Wall clock time and date at job start Sat Apr 11 2020 05:51:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53013 * 109.47127 * 2 1 4 4 N 1.46896 * 109.47535 * 240.00152 * 2 1 3 5 5 C 1.47017 * 111.00004 * 66.04455 * 4 2 1 6 6 C 1.53098 * 109.25671 * 177.61084 * 5 4 2 7 7 O 1.43022 * 109.26093 * 56.84630 * 6 5 4 8 8 C 1.43014 * 113.73784 * 301.33308 * 7 6 5 9 9 H 1.09004 * 109.50573 * 298.68861 * 8 7 6 10 10 C 1.50702 * 109.50627 * 178.60342 * 8 7 6 11 11 O 1.21281 * 119.99653 * 349.30033 * 10 8 7 12 12 N 1.34770 * 119.99870 * 169.29543 * 10 8 7 13 13 C 1.46930 * 120.63198 * 184.11223 * 12 10 8 14 14 C 1.53180 * 108.77733 * 126.37089 * 13 12 10 15 15 C 1.53044 * 109.31546 * 54.63681 * 14 13 12 16 16 C 1.53042 * 109.53560 * 298.63854 * 15 14 13 17 17 H 1.08998 * 109.49676 * 301.37249 * 16 15 14 18 18 N 1.46502 * 109.49628 * 181.31294 * 16 15 14 19 19 C 1.46502 * 120.00088 * 299.99632 * 18 16 15 20 20 C 1.36936 * 120.00048 * 119.99619 * 18 16 15 21 21 H 1.07999 * 120.00115 * 24.93086 * 20 18 16 22 22 C 1.38810 * 120.00267 * 204.92961 * 20 18 16 23 23 N 1.31620 * 119.99891 * 5.40174 * 22 20 18 24 24 Si 1.86794 * 120.00243 * 185.40775 * 22 20 18 25 25 H 1.48496 * 109.47029 * 359.97438 * 24 22 20 26 26 H 1.48500 * 109.47627 * 119.99873 * 24 22 20 27 27 H 1.48503 * 109.47126 * 239.99659 * 24 22 20 28 28 C 1.46929 * 120.63326 * 3.84138 * 12 10 8 29 29 C 1.47014 * 110.99799 * 302.40923 * 4 2 1 30 30 H 1.09003 * 109.46681 * 60.00517 * 1 2 3 31 31 H 1.09003 * 109.46695 * 180.02562 * 1 2 3 32 32 H 1.08992 * 109.47174 * 299.99800 * 1 2 3 33 33 H 1.09001 * 109.47217 * 120.00017 * 2 1 3 34 34 H 1.08997 * 109.46679 * 59.99623 * 3 2 1 35 35 H 1.08993 * 109.47026 * 180.02562 * 3 2 1 36 36 H 1.08997 * 109.46418 * 299.99822 * 3 2 1 37 37 H 1.09001 * 109.50351 * 297.54186 * 5 4 2 38 38 H 1.08995 * 109.51005 * 57.67558 * 5 4 2 39 39 H 1.08994 * 109.50570 * 176.77937 * 6 5 4 40 40 H 1.08997 * 109.50703 * 296.87179 * 6 5 4 41 41 H 1.09004 * 109.58606 * 246.16132 * 13 12 10 42 42 H 1.09001 * 109.58092 * 6.58172 * 13 12 10 43 43 H 1.09003 * 109.49983 * 174.58794 * 14 13 12 44 44 H 1.08998 * 109.50202 * 294.65373 * 14 13 12 45 45 H 1.09002 * 109.45648 * 58.65550 * 15 14 13 46 46 H 1.09000 * 109.46653 * 178.61261 * 15 14 13 47 47 H 1.09004 * 109.46653 * 95.02707 * 19 18 16 48 48 H 1.08992 * 109.47182 * 215.02633 * 19 18 16 49 49 H 1.09003 * 109.46909 * 335.03426 * 19 18 16 50 50 H 0.97000 * 120.00247 * 180.02562 * 23 22 20 51 51 H 1.09000 * 109.58259 * 353.40544 * 28 12 10 52 52 H 1.08991 * 109.59000 * 113.84086 * 28 12 10 53 53 H 1.08999 * 109.50655 * 302.32898 * 29 4 2 54 54 H 1.09002 * 109.50591 * 62.45929 * 29 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0197 -0.6924 -1.1994 5 6 1.6700 0.0526 -2.4176 6 6 2.2494 -0.6712 -3.6359 7 8 1.7597 -2.0147 -3.6635 8 6 2.0829 -2.7694 -2.4925 9 1 3.1660 -2.8415 -2.3935 10 6 1.4948 -4.1522 -2.6069 11 8 0.7044 -4.4037 -3.4917 12 7 1.8474 -5.1094 -1.7260 13 6 1.3530 -6.4847 -1.8772 14 6 2.5494 -7.4413 -1.8789 15 6 3.3852 -7.2089 -0.6180 16 6 3.9147 -5.7730 -0.6125 17 1 4.5153 -5.6034 -1.5061 18 7 4.7403 -5.5610 0.5790 19 6 4.1581 -5.7280 1.9129 20 6 6.0563 -5.2065 0.4459 21 1 6.3917 -4.7011 -0.4476 22 6 6.9593 -5.4969 1.4594 23 7 6.5752 -6.2056 2.4999 24 14 8.7194 -4.8818 1.3467 25 1 8.8961 -4.1150 0.0874 26 1 9.0120 -4.0027 2.5073 27 1 9.6498 -6.0393 1.3556 28 6 2.7382 -4.7987 -0.5996 29 6 1.5019 -2.0669 -1.2626 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.6766 1.9564 0.8899 35 1 3.1300 1.4426 -0.0005 36 1 1.6767 1.9563 -0.8900 37 1 0.5855 0.1102 -2.5102 38 1 2.0850 1.0588 -2.3607 39 1 1.9444 -0.1540 -4.5456 40 1 3.3373 -0.6810 -3.5701 41 1 0.6913 -6.7286 -1.0460 42 1 0.8104 -6.5765 -2.8181 43 1 2.1920 -8.4710 -1.8937 44 1 3.1621 -7.2562 -2.7612 45 1 2.7649 -7.3706 0.2636 46 1 4.2236 -7.9053 -0.6045 47 1 4.3584 -6.7372 2.2729 48 1 4.6014 -5.0038 2.5962 49 1 3.0811 -5.5676 1.8619 50 1 7.2060 -6.4082 3.2083 51 1 3.1093 -3.7786 -0.6979 52 1 2.1918 -4.9024 0.3377 53 1 1.7941 -2.6077 -0.3625 54 1 0.4146 -2.0431 -1.3368 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027547586.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:51:04 Heat of formation + Delta-G solvation = -56.363667 kcal Electronic energy + Delta-G solvation = -32529.448313 eV Core-core repulsion = 28501.760605 eV Total energy + Delta-G solvation = -4027.687709 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.87468 -40.43874 -38.96399 -37.75846 -36.60764 -34.29607 -33.45395 -32.67439 -32.13858 -30.34180 -28.45048 -28.02830 -27.99794 -26.41276 -25.23870 -25.13025 -23.44313 -22.55551 -21.18831 -20.60354 -19.95013 -18.78124 -18.46120 -17.85408 -17.28423 -17.02924 -16.63082 -16.57800 -16.06406 -15.72500 -15.66588 -15.49488 -15.37364 -15.17170 -14.96770 -14.83218 -14.43470 -14.02948 -13.94342 -13.84736 -13.73877 -13.60643 -13.09285 -12.95588 -12.82898 -12.77536 -12.74374 -12.53815 -12.37145 -12.24329 -12.09918 -12.05851 -11.92532 -11.83879 -11.75064 -11.62920 -11.58470 -11.43225 -10.82050 -10.75337 -10.59781 -9.77960 -9.38786 -8.69577 -7.78612 -5.29227 1.35717 1.47718 1.50206 1.58833 1.66265 2.51380 2.66564 2.81204 3.35562 3.41665 3.62220 3.73196 3.81517 3.90940 3.92621 3.93197 4.02304 4.10655 4.16143 4.20436 4.24060 4.30532 4.37402 4.39563 4.46550 4.53877 4.62829 4.64923 4.69908 4.73146 4.78316 4.84022 4.88159 4.88697 4.94662 4.97195 4.99824 5.05968 5.10857 5.26079 5.33324 5.35613 5.44625 5.46654 5.50109 5.69975 5.82964 5.86304 5.97648 6.00828 6.24965 6.39312 7.00386 7.20600 7.90172 8.33249 9.23499 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.009229 B = 0.004193 C = 0.003342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3033.140717 B = 6676.801616 C = 8377.130701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.072 3.928 3 C -0.142 4.142 4 N -0.535 5.535 5 C 0.013 3.987 6 C 0.055 3.945 7 O -0.383 6.383 8 C 0.082 3.918 9 H 0.090 0.910 10 C 0.524 3.476 11 O -0.564 6.564 12 N -0.597 5.597 13 C 0.113 3.887 14 C -0.120 4.120 15 C -0.123 4.123 16 C 0.165 3.835 17 H 0.051 0.949 18 N -0.606 5.606 19 C 0.181 3.819 20 C -0.257 4.257 21 H 0.068 0.932 22 C -0.046 4.046 23 N -0.936 5.936 24 Si 0.962 3.038 25 H -0.268 1.268 26 H -0.291 1.291 27 H -0.295 1.295 28 C 0.100 3.900 29 C 0.035 3.965 30 H 0.058 0.942 31 H 0.046 0.954 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.073 0.927 35 H 0.058 0.942 36 H 0.066 0.934 37 H 0.045 0.955 38 H 0.114 0.886 39 H 0.124 0.876 40 H 0.063 0.937 41 H 0.085 0.915 42 H 0.086 0.914 43 H 0.096 0.904 44 H 0.057 0.943 45 H 0.060 0.940 46 H 0.043 0.957 47 H 0.003 0.997 48 H 0.017 0.983 49 H 0.031 0.969 50 H 0.247 0.753 51 H 0.088 0.912 52 H 0.078 0.922 53 H 0.096 0.904 54 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.613 11.537 -6.389 18.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.036 4.036 3 C -0.199 4.199 4 N -0.260 5.260 5 C -0.115 4.115 6 C -0.021 4.021 7 O -0.302 6.302 8 C 0.021 3.979 9 H 0.107 0.893 10 C 0.311 3.689 11 O -0.443 6.443 12 N -0.330 5.330 13 C -0.009 4.009 14 C -0.158 4.158 15 C -0.162 4.162 16 C 0.057 3.943 17 H 0.070 0.930 18 N -0.328 5.328 19 C 0.037 3.963 20 C -0.387 4.387 21 H 0.086 0.914 22 C -0.241 4.241 23 N -0.583 5.583 24 Si 0.791 3.209 25 H -0.193 1.193 26 H -0.218 1.218 27 H -0.222 1.222 28 C -0.024 4.024 29 C -0.094 4.094 30 H 0.077 0.923 31 H 0.065 0.935 32 H 0.095 0.905 33 H 0.098 0.902 34 H 0.092 0.908 35 H 0.078 0.922 36 H 0.085 0.915 37 H 0.063 0.937 38 H 0.132 0.868 39 H 0.142 0.858 40 H 0.081 0.919 41 H 0.103 0.897 42 H 0.105 0.895 43 H 0.115 0.885 44 H 0.075 0.925 45 H 0.079 0.921 46 H 0.062 0.938 47 H 0.021 0.979 48 H 0.036 0.964 49 H 0.049 0.951 50 H 0.056 0.944 51 H 0.106 0.894 52 H 0.096 0.904 53 H 0.114 0.886 54 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -12.519 11.282 -6.833 18.185 hybrid contribution 0.610 -0.008 0.521 0.802 sum -11.909 11.274 -6.312 17.571 Atomic orbital electron populations 1.22434 0.96838 1.01766 1.03095 1.21821 0.93293 0.96218 0.92222 1.21879 1.01680 0.93523 1.02854 1.62491 1.59060 1.01107 1.03360 1.22950 0.99512 0.99460 0.89584 1.23021 0.99049 0.80756 0.99272 1.88050 1.78707 1.25294 1.38125 1.21854 0.99818 0.89115 0.87105 0.89280 1.20319 0.81133 0.86483 0.80939 1.90649 1.35745 1.82398 1.35512 1.48113 1.47942 1.09842 1.27116 1.21741 0.96455 0.79247 1.03419 1.21846 0.96270 1.00145 0.97563 1.21952 0.98850 0.97604 0.97840 1.20634 0.90802 0.93224 0.89670 0.93041 1.44032 1.07379 1.80578 1.00853 1.20514 0.92288 0.98167 0.85359 1.19516 0.85186 1.30300 1.03742 0.91440 1.25736 1.01116 0.99243 0.97989 1.70214 1.34632 1.42630 1.10850 0.85276 0.80879 0.77188 0.77565 1.19263 1.21832 1.22221 1.22378 0.91079 1.00590 0.88319 1.22646 0.98000 0.91208 0.97506 0.92257 0.93468 0.90516 0.90180 0.90792 0.92248 0.91546 0.93712 0.86840 0.85842 0.91868 0.89699 0.89528 0.88521 0.92454 0.92103 0.93792 0.97898 0.96413 0.95103 0.94397 0.89392 0.90412 0.88630 0.93585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.02 8.48 71.98 0.61 -2.41 16 2 C 0.07 1.32 3.08 44.92 0.14 1.46 16 3 C -0.14 -2.05 8.77 71.99 0.63 -1.42 16 4 N -0.54 -11.64 4.77 -869.96 -4.15 -15.79 16 5 C 0.01 0.23 4.85 86.31 0.42 0.65 16 6 C 0.06 1.15 7.01 72.01 0.50 1.65 16 7 O -0.38 -11.37 10.03 -130.19 -1.31 -12.68 16 8 C 0.08 2.39 2.36 29.88 0.07 2.46 16 9 H 0.09 2.65 7.29 -2.38 -0.02 2.64 16 10 C 0.52 17.03 7.06 87.66 0.62 17.65 16 11 O -0.56 -21.85 15.97 15.75 0.25 -21.60 16 12 N -0.60 -17.55 2.98 -819.75 -2.44 -19.99 16 13 C 0.11 2.94 6.42 86.36 0.55 3.50 16 14 C -0.12 -3.13 6.08 30.67 0.19 -2.95 16 15 C -0.12 -4.08 5.15 30.62 0.16 -3.92 16 16 C 0.16 6.14 2.72 44.93 0.12 6.26 16 17 H 0.05 2.06 7.88 -2.39 -0.02 2.04 16 18 N -0.61 -28.05 2.82 -703.14 -1.98 -30.03 16 19 C 0.18 8.31 8.01 127.77 1.02 9.34 16 20 C -0.26 -13.44 9.59 84.03 0.81 -12.63 16 21 H 0.07 3.47 7.81 -2.91 -0.02 3.45 16 22 C -0.05 -2.47 5.24 84.86 0.44 -2.02 16 23 N -0.94 -53.39 10.44 21.65 0.23 -53.16 16 24 Si 0.96 43.96 29.56 68.60 2.03 45.99 16 25 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 26 H -0.29 -13.30 7.11 99.48 0.71 -12.60 16 27 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 28 C 0.10 3.09 4.61 86.22 0.40 3.49 16 29 C 0.04 0.88 4.03 86.31 0.35 1.22 16 30 H 0.06 0.95 6.61 -2.39 -0.02 0.93 16 31 H 0.05 0.89 6.42 -2.39 -0.02 0.87 16 32 H 0.08 1.05 8.14 -2.39 -0.02 1.04 16 33 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.07 0.82 6.27 -2.39 -0.01 0.80 16 37 H 0.04 0.85 6.59 -2.39 -0.02 0.83 16 38 H 0.11 1.59 6.08 -2.39 -0.01 1.58 16 39 H 0.12 1.94 8.14 -2.39 -0.02 1.92 16 40 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 41 H 0.08 1.93 8.14 -2.38 -0.02 1.91 16 42 H 0.09 2.35 7.03 -2.39 -0.02 2.33 16 43 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 44 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 45 H 0.06 1.98 7.72 -2.39 -0.02 1.97 16 46 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 47 H 0.00 0.14 7.35 -2.38 -0.02 0.12 16 48 H 0.02 0.88 7.25 -2.39 -0.02 0.86 16 49 H 0.03 1.17 6.35 -2.39 -0.02 1.15 16 50 H 0.25 13.76 8.31 -92.71 -0.77 12.99 16 51 H 0.09 2.73 4.60 -2.39 -0.01 2.72 16 52 H 0.08 2.31 6.48 -2.39 -0.02 2.29 16 53 H 0.10 2.40 5.82 -2.39 -0.01 2.39 16 54 H 0.05 1.19 6.41 -2.39 -0.02 1.18 16 Total: -1.00 -66.01 395.03 0.54 -65.47 By element: Atomic # 1 Polarization: 18.59 SS G_CDS: 0.88 Total: 19.47 kcal Atomic # 6 Polarization: 15.30 SS G_CDS: 7.03 Total: 22.33 kcal Atomic # 7 Polarization: -110.63 SS G_CDS: -8.35 Total: -118.97 kcal Atomic # 8 Polarization: -33.23 SS G_CDS: -1.05 Total: -34.28 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Total: -66.01 0.54 -65.47 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027547586.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.102 kcal (2) G-P(sol) polarization free energy of solvation -66.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds