 * 6 5 4 41 41 H 1.09005 * 110.36058 * 274.74476 * 13 12 10 42 42 H 1.08997 * 110.36930 * 37.06604 * 13 12 10 43 43 H 0.97001 * 120.00016 * 272.95506 * 16 14 13 44 44 H 0.96997 * 120.00416 * 180.02562 * 20 19 17 45 45 H 1.09001 * 109.47256 * 174.97889 * 26 25 14 46 46 H 1.08996 * 109.47192 * 294.97399 * 26 25 14 47 47 H 1.09000 * 109.47363 * 54.97645 * 26 25 14 48 48 H 1.08998 * 109.47281 * 304.93523 * 27 25 14 49 49 H 1.09001 * 109.47501 * 64.93450 * 27 25 14 50 50 H 1.08999 * 109.47256 * 184.93184 * 27 25 14 51 51 H 1.09010 * 109.88204 * 300.44210 * 28 12 10 52 52 H 1.09004 * 109.88434 * 61.44920 * 28 12 10 53 53 H 1.09005 * 109.50885 * 57.66847 * 29 4 2 54 54 H 1.09009 * 109.50812 * 297.54233 * 29 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6926 1.1994 5 6 1.3874 -2.0122 1.3408 6 6 1.8798 -2.6723 2.6315 7 8 3.3072 -2.7560 2.6045 8 6 3.9558 -1.4888 2.4672 9 1 3.7040 -0.8568 3.3190 10 6 5.4483 -1.6904 2.4141 11 8 5.9084 -2.8124 2.3967 12 7 6.2718 -0.6238 2.3859 13 6 5.8492 0.7885 2.3959 14 6 7.0659 1.5601 2.9711 15 1 7.0915 1.5008 4.0592 16 7 7.0599 2.9552 2.5240 17 6 6.4685 3.9191 3.2962 18 1 6.0061 3.6509 4.2346 19 6 6.4634 5.2412 2.8728 20 7 7.0274 5.5682 1.7295 21 14 5.6560 6.5559 3.9259 22 1 6.6569 7.1208 4.8661 23 1 5.1319 7.6367 3.0527 24 1 4.5371 5.9554 4.6959 25 6 8.2512 0.7800 2.3435 26 6 9.5041 0.9083 3.2121 27 6 8.5301 1.2652 0.9195 28 6 7.7401 -0.6761 2.3333 29 6 3.4843 -0.8166 1.1750 30 1 -0.3633 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.6768 1.9563 0.8899 35 1 3.1300 1.4425 -0.0005 36 1 1.6767 1.9563 -0.8900 37 1 0.3046 -1.8943 1.3825 38 1 1.6536 -2.6367 0.4881 39 1 1.5669 -2.0751 3.4879 40 1 1.4573 -3.6738 2.7121 41 1 5.6277 1.1253 1.3831 42 1 4.9789 0.9196 3.0390 43 1 7.4750 3.1962 1.6810 44 1 7.0241 6.4920 1.4338 45 1 10.2965 0.2824 2.8016 46 1 9.8322 1.9476 3.2253 47 1 9.2763 0.5862 4.2283 48 1 7.6185 1.1937 0.3262 49 1 8.8646 2.3022 0.9480 50 1 9.3058 0.6454 0.4699 51 1 8.1235 -1.2095 3.2033 52 1 8.0607 -1.1778 1.4202 53 1 3.9323 0.1739 1.0956 54 1 3.7842 -1.4220 0.3195 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996183669.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:50:26 Heat of formation + Delta-G solvation = -73.258373 kcal Electronic energy + Delta-G solvation = -32325.938169 eV Core-core repulsion = 28297.517851 eV Total energy + Delta-G solvation = -4028.420318 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.82863 -40.59389 -39.21496 -37.68214 -35.89281 -34.82118 -33.06312 -32.76984 -32.49993 -29.24540 -28.81878 -28.26814 -28.09758 -26.76862 -25.85195 -25.05507 -23.17092 -22.39704 -21.14238 -20.49921 -20.04669 -19.19039 -18.32690 -17.78970 -17.29931 -17.23291 -16.60227 -16.53888 -16.14344 -15.96867 -15.65100 -15.32395 -15.24333 -15.01075 -14.83166 -14.67416 -14.43906 -14.29519 -13.98336 -13.56122 -13.42606 -13.27856 -13.14643 -12.96919 -12.87031 -12.84021 -12.78033 -12.73719 -12.68715 -12.52319 -12.15844 -12.08652 -12.04544 -11.86527 -11.74546 -11.57828 -11.53417 -11.31346 -10.97583 -10.83018 -10.77278 -9.76270 -9.50298 -8.98815 -7.90535 -5.18778 1.36459 1.51943 1.53075 1.58958 1.60921 2.58028 2.59452 2.82949 3.34824 3.40793 3.58205 3.65290 3.75383 3.82590 3.86347 3.88005 3.95563 4.02800 4.13325 4.23612 4.28167 4.34284 4.36953 4.40670 4.42982 4.47292 4.55662 4.65287 4.67134 4.77373 4.79757 4.82703 4.84876 4.86927 4.90927 4.92979 4.99502 5.02934 5.06167 5.12948 5.18884 5.28014 5.29037 5.36077 5.43568 5.50583 5.59201 5.81597 5.95130 5.98092 6.30614 6.37136 6.97491 7.40102 8.11117 8.36872 9.32156 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.009011 B = 0.004249 C = 0.003213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3106.446823 B = 6588.481397 C = 8713.239028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.076 3.924 3 C -0.146 4.146 4 N -0.534 5.534 5 C 0.013 3.987 6 C 0.057 3.943 7 O -0.384 6.384 8 C 0.090 3.910 9 H 0.098 0.902 10 C 0.532 3.468 11 O -0.567 6.567 12 N -0.604 5.604 13 C 0.084 3.916 14 C 0.175 3.825 15 H 0.066 0.934 16 N -0.716 5.716 17 C -0.239 4.239 18 H 0.076 0.924 19 C -0.063 4.063 20 N -0.964 5.964 21 Si 0.962 3.038 22 H -0.291 1.291 23 H -0.299 1.299 24 H -0.270 1.270 25 C -0.078 4.078 26 C -0.125 4.125 27 C -0.128 4.128 28 C 0.123 3.877 29 C 0.035 3.965 30 H 0.064 0.936 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.038 0.962 34 H 0.060 0.940 35 H 0.041 0.959 36 H 0.072 0.928 37 H 0.119 0.881 38 H 0.037 0.963 39 H 0.069 0.931 40 H 0.125 0.875 41 H 0.066 0.934 42 H 0.074 0.926 43 H 0.382 0.618 44 H 0.250 0.750 45 H 0.073 0.927 46 H 0.049 0.951 47 H 0.059 0.941 48 H 0.046 0.954 49 H 0.051 0.949 50 H 0.074 0.926 51 H 0.073 0.927 52 H 0.070 0.930 53 H 0.096 0.904 54 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.794 -13.483 -2.145 16.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.031 4.031 3 C -0.203 4.203 4 N -0.260 5.260 5 C -0.115 4.115 6 C -0.019 4.019 7 O -0.303 6.303 8 C 0.029 3.971 9 H 0.115 0.885 10 C 0.320 3.680 11 O -0.446 6.446 12 N -0.338 5.338 13 C -0.042 4.042 14 C 0.064 3.936 15 H 0.084 0.916 16 N -0.356 5.356 17 C -0.371 4.371 18 H 0.094 0.906 19 C -0.256 4.256 20 N -0.614 5.614 21 Si 0.792 3.208 22 H -0.219 1.219 23 H -0.226 1.226 24 H -0.195 1.195 25 C -0.079 4.079 26 C -0.182 4.182 27 C -0.185 4.185 28 C 0.001 3.999 29 C -0.094 4.094 30 H 0.083 0.917 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.056 0.944 34 H 0.079 0.921 35 H 0.060 0.940 36 H 0.091 0.909 37 H 0.137 0.863 38 H 0.056 0.944 39 H 0.087 0.913 40 H 0.143 0.857 41 H 0.084 0.916 42 H 0.093 0.907 43 H 0.218 0.782 44 H 0.059 0.941 45 H 0.092 0.908 46 H 0.069 0.931 47 H 0.078 0.922 48 H 0.065 0.935 49 H 0.070 0.930 50 H 0.093 0.907 51 H 0.091 0.909 52 H 0.089 0.911 53 H 0.114 0.886 54 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -9.732 -13.921 -1.597 17.060 hybrid contribution 0.003 0.918 -0.661 1.131 sum -9.729 -13.003 -2.258 16.396 Atomic orbital electron populations 1.21909 0.92178 1.02811 1.03095 1.21712 0.97115 0.94632 0.89652 1.21861 1.00464 0.95284 1.02732 1.62313 1.03660 1.19724 1.40278 1.22987 1.01827 0.88778 0.97882 1.23037 0.78657 1.03107 0.97135 1.88057 1.20741 1.27087 1.94375 1.21747 0.88952 0.86839 0.99577 0.88454 1.20081 0.88313 0.83338 0.76245 1.90664 1.78074 1.24386 1.51473 1.48371 1.07523 1.06315 1.71553 1.23374 1.00694 0.78758 1.01345 1.21520 0.91428 0.83833 0.96844 0.91615 1.42501 1.67322 1.01369 1.24446 1.19580 1.27787 0.88181 1.01505 0.90571 1.25370 1.02563 0.99167 0.98473 1.69780 1.51070 1.17608 1.22925 0.85315 0.78302 0.79370 0.77808 1.21863 1.22620 1.19508 1.21812 0.96323 0.92664 0.97133 1.21654 0.95764 1.01985 0.98820 1.21651 1.01420 1.01170 0.94296 1.22107 0.78743 0.96808 1.02274 1.22601 0.90229 1.01342 0.95199 0.91681 0.90884 0.91305 0.94443 0.92129 0.94007 0.90883 0.86342 0.94421 0.91289 0.85671 0.91629 0.90714 0.78209 0.94097 0.90760 0.93146 0.92180 0.93518 0.93022 0.90748 0.90870 0.91123 0.88563 0.94960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 8.67 71.98 0.62 -1.45 16 2 C 0.08 1.51 2.68 44.91 0.12 1.63 16 3 C -0.15 -3.25 9.10 71.98 0.65 -2.60 16 4 N -0.53 -11.81 4.59 -869.97 -4.00 -15.81 16 5 C 0.01 0.23 5.11 86.31 0.44 0.67 16 6 C 0.06 1.11 7.01 72.02 0.50 1.61 16 7 O -0.38 -11.22 10.01 -130.02 -1.30 -12.52 16 8 C 0.09 2.60 2.56 29.88 0.08 2.68 16 9 H 0.10 2.67 7.62 -2.38 -0.02 2.65 16 10 C 0.53 17.91 7.24 87.66 0.63 18.55 16 11 O -0.57 -22.91 16.84 15.93 0.27 -22.65 16 12 N -0.60 -18.72 3.32 -811.35 -2.70 -21.42 16 13 C 0.08 2.69 4.71 86.93 0.41 3.10 16 14 C 0.17 6.18 2.97 46.46 0.14 6.32 16 15 H 0.07 2.39 7.99 -2.39 -0.02 2.37 16 16 N -0.72 -31.89 5.15 -316.01 -1.63 -33.52 16 17 C -0.24 -12.02 9.96 84.04 0.84 -11.18 16 18 H 0.08 3.70 7.83 -2.91 -0.02 3.68 16 19 C -0.06 -3.34 5.50 84.87 0.47 -2.87 16 20 N -0.96 -54.99 13.06 21.65 0.28 -54.71 16 21 Si 0.96 43.56 29.55 68.60 2.03 45.58 16 22 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 23 H -0.30 -13.84 7.11 99.48 0.71 -13.13 16 24 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 25 C -0.08 -2.30 0.85 -50.99 -0.04 -2.34 16 26 C -0.12 -3.33 8.48 71.98 0.61 -2.72 16 27 C -0.13 -3.81 7.55 71.98 0.54 -3.26 16 28 C 0.12 3.54 6.04 86.73 0.52 4.06 16 29 C 0.04 0.93 4.54 86.31 0.39 1.32 16 30 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.07 0.83 6.26 -2.39 -0.01 0.81 16 33 H 0.04 0.77 8.13 -2.38 -0.02 0.75 16 34 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.04 1.07 6.48 -2.39 -0.02 1.05 16 36 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.12 1.55 6.05 -2.39 -0.01 1.53 16 38 H 0.04 0.73 8.14 -2.39 -0.02 0.72 16 39 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.13 1.81 8.14 -2.39 -0.02 1.79 16 41 H 0.07 2.21 6.80 -2.38 -0.02 2.19 16 42 H 0.07 2.35 7.33 -2.39 -0.02 2.34 16 43 H 0.38 18.27 5.46 -92.71 -0.51 17.76 16 44 H 0.25 14.04 8.31 -92.71 -0.77 13.26 16 45 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 46 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 47 H 0.06 1.52 8.13 -2.39 -0.02 1.50 16 48 H 0.05 1.44 7.44 -2.39 -0.02 1.43 16 49 H 0.05 1.77 6.76 -2.39 -0.02 1.76 16 50 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 51 H 0.07 2.04 7.82 -2.38 -0.02 2.02 16 52 H 0.07 1.98 7.85 -2.38 -0.02 1.96 16 53 H 0.10 2.66 3.86 -2.38 -0.01 2.65 16 54 H 0.03 0.92 8.14 -2.38 -0.02 0.90 16 Total: -1.00 -64.27 406.48 0.26 -64.00 By element: Atomic # 1 Polarization: 37.15 SS G_CDS: 0.37 Total: 37.53 kcal Atomic # 6 Polarization: 6.58 SS G_CDS: 6.93 Total: 13.51 kcal Atomic # 7 Polarization: -117.42 SS G_CDS: -8.04 Total: -125.46 kcal Atomic # 8 Polarization: -34.13 SS G_CDS: -1.03 Total: -35.17 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.58 kcal Total: -64.27 0.26 -64.00 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996183669.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.254 kcal (2) G-P(sol) polarization free energy of solvation -64.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds