Wall clock time and date at job start Sat Apr 11 2020 05:50:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47238 * 2 1 4 4 N 1.46911 * 109.46833 * 119.99815 * 2 1 3 5 5 C 1.46848 * 110.99855 * 304.70408 * 4 2 1 6 6 C 1.53035 * 109.51854 * 185.84013 * 5 4 2 7 7 C 1.53113 * 109.28130 * 300.82134 * 6 5 4 8 8 C 1.53113 * 109.16052 * 57.65602 * 7 6 5 9 9 C 1.46839 * 110.99878 * 68.91412 * 4 2 1 10 10 H 1.08996 * 109.46597 * 294.16645 * 9 4 2 11 11 C 1.50705 * 109.46574 * 54.14301 * 9 4 2 12 12 O 1.21288 * 119.99662 * 27.47954 * 11 9 4 13 13 N 1.34767 * 120.00204 * 207.47835 * 11 9 4 14 14 C 1.46496 * 120.00298 * 0.02562 * 13 11 9 15 15 C 1.46500 * 120.00004 * 180.02562 * 13 11 9 16 16 H 1.08996 * 110.88851 * 3.88042 * 15 13 11 17 17 C 1.55129 * 110.94199 * 127.95818 * 15 13 11 18 18 N 1.47420 * 104.72441 * 155.28869 * 17 15 13 19 19 C 1.36942 * 125.64836 * 155.81717 * 18 17 15 20 20 H 1.07995 * 119.99870 * 5.12360 * 19 18 17 21 21 C 1.38813 * 119.99982 * 185.12114 * 19 18 17 22 22 N 1.31624 * 119.99845 * 6.12800 * 21 19 18 23 23 Si 1.86801 * 119.99792 * 186.13104 * 21 19 18 24 24 H 1.48497 * 109.47049 * 265.00329 * 23 21 19 25 25 H 1.48492 * 109.47241 * 25.00738 * 23 21 19 26 26 H 1.48501 * 109.46752 * 145.00566 * 23 21 19 27 27 C 1.47018 * 108.70577 * 335.55312 * 18 17 15 28 28 C 1.54329 * 107.27038 * 1.28530 * 27 18 17 29 29 H 1.08995 * 110.72315 * 263.83115 * 28 27 18 30 30 O 1.42896 * 110.72052 * 140.55199 * 28 27 18 31 31 H 1.09001 * 109.47303 * 59.99953 * 1 2 3 32 32 H 1.08997 * 109.47091 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47415 * 299.99992 * 1 2 3 34 34 H 1.08999 * 109.47163 * 239.99522 * 2 1 3 35 35 H 1.08997 * 109.46850 * 183.73462 * 3 2 1 36 36 H 1.08998 * 109.47070 * 303.73461 * 3 2 1 37 37 H 1.08998 * 109.46918 * 63.73209 * 3 2 1 38 38 H 1.09000 * 109.46178 * 305.85328 * 5 4 2 39 39 H 1.08998 * 109.46340 * 65.83439 * 5 4 2 40 40 H 1.09007 * 109.50615 * 60.76446 * 6 5 4 41 41 H 1.09004 * 109.50234 * 180.83752 * 6 5 4 42 42 H 1.09001 * 109.52503 * 177.56681 * 7 6 5 43 43 H 1.09006 * 109.52267 * 297.74734 * 7 6 5 44 44 H 1.09007 * 109.50231 * 182.40854 * 8 7 6 45 45 H 1.08994 * 109.50550 * 62.29185 * 8 7 6 46 46 H 1.09005 * 109.47189 * 270.00165 * 14 13 11 47 47 H 1.09001 * 109.47147 * 29.99733 * 14 13 11 48 48 H 1.08997 * 109.47652 * 149.99518 * 14 13 11 49 49 H 1.09001 * 110.49492 * 36.44879 * 17 15 13 50 50 H 1.09001 * 110.34248 * 274.05810 * 17 15 13 51 51 H 0.96999 * 119.99585 * 179.97438 * 22 21 19 52 52 H 1.08997 * 109.88487 * 120.70216 * 27 18 17 53 53 H 1.08999 * 109.88740 * 241.87342 * 27 18 17 54 54 H 0.96698 * 113.99981 * 61.45860 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6925 1.1996 5 6 1.4591 -0.0945 2.4180 6 6 2.1001 -0.7427 3.6472 7 6 1.8284 -2.2493 3.6240 8 6 2.3792 -2.8393 2.3229 9 6 1.7300 -2.1305 1.1321 10 1 0.6515 -2.2855 1.1611 11 6 2.2838 -2.6947 -0.1509 12 8 3.2424 -2.1720 -0.6792 13 7 1.7140 -3.7798 -0.7113 14 6 0.5559 -4.4107 -0.0736 15 6 2.2528 -4.3285 -1.9582 16 1 3.1497 -3.7900 -2.2643 17 6 2.5311 -5.8485 -1.8206 18 7 2.4660 -6.3676 -3.1988 19 6 3.0772 -7.5059 -3.6526 20 1 3.5992 -8.1508 -2.9612 21 6 3.0259 -7.8309 -5.0011 22 7 2.4958 -6.9876 -5.8616 23 14 3.7091 -9.4650 -5.5947 24 1 5.1081 -9.2782 -6.0564 25 1 3.6823 -10.4467 -4.4809 26 1 2.8800 -9.9691 -6.7189 27 6 1.6310 -5.4643 -4.0040 28 6 1.1829 -4.3109 -3.0818 29 1 0.1915 -4.5066 -2.6733 30 8 1.2059 -3.0655 -3.7822 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3634 0.5138 0.8900 34 1 1.8933 -0.5139 -0.8899 35 1 3.1279 1.4431 -0.0669 36 1 1.6230 1.9753 -0.8546 37 1 1.7323 1.9366 0.9215 38 1 1.6630 0.9762 2.4241 39 1 0.3818 -0.2592 2.4410 40 1 3.1758 -0.5666 3.6322 41 1 1.6731 -0.3091 4.5516 42 1 2.3198 -2.7213 4.4749 43 1 0.7542 -2.4266 3.6784 44 1 2.1509 -3.9044 2.2811 45 1 3.4591 -2.6964 2.2870 46 1 0.8971 -5.1757 0.6240 47 1 -0.0173 -3.6568 0.4660 48 1 -0.0739 -4.8691 -0.8360 49 1 1.7692 -6.3213 -1.2008 50 1 3.5221 -6.0156 -1.3986 51 1 2.4603 -7.2146 -6.8039 52 1 2.2106 -5.0684 -4.8378 53 1 0.7585 -6.0004 -4.3776 54 1 0.6098 -3.0310 -4.5428 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047553505.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:50:15 Heat of formation + Delta-G solvation = -66.319765 kcal Electronic energy + Delta-G solvation = -32527.580356 eV Core-core repulsion = 28499.460918 eV Total energy + Delta-G solvation = -4028.119437 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.86662 -40.22579 -38.85404 -36.75753 -36.44973 -35.93789 -33.91359 -32.32980 -31.18293 -30.31254 -29.03917 -28.14172 -27.84242 -26.55343 -25.40246 -24.75110 -22.36196 -22.05781 -21.54613 -20.60156 -19.71666 -19.01998 -18.71387 -17.86598 -17.56371 -17.02393 -16.53947 -16.43474 -15.98323 -15.68242 -15.48918 -15.22820 -14.89664 -14.82950 -14.60081 -14.51639 -14.24394 -14.15263 -14.07698 -13.78278 -13.68923 -13.38451 -13.25374 -13.17384 -12.96737 -12.85027 -12.75446 -12.67629 -12.63948 -12.35919 -12.08362 -12.05506 -11.95596 -11.89031 -11.67331 -11.56262 -11.47317 -11.14972 -10.98639 -10.81151 -10.52691 -9.67144 -9.14675 -8.96975 -7.88310 -5.28908 1.45458 1.47278 1.56578 1.58418 1.81166 2.46884 2.87790 3.10578 3.31193 3.45434 3.56721 3.80709 3.83747 3.87908 3.92860 4.02596 4.06049 4.08022 4.17946 4.27283 4.31245 4.34751 4.37999 4.43816 4.45187 4.55968 4.65136 4.67901 4.75162 4.77010 4.80316 4.82820 4.86808 4.94516 4.99816 5.04305 5.06041 5.14166 5.21064 5.26089 5.26892 5.30168 5.38566 5.43977 5.49737 5.52359 5.64311 6.03630 6.12442 6.23369 6.44226 6.80687 7.01379 7.20560 7.67233 8.30154 9.19630 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.020234 B = 0.002965 C = 0.002746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.510948 B = 9442.385333 C =10195.334232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.066 3.934 3 C -0.133 4.133 4 N -0.529 5.529 5 C 0.050 3.950 6 C -0.118 4.118 7 C -0.111 4.111 8 C -0.106 4.106 9 C 0.082 3.918 10 H 0.084 0.916 11 C 0.513 3.487 12 O -0.570 6.570 13 N -0.599 5.599 14 C 0.064 3.936 15 C 0.147 3.853 16 H 0.070 0.930 17 C 0.136 3.864 18 N -0.620 5.620 19 C -0.247 4.247 20 H 0.086 0.914 21 C -0.063 4.063 22 N -0.949 5.949 23 Si 0.982 3.018 24 H -0.290 1.290 25 H -0.265 1.265 26 H -0.291 1.291 27 C 0.158 3.842 28 C 0.086 3.914 29 H 0.085 0.915 30 O -0.571 6.571 31 H 0.062 0.938 32 H 0.048 0.952 33 H 0.078 0.922 34 H 0.051 0.949 35 H 0.043 0.957 36 H 0.063 0.937 37 H 0.074 0.926 38 H 0.086 0.914 39 H 0.051 0.949 40 H 0.056 0.944 41 H 0.091 0.909 42 H 0.080 0.920 43 H 0.079 0.921 44 H 0.082 0.918 45 H 0.052 0.948 46 H 0.079 0.921 47 H 0.097 0.903 48 H 0.077 0.923 49 H 0.056 0.944 50 H 0.039 0.961 51 H 0.248 0.752 52 H 0.032 0.968 53 H 0.014 0.986 54 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.286 13.049 20.981 26.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.042 4.042 3 C -0.190 4.190 4 N -0.255 5.255 5 C -0.076 4.076 6 C -0.155 4.155 7 C -0.149 4.149 8 C -0.145 4.145 9 C -0.030 4.030 10 H 0.101 0.899 11 C 0.302 3.698 12 O -0.448 6.448 13 N -0.332 5.332 14 C -0.077 4.077 15 C 0.042 3.958 16 H 0.089 0.911 17 C 0.009 3.991 18 N -0.347 5.347 19 C -0.376 4.376 20 H 0.104 0.896 21 C -0.256 4.256 22 N -0.597 5.597 23 Si 0.809 3.191 24 H -0.217 1.217 25 H -0.189 1.189 26 H -0.218 1.218 27 C 0.032 3.968 28 C 0.025 3.975 29 H 0.103 0.897 30 O -0.378 6.378 31 H 0.081 0.919 32 H 0.067 0.933 33 H 0.097 0.903 34 H 0.070 0.930 35 H 0.062 0.938 36 H 0.082 0.918 37 H 0.093 0.907 38 H 0.104 0.896 39 H 0.069 0.931 40 H 0.075 0.925 41 H 0.109 0.891 42 H 0.099 0.901 43 H 0.097 0.903 44 H 0.101 0.899 45 H 0.071 0.929 46 H 0.098 0.902 47 H 0.115 0.885 48 H 0.095 0.905 49 H 0.074 0.926 50 H 0.058 0.942 51 H 0.058 0.942 52 H 0.050 0.950 53 H 0.032 0.968 54 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -8.814 13.425 21.017 26.451 hybrid contribution -0.455 -1.210 -1.902 2.300 sum -9.269 12.215 19.115 24.505 Atomic orbital electron populations 1.22394 0.95998 1.01807 1.03296 1.21754 0.93616 0.96126 0.92748 1.21739 1.00767 0.94013 1.02500 1.61846 1.60311 1.00372 1.02930 1.22302 0.97312 0.99650 0.88351 1.21637 1.01155 0.95479 0.97251 1.21555 1.01852 0.95601 0.95845 1.21563 1.00194 0.99568 0.93126 1.21644 0.99436 0.90042 0.91858 0.89877 1.21189 0.82926 0.79322 0.86355 1.90680 1.29116 1.60223 1.64736 1.47808 1.32378 1.29410 1.23592 1.22190 0.87186 0.99467 0.98888 1.21893 0.96144 0.94340 0.83466 0.91144 1.21926 0.99484 0.90264 0.87384 1.44509 1.57719 1.26470 1.06031 1.19474 1.27851 0.97759 0.92482 0.89591 1.25711 1.01790 1.02236 0.95892 1.70156 1.51303 1.36471 1.01753 0.85020 0.77133 0.79097 0.77809 1.21680 1.18908 1.21773 1.21661 0.93243 0.89064 0.92842 1.23298 0.98185 0.83823 0.92163 0.89729 1.86482 1.69252 1.34554 1.47550 0.91929 0.93285 0.90310 0.93023 0.93817 0.91811 0.90705 0.89568 0.93138 0.92517 0.89088 0.90127 0.90252 0.89921 0.92920 0.90244 0.88494 0.90482 0.92638 0.94245 0.94231 0.94995 0.96776 0.75995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.26 8.46 71.98 0.61 -2.65 16 2 C 0.07 1.61 2.55 44.91 0.11 1.73 16 3 C -0.13 -2.80 9.19 71.98 0.66 -2.14 16 4 N -0.53 -12.14 4.21 -850.39 -3.58 -15.72 16 5 C 0.05 0.77 4.57 86.32 0.39 1.16 16 6 C -0.12 -1.51 6.09 30.64 0.19 -1.33 16 7 C -0.11 -1.36 6.00 30.67 0.18 -1.18 16 8 C -0.11 -2.01 5.36 30.65 0.16 -1.84 16 9 C 0.08 1.84 1.26 44.20 0.06 1.89 16 10 H 0.08 1.49 4.65 -2.39 -0.01 1.48 16 11 C 0.51 16.64 5.71 87.66 0.50 17.14 16 12 O -0.57 -24.52 14.54 -3.05 -0.04 -24.57 16 13 N -0.60 -18.29 2.91 -814.40 -2.37 -20.66 16 14 C 0.06 1.28 8.82 127.77 1.13 2.41 16 15 C 0.15 5.84 3.19 46.46 0.15 5.99 16 16 H 0.07 3.45 7.02 -2.39 -0.02 3.43 16 17 C 0.14 5.66 6.79 86.93 0.59 6.25 16 18 N -0.62 -32.15 3.39 -691.56 -2.35 -34.50 16 19 C -0.25 -13.89 10.27 84.03 0.86 -13.03 16 20 H 0.09 4.59 7.84 -2.91 -0.02 4.57 16 21 C -0.06 -3.58 5.46 84.86 0.46 -3.12 16 22 N -0.95 -56.99 10.43 21.65 0.23 -56.76 16 23 Si 0.98 45.66 29.56 68.60 2.03 47.69 16 24 H -0.29 -13.46 7.11 99.48 0.71 -12.76 16 25 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 26 H -0.29 -13.51 7.11 99.48 0.71 -12.81 16 27 C 0.16 7.83 5.20 86.73 0.45 8.28 16 28 C 0.09 3.33 3.89 31.79 0.12 3.45 16 29 H 0.09 2.78 6.40 -2.39 -0.02 2.77 16 30 O -0.57 -21.91 13.39 -148.98 -2.00 -23.91 16 31 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.05 0.92 6.77 -2.39 -0.02 0.90 16 33 H 0.08 1.11 6.47 -2.39 -0.02 1.09 16 34 H 0.05 1.77 5.71 -2.39 -0.01 1.76 16 35 H 0.04 1.08 8.14 -2.39 -0.02 1.07 16 36 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.07 1.21 6.23 -2.39 -0.01 1.20 16 38 H 0.09 1.21 6.10 -2.39 -0.01 1.20 16 39 H 0.05 0.63 6.58 -2.39 -0.02 0.62 16 40 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 41 H 0.09 0.76 8.14 -2.38 -0.02 0.74 16 42 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 43 H 0.08 0.73 8.14 -2.38 -0.02 0.71 16 44 H 0.08 1.37 8.09 -2.38 -0.02 1.35 16 45 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 46 H 0.08 1.32 8.10 -2.38 -0.02 1.30 16 47 H 0.10 1.37 5.81 -2.39 -0.01 1.36 16 48 H 0.08 1.56 6.41 -2.39 -0.02 1.55 16 49 H 0.06 2.02 7.01 -2.39 -0.02 2.00 16 50 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 51 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 52 H 0.03 1.85 6.84 -2.39 -0.02 1.83 16 53 H 0.01 0.74 7.93 -2.39 -0.02 0.72 16 54 H 0.39 11.60 9.11 -74.06 -0.67 10.92 16 Total: -1.00 -77.30 397.20 -1.22 -78.52 By element: Atomic # 1 Polarization: 26.68 SS G_CDS: 0.22 Total: 26.90 kcal Atomic # 6 Polarization: 16.37 SS G_CDS: 6.64 Total: 23.01 kcal Atomic # 7 Polarization: -119.57 SS G_CDS: -8.07 Total: -127.64 kcal Atomic # 8 Polarization: -46.44 SS G_CDS: -2.04 Total: -48.48 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.69 kcal Total: -77.30 -1.22 -78.52 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047553505.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.199 kcal (2) G-P(sol) polarization free energy of solvation -77.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds