Wall clock time and date at job start Sat Apr 11 2020 05:50:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46839 * 2 1 4 4 N 1.46903 * 109.46989 * 119.99555 * 2 1 3 5 5 C 1.47014 * 110.99837 * 56.05326 * 4 2 1 6 6 C 1.53094 * 109.25650 * 182.39150 * 5 4 2 7 7 O 1.43009 * 109.26020 * 303.14579 * 6 5 4 8 8 C 1.43024 * 113.73717 * 58.67392 * 7 6 5 9 9 H 1.08990 * 109.50581 * 61.30804 * 8 7 6 10 10 C 1.50703 * 109.50537 * 181.39615 * 8 7 6 11 11 O 1.21279 * 119.99897 * 4.91414 * 10 8 7 12 12 N 1.34780 * 119.99585 * 184.91173 * 10 8 7 13 13 C 1.46503 * 119.99761 * 180.02562 * 12 10 8 14 14 C 1.52993 * 109.46693 * 180.02562 * 13 12 10 15 15 H 1.09004 * 109.70593 * 301.62175 * 14 13 12 16 16 C 1.53193 * 109.58330 * 181.27594 * 14 13 12 17 17 C 1.53041 * 109.31515 * 185.58076 * 16 14 13 18 18 C 1.53042 * 109.54137 * 61.35763 * 17 16 14 19 19 C 1.53188 * 109.31284 * 298.64385 * 18 17 16 20 20 N 1.46918 * 109.59117 * 61.98733 * 14 13 12 21 21 C 1.36939 * 120.62883 * 353.66311 * 20 14 13 22 22 H 1.07997 * 119.99964 * 19.70095 * 21 20 14 23 23 C 1.38809 * 120.00022 * 199.69348 * 21 20 14 24 24 N 1.31625 * 120.00151 * 218.65894 * 23 21 20 25 25 Si 1.86799 * 120.00215 * 38.66341 * 23 21 20 26 26 H 1.48508 * 109.46985 * 85.34429 * 25 23 21 27 27 H 1.48495 * 109.47369 * 205.34323 * 25 23 21 28 28 H 1.48500 * 109.46839 * 325.34581 * 25 23 21 29 29 C 1.47020 * 110.99379 * 179.73017 * 4 2 1 30 30 H 1.08999 * 109.47005 * 60.00146 * 1 2 3 31 31 H 1.09001 * 109.46550 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47002 * 299.99925 * 1 2 3 33 33 H 1.09001 * 109.47710 * 240.00237 * 2 1 3 34 34 H 1.09007 * 109.47225 * 179.97438 * 3 2 1 35 35 H 1.08999 * 109.47203 * 299.99733 * 3 2 1 36 36 H 1.08998 * 109.47263 * 60.00235 * 3 2 1 37 37 H 1.08999 * 109.50829 * 62.44937 * 5 4 2 38 38 H 1.09002 * 109.50584 * 302.32340 * 5 4 2 39 39 H 1.09005 * 109.50410 * 183.21726 * 6 5 4 40 40 H 1.09002 * 109.54432 * 63.10519 * 6 5 4 41 41 H 0.96994 * 120.00036 * 359.97438 * 12 10 8 42 42 H 1.09001 * 109.46925 * 59.99823 * 13 12 10 43 43 H 1.09000 * 109.46591 * 299.99851 * 13 12 10 44 44 H 1.08995 * 109.50471 * 65.62117 * 16 14 13 45 45 H 1.09000 * 109.49912 * 305.52523 * 16 14 13 46 46 H 1.09003 * 109.45499 * 301.33979 * 17 16 14 47 47 H 1.08994 * 109.45293 * 181.37784 * 17 16 14 48 48 H 1.09000 * 109.49427 * 178.68664 * 18 17 16 49 49 H 1.09000 * 109.49010 * 58.59007 * 18 17 16 50 50 H 1.09006 * 109.58285 * 294.84407 * 19 18 17 51 51 H 1.08994 * 109.70257 * 174.49412 * 19 18 17 52 52 H 0.97001 * 120.00394 * 180.02562 * 24 23 21 53 53 H 1.08998 * 109.55014 * 57.70046 * 29 4 2 54 54 H 1.09003 * 109.47217 * 297.55760 * 29 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 1.4726 -2.0545 1.2817 6 6 1.9594 -2.7170 2.5732 7 8 3.3892 -2.7054 2.5995 8 6 3.9558 -1.3945 2.5218 9 1 3.6302 -0.8059 3.3793 10 6 5.4595 -1.4954 2.5223 11 8 5.9942 -2.5836 2.4932 12 7 6.2099 -0.3763 2.5552 13 6 7.6716 -0.4744 2.5551 14 6 8.2769 0.9301 2.5963 15 1 7.9298 1.5053 1.7379 16 6 9.8053 0.8318 2.5643 17 6 10.4063 2.2275 2.7458 18 6 9.9870 2.7926 4.1049 19 6 8.4606 2.9131 4.1543 20 7 7.8724 1.6046 3.8373 21 6 6.9684 1.0222 4.6852 22 1 6.7854 -0.0408 4.6320 23 6 6.2876 1.7981 5.6132 24 7 6.0567 1.3285 6.8209 25 14 5.6988 3.5088 5.1481 26 1 4.3755 3.4124 4.4808 27 1 5.5763 4.3401 6.3724 28 1 6.6763 4.1336 4.2211 29 6 3.4893 -0.7176 1.2302 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 3.1300 1.4426 0.0005 35 1 1.6766 1.9563 -0.8900 36 1 1.6766 1.9564 0.8900 37 1 1.8121 -2.6355 0.4242 38 1 0.3835 -2.0099 1.2837 39 1 1.6031 -3.7465 2.6108 40 1 1.5751 -2.1672 3.4324 41 1 5.7822 0.4939 2.5780 42 1 8.0014 -0.9862 1.6510 43 1 7.9980 -1.0361 3.4303 44 1 10.1235 0.4204 1.6064 45 1 10.1451 0.1818 3.3707 46 1 10.0466 2.8836 1.9531 47 1 11.4933 2.1635 2.6989 48 1 10.4344 3.7768 4.2433 49 1 10.3249 2.1241 4.8967 50 1 8.1284 3.6499 3.4229 51 1 8.1485 3.2221 5.1519 52 1 5.5806 1.8705 7.4693 53 1 3.8724 0.3023 1.1950 54 1 3.8611 -1.2766 0.3715 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001024615945.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:50:53 Heat of formation + Delta-G solvation = -59.967013 kcal Electronic energy + Delta-G solvation = -32279.342753 eV Core-core repulsion = 28251.498792 eV Total energy + Delta-G solvation = -4027.843961 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.51699 -40.26751 -39.31533 -37.69895 -35.82535 -34.85757 -33.33823 -32.91096 -32.49409 -31.90293 -28.69368 -28.06608 -27.38928 -26.15792 -25.00732 -24.27469 -22.79807 -22.14945 -21.39019 -21.08224 -20.74531 -18.84643 -18.12311 -17.81436 -17.49408 -17.08789 -16.79326 -16.40213 -16.36285 -16.14708 -15.45093 -15.30025 -15.27672 -15.16314 -14.95079 -14.75163 -14.63794 -14.30886 -14.15278 -13.79885 -13.55253 -13.33065 -13.25691 -13.23426 -12.91355 -12.81122 -12.75404 -12.62414 -12.59576 -12.14527 -12.11218 -11.99341 -11.76433 -11.66557 -11.56153 -11.41938 -11.23325 -10.98768 -10.84186 -10.68104 -10.36435 -9.94994 -9.46129 -8.92827 -8.10182 -5.20203 1.42839 1.52468 1.54250 1.56172 1.91918 2.56200 2.62107 2.93671 3.07557 3.43270 3.61905 3.72918 3.86682 3.89561 3.92265 4.00780 4.06661 4.14545 4.23598 4.25202 4.36791 4.37603 4.42454 4.46403 4.47495 4.54917 4.58687 4.66524 4.69298 4.76740 4.81475 4.85238 4.92299 4.93555 4.95423 5.02955 5.04103 5.11764 5.19802 5.28455 5.30146 5.35088 5.37148 5.37281 5.52738 5.68875 5.83853 5.94008 5.99505 6.00913 6.25849 6.59669 6.99721 7.23648 7.77598 8.16257 9.06044 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.011676 B = 0.003804 C = 0.003562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2397.506398 B = 7359.607584 C = 7859.482679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.075 3.925 3 C -0.149 4.149 4 N -0.541 5.541 5 C 0.019 3.981 6 C 0.053 3.947 7 O -0.386 6.386 8 C 0.084 3.916 9 H 0.082 0.918 10 C 0.516 3.484 11 O -0.578 6.578 12 N -0.688 5.688 13 C 0.137 3.863 14 C 0.164 3.836 15 H 0.061 0.939 16 C -0.125 4.125 17 C -0.102 4.102 18 C -0.136 4.136 19 C 0.139 3.861 20 N -0.609 5.609 21 C -0.247 4.247 22 H 0.065 0.935 23 C -0.017 4.017 24 N -0.933 5.933 25 Si 0.877 3.123 26 H -0.297 1.297 27 H -0.317 1.317 28 H -0.219 1.219 29 C 0.044 3.956 30 H 0.076 0.924 31 H 0.064 0.936 32 H 0.059 0.941 33 H 0.044 0.956 34 H 0.051 0.949 35 H 0.079 0.921 36 H 0.055 0.945 37 H 0.043 0.957 38 H 0.117 0.883 39 H 0.123 0.877 40 H 0.059 0.941 41 H 0.411 0.589 42 H 0.081 0.919 43 H 0.036 0.964 44 H 0.088 0.912 45 H 0.046 0.954 46 H 0.071 0.929 47 H 0.075 0.925 48 H 0.074 0.926 49 H 0.041 0.959 50 H 0.041 0.959 51 H 0.037 0.963 52 H 0.255 0.745 53 H 0.101 0.899 54 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.965 1.358 -17.394 18.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.033 4.033 3 C -0.207 4.207 4 N -0.267 5.267 5 C -0.109 4.109 6 C -0.023 4.023 7 O -0.305 6.305 8 C 0.022 3.978 9 H 0.100 0.900 10 C 0.301 3.699 11 O -0.458 6.458 12 N -0.339 5.339 13 C 0.014 3.986 14 C 0.059 3.941 15 H 0.079 0.921 16 C -0.165 4.165 17 C -0.139 4.139 18 C -0.175 4.175 19 C 0.015 3.985 20 N -0.334 5.334 21 C -0.375 4.375 22 H 0.083 0.917 23 C -0.214 4.214 24 N -0.577 5.577 25 Si 0.705 3.295 26 H -0.225 1.225 27 H -0.246 1.246 28 H -0.143 1.143 29 C -0.085 4.085 30 H 0.095 0.905 31 H 0.083 0.917 32 H 0.078 0.922 33 H 0.062 0.938 34 H 0.070 0.930 35 H 0.098 0.902 36 H 0.074 0.926 37 H 0.061 0.939 38 H 0.135 0.865 39 H 0.141 0.859 40 H 0.077 0.923 41 H 0.248 0.752 42 H 0.099 0.901 43 H 0.055 0.945 44 H 0.106 0.894 45 H 0.065 0.935 46 H 0.089 0.911 47 H 0.093 0.907 48 H 0.093 0.907 49 H 0.060 0.940 50 H 0.059 0.941 51 H 0.055 0.945 52 H 0.064 0.936 53 H 0.120 0.880 54 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -5.689 0.705 -16.873 17.820 hybrid contribution -0.665 0.726 0.365 1.050 sum -6.354 1.432 -16.508 17.746 Atomic orbital electron populations 1.21890 0.92571 1.02645 1.02894 1.21751 0.96955 0.95011 0.89554 1.21924 1.01008 0.94930 1.02804 1.62286 1.06004 1.17396 1.41055 1.22898 1.02251 0.88276 0.97474 1.23025 0.78923 1.02995 0.97359 1.88065 1.21832 1.25714 1.94867 1.21830 0.90181 0.85952 0.99806 0.90046 1.20352 0.89095 0.84252 0.76155 1.90631 1.74741 1.28771 1.51701 1.45824 1.07274 1.08562 1.72212 1.21335 0.78987 0.97744 1.00578 1.20948 0.94270 0.90545 0.88379 0.92140 1.21915 0.94483 0.98025 1.02031 1.21355 1.00416 0.95728 0.96429 1.22009 0.96390 1.00830 0.98242 1.21475 0.92620 0.86538 0.97915 1.44532 1.47087 1.20115 1.21660 1.18830 1.16111 0.92504 1.10094 0.91697 1.25495 1.01178 0.99839 0.94857 1.70293 1.43252 1.40626 1.03528 0.87138 0.80545 0.83757 0.78063 1.22538 1.24579 1.14270 1.22522 0.89648 1.01507 0.94838 0.90504 0.91717 0.92224 0.93834 0.92963 0.90210 0.92551 0.93918 0.86549 0.85893 0.92284 0.75192 0.90135 0.94526 0.89356 0.93519 0.91063 0.90668 0.90701 0.93986 0.94093 0.94454 0.93599 0.88047 0.93842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.02 8.84 71.98 0.64 -1.39 16 2 C 0.07 1.37 2.67 44.92 0.12 1.49 16 3 C -0.15 -2.70 8.97 71.98 0.65 -2.05 16 4 N -0.54 -12.66 4.59 -869.93 -4.00 -16.65 16 5 C 0.02 0.39 5.24 86.31 0.45 0.84 16 6 C 0.05 1.33 7.01 72.01 0.50 1.84 16 7 O -0.39 -13.79 10.01 -130.02 -1.30 -15.09 16 8 C 0.08 2.93 3.22 29.88 0.10 3.03 16 9 H 0.08 3.05 8.14 -2.39 -0.02 3.03 16 10 C 0.52 20.85 7.18 87.66 0.63 21.48 16 11 O -0.58 -27.64 16.51 15.93 0.26 -27.38 16 12 N -0.69 -25.62 3.68 -463.06 -1.70 -27.33 16 13 C 0.14 4.96 4.40 86.38 0.38 5.34 16 14 C 0.16 5.43 2.99 44.97 0.13 5.57 16 15 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 16 C -0.13 -3.48 5.37 30.67 0.16 -3.32 16 17 C -0.10 -2.56 5.88 30.62 0.18 -2.38 16 18 C -0.14 -4.24 6.08 30.67 0.19 -4.06 16 19 C 0.14 5.37 4.27 86.36 0.37 5.74 16 20 N -0.61 -25.32 2.82 -675.27 -1.91 -27.23 16 21 C -0.25 -12.61 7.78 84.03 0.65 -11.96 16 22 H 0.07 3.71 5.50 -2.91 -0.02 3.69 16 23 C -0.02 -0.93 4.85 84.86 0.41 -0.52 16 24 N -0.93 -56.99 13.97 21.65 0.30 -56.68 16 25 Si 0.88 41.12 26.43 68.60 1.81 42.94 16 26 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 27 H -0.32 -15.86 7.11 99.48 0.71 -15.16 16 28 H -0.22 -9.02 4.51 99.48 0.45 -8.57 16 29 C 0.04 1.19 4.58 86.32 0.40 1.58 16 30 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.06 0.81 6.30 -2.39 -0.02 0.79 16 32 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.05 1.00 6.36 -2.38 -0.02 0.98 16 35 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.12 1.80 6.11 -2.39 -0.01 1.79 16 39 H 0.12 2.44 8.14 -2.38 -0.02 2.42 16 40 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 41 H 0.41 14.86 7.43 -92.71 -0.69 14.17 16 42 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 43 H 0.04 1.60 7.40 -2.39 -0.02 1.58 16 44 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 45 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 46 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 47 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 48 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 49 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 50 H 0.04 1.48 6.82 -2.38 -0.02 1.47 16 51 H 0.04 1.65 5.07 -2.39 -0.01 1.64 16 52 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 53 H 0.10 2.60 6.07 -2.39 -0.01 2.58 16 54 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 Total: -1.00 -71.51 397.99 -0.64 -72.15 By element: Atomic # 1 Polarization: 34.09 SS G_CDS: -0.07 Total: 34.03 kcal Atomic # 6 Polarization: 15.28 SS G_CDS: 5.96 Total: 21.24 kcal Atomic # 7 Polarization: -120.58 SS G_CDS: -7.31 Total: -127.89 kcal Atomic # 8 Polarization: -41.43 SS G_CDS: -1.04 Total: -42.47 kcal Atomic # 14 Polarization: 41.12 SS G_CDS: 1.81 Total: 42.94 kcal Total: -71.51 -0.64 -72.15 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024615945.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.185 kcal (2) G-P(sol) polarization free energy of solvation -71.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds