Wall clock time and date at job start Sat Apr 11 2020 05:50:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47049 * 2 1 4 4 N 1.46904 * 109.47114 * 179.97438 * 3 2 1 5 5 C 1.46838 * 110.99841 * 45.78959 * 4 3 2 6 6 C 1.53040 * 109.52396 * 185.83627 * 5 4 3 7 7 C 1.53117 * 109.27910 * 300.82586 * 6 5 4 8 8 C 1.53112 * 109.16210 * 57.65014 * 7 6 5 9 9 H 1.08995 * 109.53509 * 62.31041 * 8 7 6 10 10 C 1.50708 * 109.50267 * 182.40741 * 8 7 6 11 11 O 1.21280 * 119.99914 * 119.80445 * 10 8 7 12 12 N 1.34778 * 119.99463 * 299.80144 * 10 8 7 13 13 C 1.46507 * 119.99501 * 179.97438 * 12 10 8 14 14 C 1.53001 * 109.46887 * 185.51266 * 13 12 10 15 15 H 1.09003 * 109.70591 * 304.90791 * 14 13 12 16 16 C 1.52878 * 109.61714 * 184.61123 * 14 13 12 17 17 O 1.42953 * 109.29937 * 188.11362 * 16 14 13 18 18 C 1.42965 * 114.16742 * 62.44673 * 17 16 14 19 19 C 1.53295 * 109.22231 * 297.42404 * 18 17 16 20 20 N 1.47148 * 109.68141 * 65.44683 * 14 13 12 21 21 C 1.36934 * 120.98233 * 350.28089 * 20 14 13 22 22 H 1.07993 * 120.00457 * 327.67583 * 21 20 14 23 23 C 1.38817 * 119.99757 * 147.67151 * 21 20 14 24 24 N 1.31618 * 120.00217 * 334.84194 * 23 21 20 25 25 Si 1.86800 * 119.99882 * 154.83677 * 23 21 20 26 26 H 1.48496 * 109.47057 * 90.00308 * 25 23 21 27 27 H 1.48508 * 109.47159 * 330.00487 * 25 23 21 28 28 H 1.48494 * 109.47278 * 210.00416 * 25 23 21 29 29 C 1.46842 * 110.99712 * 169.99966 * 4 3 2 30 30 H 1.08999 * 109.47297 * 59.99806 * 1 2 3 31 31 H 1.08994 * 109.47017 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.46990 * 299.99993 * 1 2 3 33 33 H 1.08996 * 109.47748 * 240.00103 * 2 1 3 34 34 H 1.08996 * 109.47315 * 119.99660 * 2 1 3 35 35 H 1.09005 * 109.47219 * 60.00147 * 3 2 1 36 36 H 1.08999 * 109.47229 * 300.00235 * 3 2 1 37 37 H 1.09004 * 109.46865 * 305.85764 * 5 4 3 38 38 H 1.09000 * 109.46731 * 65.82152 * 5 4 3 39 39 H 1.09001 * 109.49966 * 60.76354 * 6 5 4 40 40 H 1.09002 * 109.50325 * 180.83599 * 6 5 4 41 41 H 1.09002 * 109.51805 * 297.74354 * 7 6 5 42 42 H 1.08996 * 109.52150 * 177.56048 * 7 6 5 43 43 H 0.96996 * 120.00674 * 0.02562 * 12 10 8 44 44 H 1.09006 * 109.46803 * 65.51308 * 13 12 10 45 45 H 1.08996 * 109.47387 * 305.51291 * 13 12 10 46 46 H 1.09003 * 109.58443 * 68.09740 * 16 14 13 47 47 H 1.09002 * 109.40782 * 308.02721 * 16 14 13 48 48 H 1.09000 * 109.51336 * 177.49567 * 18 17 16 49 49 H 1.09000 * 109.51100 * 57.34260 * 18 17 16 50 50 H 1.09003 * 109.68058 * 292.57059 * 19 18 17 51 51 H 1.09000 * 109.68133 * 172.02855 * 19 18 17 52 52 H 0.97001 * 119.99937 * 354.29674 * 24 23 21 53 53 H 1.09001 * 109.46669 * 54.14840 * 29 4 3 54 54 H 1.09005 * 109.46405 * 294.17502 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4426 0.0006 5 6 4.0356 0.4865 -0.9816 6 6 5.5585 0.4070 -0.8524 7 6 6.1592 1.7951 -1.0905 8 6 5.5581 2.7820 -0.0859 9 1 5.8210 2.4765 0.9269 10 6 6.0999 4.1630 -0.3515 11 8 5.3428 5.0673 -0.6342 12 7 7.4256 4.3930 -0.2747 13 6 7.9523 5.7354 -0.5335 14 6 9.4817 5.6950 -0.5172 15 1 9.8282 5.2702 0.4249 16 6 10.0342 7.1120 -0.6724 17 8 11.4518 7.0500 -0.8461 18 6 11.8673 6.3534 -2.0234 19 6 11.4094 4.8931 -1.9339 20 7 9.9679 4.8760 -1.6388 21 6 9.1036 4.1245 -2.3894 22 1 8.2247 3.6946 -1.9323 23 6 9.3571 3.9154 -3.7381 24 7 10.0859 4.7794 -4.4125 25 14 8.6641 2.4077 -4.5960 26 1 7.3245 2.7265 -5.1520 27 1 8.5429 1.2948 -3.6201 28 1 9.5738 2.0030 -5.6976 29 6 4.0353 2.7926 -0.2374 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 1.6767 1.9564 0.8900 36 1 1.6766 1.9564 -0.8899 37 1 3.6037 -0.4974 -0.7986 38 1 3.7733 0.8167 -1.9867 39 1 5.8213 0.0635 0.1481 40 1 5.9505 -0.2916 -1.5916 41 1 5.9295 2.1223 -2.1046 42 1 7.2401 1.7521 -0.9567 43 1 8.0312 3.6697 -0.0490 44 1 7.5986 6.4194 0.2380 45 1 7.6083 6.0789 -1.5090 46 1 9.8018 7.6945 0.2192 47 1 9.5808 7.5841 -1.5440 48 1 12.9537 6.3900 -2.1038 49 1 11.4205 6.8218 -2.9003 50 1 11.9533 4.3860 -1.1369 51 1 11.5958 4.3911 -2.8832 52 1 10.3764 5.6028 -3.9901 53 1 3.6032 3.4838 0.4863 54 1 3.7729 3.1121 -1.2460 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001051076290.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:50:32 Heat of formation + Delta-G solvation = -79.355941 kcal Electronic energy + Delta-G solvation = -31906.386078 eV Core-core repulsion = 27877.701350 eV Total energy + Delta-G solvation = -4028.684728 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.41780 -40.34674 -39.42631 -37.05167 -35.96544 -35.62059 -33.46556 -32.72969 -32.22381 -31.80600 -29.05983 -27.44263 -27.05115 -25.15282 -24.91231 -23.95948 -23.43269 -22.32913 -21.67329 -21.05932 -20.63211 -19.22702 -17.99040 -17.56364 -17.17562 -16.97753 -16.75688 -16.41774 -16.27421 -15.97320 -15.70805 -15.55642 -15.47083 -15.18820 -14.97019 -14.89806 -14.79005 -14.37987 -14.27915 -13.74976 -13.49673 -13.35193 -13.27576 -12.96826 -12.85230 -12.66547 -12.65986 -12.41580 -12.23247 -12.13442 -12.07352 -12.04135 -11.87756 -11.79003 -11.60967 -11.41841 -11.33858 -11.27627 -10.90170 -10.65154 -10.35664 -9.90037 -9.34452 -8.80600 -8.11690 -5.38652 1.54159 1.59467 1.64945 1.74744 2.19109 2.61070 2.87596 2.96288 3.24492 3.35073 3.60884 3.73049 3.85026 3.95781 4.01502 4.06950 4.12322 4.17639 4.22962 4.25412 4.32846 4.36464 4.40407 4.43329 4.52965 4.55264 4.57960 4.59401 4.65346 4.70862 4.75689 4.80382 4.84396 4.85680 4.94970 4.96167 4.97695 5.10251 5.12584 5.16012 5.21915 5.22923 5.29600 5.37463 5.41236 5.50605 6.02475 6.03284 6.11451 6.16030 6.47178 6.60656 7.04804 7.27451 7.77328 8.24647 9.08128 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.015705 B = 0.003224 C = 0.002830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.392318 B = 8684.020846 C = 9892.758066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.122 4.122 3 C 0.053 3.947 4 N -0.535 5.535 5 C 0.044 3.956 6 C -0.108 4.108 7 C -0.115 4.115 8 C -0.088 4.088 9 H 0.126 0.874 10 C 0.512 3.488 11 O -0.593 6.593 12 N -0.694 5.694 13 C 0.147 3.853 14 C 0.126 3.874 15 H 0.061 0.939 16 C 0.051 3.949 17 O -0.392 6.392 18 C 0.053 3.947 19 C 0.111 3.889 20 N -0.609 5.609 21 C -0.340 4.340 22 H 0.090 0.910 23 C -0.075 4.075 24 N -0.949 5.949 25 Si 1.089 2.911 26 H -0.302 1.302 27 H -0.256 1.256 28 H -0.297 1.297 29 C 0.086 3.914 30 H 0.049 0.951 31 H 0.066 0.934 32 H 0.058 0.942 33 H 0.067 0.933 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.022 0.978 37 H 0.104 0.896 38 H 0.019 0.981 39 H 0.088 0.912 40 H 0.081 0.919 41 H 0.039 0.961 42 H 0.076 0.924 43 H 0.412 0.588 44 H 0.078 0.922 45 H 0.034 0.966 46 H 0.120 0.880 47 H 0.028 0.972 48 H 0.108 0.892 49 H 0.027 0.973 50 H 0.035 0.965 51 H 0.064 0.936 52 H 0.258 0.742 53 H 0.075 0.925 54 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.536 -9.502 11.950 18.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.159 4.159 3 C -0.075 4.075 4 N -0.259 5.259 5 C -0.083 4.083 6 C -0.146 4.146 7 C -0.153 4.153 8 C -0.110 4.110 9 H 0.144 0.856 10 C 0.299 3.701 11 O -0.474 6.474 12 N -0.345 5.345 13 C 0.022 3.978 14 C 0.020 3.980 15 H 0.079 0.921 16 C -0.027 4.027 17 O -0.310 6.310 18 C -0.025 4.025 19 C -0.014 4.014 20 N -0.335 5.335 21 C -0.470 4.470 22 H 0.107 0.893 23 C -0.272 4.272 24 N -0.592 5.592 25 Si 0.916 3.084 26 H -0.230 1.230 27 H -0.181 1.181 28 H -0.223 1.223 29 C -0.043 4.043 30 H 0.068 0.932 31 H 0.085 0.915 32 H 0.077 0.923 33 H 0.085 0.915 34 H 0.094 0.906 35 H 0.097 0.903 36 H 0.041 0.959 37 H 0.122 0.878 38 H 0.038 0.962 39 H 0.107 0.893 40 H 0.100 0.900 41 H 0.058 0.942 42 H 0.094 0.906 43 H 0.249 0.751 44 H 0.096 0.904 45 H 0.053 0.947 46 H 0.138 0.862 47 H 0.046 0.954 48 H 0.126 0.874 49 H 0.045 0.955 50 H 0.053 0.947 51 H 0.082 0.918 52 H 0.069 0.931 53 H 0.094 0.906 54 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges -10.811 -9.796 10.939 18.235 hybrid contribution 0.047 1.483 -0.355 1.526 sum -10.764 -8.312 10.584 17.233 Atomic orbital electron populations 1.21725 0.94713 1.02406 1.01883 1.21653 0.96394 0.94986 1.02900 1.22243 0.86105 0.98497 1.00630 1.62040 1.08067 1.05984 1.49853 1.22355 0.95769 0.97580 0.92629 1.21579 0.94075 0.95114 1.03810 1.21611 1.00878 0.95677 0.97165 1.21226 0.95989 0.90576 1.03195 0.85631 1.21057 0.82085 0.91057 0.75905 1.90634 1.58503 1.47759 1.50551 1.45923 1.07138 1.12441 1.68983 1.21011 0.92582 0.84433 0.99738 1.21589 0.92024 0.91946 0.92443 0.92124 1.22963 0.81366 0.96881 1.01527 1.87802 1.22383 1.76353 1.44483 1.23006 1.00018 0.93047 0.86448 1.21579 0.84847 0.95038 0.99960 1.44532 1.02162 1.51871 1.34958 1.20671 1.08213 1.26113 0.91979 0.89321 1.26805 1.01050 1.04775 0.94585 1.70862 1.40627 1.09330 1.38421 0.83244 0.74669 0.74854 0.75656 1.22967 1.18068 1.22327 1.21631 0.93005 0.90420 0.99245 0.93190 0.91506 0.92291 0.91488 0.90603 0.90328 0.95931 0.87760 0.96247 0.89300 0.90029 0.94236 0.90584 0.75130 0.90394 0.94702 0.86190 0.95365 0.87384 0.95458 0.94732 0.91818 0.93064 0.90643 0.96702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 9.91 71.98 0.71 -1.11 16 2 C -0.12 -1.76 5.18 30.60 0.16 -1.60 16 3 C 0.05 1.01 5.27 86.30 0.46 1.46 16 4 N -0.54 -11.81 4.81 -896.34 -4.31 -16.11 16 5 C 0.04 0.90 4.85 86.33 0.42 1.32 16 6 C -0.11 -2.23 6.09 30.65 0.19 -2.05 16 7 C -0.12 -3.14 5.16 30.67 0.16 -2.98 16 8 C -0.09 -2.42 2.69 -11.49 -0.03 -2.45 16 9 H 0.13 2.85 8.14 -2.39 -0.02 2.83 16 10 C 0.51 17.95 7.12 87.66 0.62 18.58 16 11 O -0.59 -25.34 15.98 -3.03 -0.05 -25.39 16 12 N -0.69 -23.74 3.20 -463.03 -1.48 -25.22 16 13 C 0.15 5.43 4.55 86.38 0.39 5.83 16 14 C 0.13 4.69 3.13 44.83 0.14 4.83 16 15 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 16 C 0.05 1.82 6.27 71.94 0.45 2.27 16 17 O -0.39 -14.92 10.74 -148.98 -1.60 -16.52 16 18 C 0.05 2.10 6.83 72.08 0.49 2.59 16 19 C 0.11 4.88 5.66 86.35 0.49 5.37 16 20 N -0.61 -27.31 2.83 -674.51 -1.91 -29.22 16 21 C -0.34 -16.80 8.00 84.04 0.67 -16.13 16 22 H 0.09 4.15 4.84 -2.91 -0.01 4.13 16 23 C -0.08 -4.03 4.75 84.86 0.40 -3.63 16 24 N -0.95 -55.38 12.29 21.65 0.27 -55.12 16 25 Si 1.09 49.25 29.99 68.60 2.06 51.30 16 26 H -0.30 -13.86 7.11 99.48 0.71 -13.15 16 27 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 28 H -0.30 -13.83 7.11 99.48 0.71 -13.13 16 29 C 0.09 2.35 4.00 86.33 0.35 2.70 16 30 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.06 0.68 8.14 -2.38 -0.02 0.66 16 33 H 0.07 0.95 6.21 -2.39 -0.01 0.94 16 34 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.08 1.44 8.14 -2.38 -0.02 1.42 16 36 H 0.02 0.48 8.08 -2.39 -0.02 0.46 16 37 H 0.10 1.68 5.81 -2.38 -0.01 1.66 16 38 H 0.02 0.45 8.14 -2.39 -0.02 0.43 16 39 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 40 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 41 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 42 H 0.08 2.10 7.60 -2.39 -0.02 2.09 16 43 H 0.41 13.03 7.18 -92.71 -0.67 12.37 16 44 H 0.08 2.53 8.14 -2.38 -0.02 2.51 16 45 H 0.03 1.59 7.80 -2.39 -0.02 1.57 16 46 H 0.12 3.35 8.14 -2.39 -0.02 3.33 16 47 H 0.03 1.11 8.13 -2.39 -0.02 1.09 16 48 H 0.11 3.65 8.14 -2.39 -0.02 3.63 16 49 H 0.03 1.22 6.77 -2.39 -0.02 1.20 16 50 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 51 H 0.06 3.19 5.87 -2.39 -0.01 3.18 16 52 H 0.26 15.11 5.60 -92.71 -0.52 14.59 16 53 H 0.08 2.11 8.10 -2.39 -0.02 2.09 16 54 H 0.01 0.48 8.08 -2.38 -0.02 0.46 16 Total: -1.00 -65.63 402.81 -0.50 -66.13 By element: Atomic # 1 Polarization: 34.69 SS G_CDS: 0.46 Total: 35.15 kcal Atomic # 6 Polarization: 8.93 SS G_CDS: 6.07 Total: 15.00 kcal Atomic # 7 Polarization: -118.23 SS G_CDS: -7.44 Total: -125.67 kcal Atomic # 8 Polarization: -40.26 SS G_CDS: -1.65 Total: -41.91 kcal Atomic # 14 Polarization: 49.25 SS G_CDS: 2.06 Total: 51.30 kcal Total: -65.63 -0.50 -66.13 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051076290.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.225 kcal (2) G-P(sol) polarization free energy of solvation -65.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds