Wall clock time and date at job start Sat Apr 11 2020 05:50:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47005 * 2 1 4 4 N 1.46905 * 109.47213 * 119.99449 * 2 1 3 5 5 C 1.47013 * 111.00073 * 298.63736 * 4 2 1 6 6 C 1.53097 * 109.25888 * 177.60422 * 5 4 2 7 7 O 1.43020 * 109.25547 * 56.84730 * 6 5 4 8 8 C 1.43010 * 113.74090 * 301.32857 * 7 6 5 9 9 H 1.09000 * 109.54401 * 298.72038 * 8 7 6 10 10 C 1.50694 * 109.50969 * 178.60447 * 8 7 6 11 11 O 1.21290 * 119.99994 * 355.22006 * 10 8 7 12 12 N 1.34779 * 120.00342 * 175.21650 * 10 8 7 13 13 C 1.46495 * 120.00002 * 179.97438 * 12 10 8 14 14 C 1.53007 * 109.47136 * 184.48853 * 13 12 10 15 15 H 1.09000 * 109.69666 * 304.91101 * 14 13 12 16 16 C 1.52758 * 109.50949 * 184.79351 * 14 13 12 17 17 C 1.53046 * 109.38271 * 185.70404 * 16 14 13 18 18 C 1.53045 * 109.53342 * 61.23967 * 17 16 14 19 19 C 1.53192 * 109.31444 * 298.63559 * 18 17 16 20 20 N 1.46923 * 108.77514 * 54.63515 * 19 18 17 21 21 C 1.36938 * 120.62802 * 126.37218 * 20 19 18 22 22 H 1.07996 * 119.99890 * 148.80299 * 21 20 19 23 23 C 1.38807 * 119.99881 * 328.79893 * 21 20 19 24 24 N 1.31620 * 120.00192 * 331.91918 * 23 21 20 25 25 Si 1.86802 * 119.99994 * 151.63884 * 23 21 20 26 26 H 1.48495 * 109.47257 * 180.27800 * 25 23 21 27 27 H 1.48497 * 109.47276 * 300.27829 * 25 23 21 28 28 H 1.48498 * 109.47181 * 60.27732 * 25 23 21 29 29 C 1.47014 * 110.99922 * 174.99943 * 4 2 1 30 30 H 1.09005 * 109.47017 * 300.00482 * 1 2 3 31 31 H 1.08997 * 109.47176 * 60.00103 * 1 2 3 32 32 H 1.08997 * 109.47181 * 180.02562 * 1 2 3 33 33 H 1.08995 * 109.47083 * 239.99445 * 2 1 3 34 34 H 1.09005 * 109.47000 * 180.02562 * 3 2 1 35 35 H 1.09002 * 109.46821 * 299.99555 * 3 2 1 36 36 H 1.08995 * 109.47653 * 59.99795 * 3 2 1 37 37 H 1.08998 * 109.50464 * 297.54045 * 5 4 2 38 38 H 1.09002 * 109.50491 * 57.62354 * 5 4 2 39 39 H 1.08995 * 109.50681 * 176.78111 * 6 5 4 40 40 H 1.08998 * 109.50475 * 296.87522 * 6 5 4 41 41 H 0.96999 * 120.00079 * 0.02562 * 12 10 8 42 42 H 1.08999 * 109.46948 * 64.49132 * 13 12 10 43 43 H 1.09001 * 109.47625 * 304.48944 * 13 12 10 44 44 H 1.08998 * 109.56766 * 65.67266 * 16 14 13 45 45 H 1.08995 * 109.39039 * 305.63017 * 16 14 13 46 46 H 1.09002 * 109.45829 * 301.22319 * 17 16 14 47 47 H 1.08995 * 109.45855 * 181.26186 * 17 16 14 48 48 H 1.08998 * 109.49125 * 178.68430 * 18 17 16 49 49 H 1.08998 * 109.49911 * 58.59091 * 18 17 16 50 50 H 1.09006 * 109.58471 * 294.85090 * 19 18 17 51 51 H 1.08999 * 109.58553 * 174.42903 * 19 18 17 52 52 H 0.96995 * 120.00298 * 353.61568 * 24 23 21 53 53 H 1.08994 * 109.50378 * 62.46101 * 29 4 2 54 54 H 1.09000 * 109.50903 * 302.32836 * 29 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 1.5752 -0.0071 2.4218 6 6 2.0558 -0.7930 3.6446 7 8 3.4782 -0.9305 3.5878 8 6 3.9459 -1.5943 2.4105 9 1 3.5401 -2.6054 2.3765 10 6 5.4514 -1.6567 2.4324 11 8 6.0684 -1.1050 3.3190 12 7 6.1123 -2.3257 1.4669 13 6 7.5758 -2.3859 1.4880 14 6 8.0749 -3.1028 0.2318 15 1 7.6041 -4.0830 0.1566 16 6 9.5911 -3.2719 0.3093 17 6 10.1047 -3.8593 -1.0073 18 6 9.7819 -2.9006 -2.1558 19 6 8.2632 -2.7304 -2.2620 20 7 7.7426 -2.3043 -0.9559 21 6 6.9670 -1.1810 -0.8467 22 1 6.2025 -1.1245 -0.0861 23 6 7.1635 -0.1150 -1.7137 24 7 8.3520 0.0960 -2.2385 25 14 5.7395 1.0156 -2.1418 26 1 6.2056 2.0635 -3.0850 27 1 4.6539 0.2258 -2.7766 28 1 5.2267 1.6563 -0.9041 29 6 3.4844 -0.8165 1.1752 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 3.1300 1.4425 -0.0005 35 1 1.6767 1.9562 -0.8901 36 1 1.6767 1.9564 0.8899 37 1 1.9942 0.9988 2.4480 38 1 0.4868 0.0517 2.4308 39 1 1.7778 -0.2587 4.5530 40 1 1.5939 -1.7803 3.6472 41 1 5.6189 -2.7668 0.7577 42 1 7.9043 -2.9316 2.3725 43 1 7.9808 -1.3742 1.5140 44 1 9.8420 -3.9441 1.1299 45 1 10.0553 -2.3006 0.4799 46 1 9.6220 -4.8195 -1.1893 47 1 11.1836 -4.0014 -0.9452 48 1 10.1685 -3.3086 -3.0897 49 1 10.2439 -1.9325 -1.9623 50 1 7.8080 -3.6797 -2.5448 51 1 8.0319 -1.9741 -3.0121 52 1 9.1109 -0.4345 -1.9497 53 1 3.9339 0.1765 1.1814 54 1 3.7897 -1.3492 0.2746 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001024615943.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:50:48 Heat of formation + Delta-G solvation = -71.465157 kcal Electronic energy + Delta-G solvation = -32783.387525 eV Core-core repulsion = 28755.044966 eV Total energy + Delta-G solvation = -4028.342558 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.58602 -40.32963 -39.37646 -37.76779 -35.92104 -34.99681 -33.38174 -32.59821 -32.01451 -31.52915 -28.54819 -28.17235 -27.30550 -26.15031 -25.28162 -23.80516 -23.15826 -22.35533 -21.49129 -20.94080 -20.55480 -19.10717 -18.11438 -17.87907 -17.22201 -17.04847 -16.55212 -16.38396 -16.24030 -15.93346 -15.73598 -15.68959 -15.27434 -15.13094 -14.95458 -14.88877 -14.62385 -14.04486 -14.02698 -13.94989 -13.75848 -13.35133 -13.14361 -12.97518 -12.91742 -12.75804 -12.66209 -12.58588 -12.38086 -12.20803 -12.00770 -11.94165 -11.88223 -11.77701 -11.60292 -11.52876 -11.30127 -11.04978 -10.81657 -10.69634 -10.32233 -9.94904 -9.46487 -8.75207 -8.05825 -5.27819 1.48930 1.49334 1.54948 1.70921 1.87397 2.64207 2.65819 3.05512 3.29786 3.46660 3.64448 3.70860 3.86538 3.90209 3.93341 3.95258 4.12104 4.14418 4.18915 4.21603 4.28866 4.35097 4.40723 4.45287 4.48502 4.53880 4.64382 4.66720 4.68763 4.72838 4.75220 4.83097 4.89670 4.90268 4.98747 5.03842 5.04929 5.09245 5.15599 5.22923 5.24186 5.31369 5.36730 5.43966 5.46727 5.65444 5.82655 5.95936 6.01476 6.10633 6.52538 6.59406 7.18841 7.20836 7.88533 8.36146 9.14029 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.012229 B = 0.004447 C = 0.003568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2289.178047 B = 6294.831716 C = 7845.916593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.070 3.930 3 C -0.194 4.194 4 N -0.519 5.519 5 C 0.007 3.993 6 C 0.058 3.942 7 O -0.388 6.388 8 C 0.092 3.908 9 H 0.117 0.883 10 C 0.512 3.488 11 O -0.578 6.578 12 N -0.689 5.689 13 C 0.145 3.855 14 C 0.160 3.840 15 H 0.060 0.940 16 C -0.129 4.129 17 C -0.099 4.099 18 C -0.131 4.131 19 C 0.148 3.852 20 N -0.605 5.605 21 C -0.340 4.340 22 H 0.082 0.918 23 C -0.074 4.074 24 N -0.947 5.947 25 Si 1.079 2.921 26 H -0.304 1.304 27 H -0.268 1.268 28 H -0.289 1.289 29 C 0.033 3.967 30 H 0.065 0.935 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.079 0.921 34 H 0.028 0.972 35 H 0.075 0.925 36 H 0.066 0.934 37 H 0.033 0.967 38 H 0.120 0.880 39 H 0.120 0.880 40 H 0.078 0.922 41 H 0.413 0.587 42 H 0.073 0.927 43 H 0.031 0.969 44 H 0.083 0.917 45 H 0.032 0.968 46 H 0.073 0.927 47 H 0.068 0.932 48 H 0.065 0.935 49 H 0.030 0.970 50 H 0.031 0.969 51 H 0.042 0.958 52 H 0.262 0.738 53 H 0.022 0.978 54 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.380 -7.566 5.361 17.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.038 4.038 3 C -0.253 4.253 4 N -0.244 5.244 5 C -0.120 4.120 6 C -0.018 4.018 7 O -0.306 6.306 8 C 0.031 3.969 9 H 0.134 0.866 10 C 0.297 3.703 11 O -0.458 6.458 12 N -0.341 5.341 13 C 0.021 3.979 14 C 0.054 3.946 15 H 0.078 0.922 16 C -0.168 4.168 17 C -0.137 4.137 18 C -0.170 4.170 19 C 0.022 3.978 20 N -0.330 5.330 21 C -0.470 4.470 22 H 0.099 0.901 23 C -0.272 4.272 24 N -0.590 5.590 25 Si 0.907 3.093 26 H -0.231 1.231 27 H -0.194 1.194 28 H -0.216 1.216 29 C -0.096 4.096 30 H 0.084 0.916 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.097 0.903 34 H 0.047 0.953 35 H 0.094 0.906 36 H 0.085 0.915 37 H 0.051 0.949 38 H 0.138 0.862 39 H 0.138 0.862 40 H 0.096 0.904 41 H 0.251 0.749 42 H 0.091 0.909 43 H 0.050 0.950 44 H 0.102 0.898 45 H 0.050 0.950 46 H 0.091 0.909 47 H 0.086 0.914 48 H 0.084 0.916 49 H 0.049 0.951 50 H 0.049 0.951 51 H 0.061 0.939 52 H 0.073 0.927 53 H 0.040 0.960 54 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -14.516 -6.310 5.206 16.662 hybrid contribution 1.312 0.163 0.176 1.334 sum -13.204 -6.147 5.382 15.527 Atomic orbital electron populations 1.21797 0.91426 1.03108 1.02766 1.21854 0.97706 0.91781 0.92483 1.22567 1.00295 0.99011 1.03390 1.62586 1.07943 1.50813 1.03025 1.23014 1.03004 0.96081 0.89929 1.23025 0.78927 1.01346 0.98505 1.88080 1.23911 1.79138 1.39497 1.21817 0.90065 0.98718 0.86300 0.86550 1.20582 0.89952 0.78237 0.81515 1.90656 1.70268 1.46755 1.38124 1.45840 1.07702 1.53395 1.27150 1.21212 0.79375 0.99668 0.97667 1.20944 0.93825 0.94087 0.85730 0.92243 1.21889 0.96381 1.00011 0.98559 1.21335 1.00592 0.98162 0.93584 1.21939 0.97772 0.98533 0.98771 1.20881 0.92026 0.96763 0.88110 1.44529 1.59614 1.27545 1.01298 1.20563 1.12239 0.93971 1.20242 0.90088 1.26575 1.01606 0.98132 1.00864 1.70833 0.99550 1.40382 1.48278 0.83371 0.74666 0.75221 0.75994 1.23108 1.19360 1.21568 1.22560 0.89865 0.99142 0.98045 0.91572 0.91024 0.91157 0.90307 0.95268 0.90584 0.91459 0.94858 0.86185 0.86192 0.90356 0.74932 0.90850 0.95022 0.89837 0.94955 0.90864 0.91375 0.91639 0.95121 0.95118 0.93931 0.92715 0.95996 0.88782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.05 9.00 71.98 0.65 -1.40 16 2 C 0.07 1.56 2.96 44.91 0.13 1.69 16 3 C -0.19 -4.85 8.49 71.98 0.61 -4.24 16 4 N -0.52 -12.36 4.72 -869.97 -4.10 -16.47 16 5 C 0.01 0.15 4.86 86.31 0.42 0.57 16 6 C 0.06 1.22 7.01 72.01 0.50 1.72 16 7 O -0.39 -12.35 10.01 -130.02 -1.30 -13.65 16 8 C 0.09 2.83 3.22 29.88 0.10 2.93 16 9 H 0.12 2.87 8.14 -2.39 -0.02 2.85 16 10 C 0.51 19.53 7.13 87.65 0.63 20.15 16 11 O -0.58 -27.34 16.51 15.90 0.26 -27.07 16 12 N -0.69 -24.46 3.24 -463.05 -1.50 -25.96 16 13 C 0.14 5.52 4.50 86.38 0.39 5.91 16 14 C 0.16 5.80 2.93 44.83 0.13 5.93 16 15 H 0.06 1.92 8.14 -2.39 -0.02 1.91 16 16 C -0.13 -4.27 5.35 30.53 0.16 -4.10 16 17 C -0.10 -3.04 5.89 30.62 0.18 -2.86 16 18 C -0.13 -4.95 5.92 30.67 0.18 -4.77 16 19 C 0.15 6.36 5.48 86.36 0.47 6.83 16 20 N -0.60 -26.79 2.80 -676.03 -1.89 -28.68 16 21 C -0.34 -17.08 7.89 84.03 0.66 -16.41 16 22 H 0.08 3.92 4.92 -2.91 -0.01 3.91 16 23 C -0.07 -4.06 4.62 84.86 0.39 -3.67 16 24 N -0.95 -56.50 12.32 21.65 0.27 -56.23 16 25 Si 1.08 50.66 30.00 68.60 2.06 52.72 16 26 H -0.30 -15.07 7.11 99.48 0.71 -14.37 16 27 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 28 H -0.29 -13.22 6.70 99.48 0.67 -12.56 16 29 C 0.03 1.00 4.55 86.32 0.39 1.40 16 30 H 0.07 0.87 6.38 -2.38 -0.02 0.86 16 31 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.08 1.91 8.12 -2.39 -0.02 1.89 16 34 H 0.03 0.93 6.17 -2.38 -0.01 0.91 16 35 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.07 1.53 6.44 -2.39 -0.02 1.51 16 37 H 0.03 0.80 6.42 -2.39 -0.02 0.79 16 38 H 0.12 1.73 6.22 -2.39 -0.01 1.72 16 39 H 0.12 1.99 8.14 -2.39 -0.02 1.97 16 40 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.41 13.26 7.67 -92.71 -0.71 12.55 16 42 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 43 H 0.03 1.50 7.73 -2.39 -0.02 1.48 16 44 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 45 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 46 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 47 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 48 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 49 H 0.03 1.36 6.53 -2.39 -0.02 1.35 16 50 H 0.03 1.21 8.14 -2.38 -0.02 1.19 16 51 H 0.04 2.17 6.01 -2.39 -0.01 2.15 16 52 H 0.26 15.65 5.64 -92.71 -0.52 15.13 16 53 H 0.02 0.82 6.56 -2.39 -0.02 0.80 16 54 H 0.09 2.90 8.00 -2.39 -0.02 2.88 16 Total: -1.00 -70.76 397.11 0.18 -70.59 By element: Atomic # 1 Polarization: 34.69 SS G_CDS: 0.38 Total: 35.07 kcal Atomic # 6 Polarization: 3.67 SS G_CDS: 6.00 Total: 9.68 kcal Atomic # 7 Polarization: -120.11 SS G_CDS: -7.23 Total: -127.34 kcal Atomic # 8 Polarization: -39.68 SS G_CDS: -1.04 Total: -40.72 kcal Atomic # 14 Polarization: 50.66 SS G_CDS: 2.06 Total: 52.72 kcal Total: -70.76 0.18 -70.59 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024615943.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.878 kcal (2) G-P(sol) polarization free energy of solvation -70.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds