Wall clock time and date at job start Sat Apr 11 2020 05:51:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52995 * 109.46781 * 2 1 4 4 N 1.46900 * 109.46670 * 119.99482 * 2 1 3 5 5 C 1.47014 * 111.00138 * 298.95361 * 4 2 1 6 6 C 1.53097 * 109.25436 * 177.61026 * 5 4 2 7 7 O 1.43022 * 109.26245 * 56.85399 * 6 5 4 8 8 C 1.43014 * 113.73148 * 301.32863 * 7 6 5 9 9 H 1.09003 * 109.50968 * 298.68467 * 8 7 6 10 10 C 1.50707 * 109.50459 * 178.60210 * 8 7 6 11 11 O 1.21286 * 119.99645 * 355.08631 * 10 8 7 12 12 N 1.34775 * 120.00100 * 175.08693 * 10 8 7 13 13 C 1.46497 * 119.99958 * 180.02562 * 12 10 8 14 14 H 1.09006 * 109.48980 * 325.04756 * 13 12 10 15 15 C 1.52563 * 109.49236 * 205.00100 * 13 12 10 16 16 C 1.47091 * 114.33187 * 155.02117 * 15 13 12 17 17 C 1.54864 * 110.32152 * 62.79884 * 16 15 13 18 18 N 1.44577 * 109.60033 * 288.73811 * 17 16 15 19 19 C 1.36940 * 118.64357 * 270.44557 * 18 17 16 20 20 H 1.07999 * 119.99679 * 26.53605 * 19 18 17 21 21 C 1.38811 * 120.00193 * 206.53827 * 19 18 17 22 22 N 1.31619 * 120.00110 * 15.79414 * 21 19 18 23 23 Si 1.86798 * 119.99834 * 195.79758 * 21 19 18 24 24 H 1.48498 * 109.47353 * 59.99702 * 23 21 19 25 25 H 1.48509 * 109.46891 * 179.97438 * 23 21 19 26 26 H 1.48494 * 109.47022 * 299.99507 * 23 21 19 27 27 C 1.47605 * 122.71704 * 90.72800 * 18 17 16 28 28 C 1.50886 * 109.49146 * 85.11231 * 13 12 10 29 29 C 1.47023 * 110.99048 * 175.27822 * 4 2 1 30 30 H 1.08999 * 109.47269 * 300.00027 * 1 2 3 31 31 H 1.08999 * 109.46765 * 60.00755 * 1 2 3 32 32 H 1.09005 * 109.46378 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.47269 * 239.99973 * 2 1 3 34 34 H 1.09002 * 109.47507 * 299.99835 * 3 2 1 35 35 H 1.09004 * 109.47793 * 59.99501 * 3 2 1 36 36 H 1.09002 * 109.47297 * 179.97438 * 3 2 1 37 37 H 1.08998 * 109.50426 * 57.68384 * 5 4 2 38 38 H 1.08994 * 109.54544 * 297.56395 * 5 4 2 39 39 H 1.09003 * 109.51114 * 296.91703 * 6 5 4 40 40 H 1.09003 * 109.54635 * 176.80955 * 6 5 4 41 41 H 0.97001 * 119.99905 * 359.97438 * 12 10 8 42 42 H 1.08998 * 108.51276 * 33.76349 * 15 13 12 43 43 H 1.09002 * 108.51277 * 276.27672 * 15 13 12 44 44 H 1.09000 * 109.32478 * 302.54448 * 16 15 13 45 45 H 1.09001 * 109.19108 * 182.97469 * 16 15 13 46 46 H 1.09004 * 109.45192 * 168.69578 * 17 16 15 47 47 H 1.09007 * 109.45128 * 48.77425 * 17 16 15 48 48 H 0.97000 * 120.00244 * 180.02562 * 22 21 19 49 49 H 1.09000 * 108.94702 * 78.54535 * 27 18 17 50 50 H 1.08997 * 108.95177 * 197.18275 * 27 18 17 51 51 H 1.08996 * 109.36398 * 332.04679 * 28 13 12 52 52 H 1.08998 * 109.36320 * 91.66454 * 28 13 12 53 53 H 1.08998 * 109.47640 * 62.43993 * 29 4 2 54 54 H 1.09004 * 109.54527 * 302.30532 * 29 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6924 1.1995 5 6 1.5688 -0.0113 2.4219 6 6 2.0497 -0.7974 3.6445 7 8 3.4730 -0.9283 3.5912 8 6 3.9467 -1.5877 2.4139 9 1 3.5457 -2.6007 2.3777 10 6 5.4525 -1.6433 2.4397 11 8 6.0646 -1.0884 3.3276 12 7 6.1189 -2.3096 1.4762 13 6 7.5826 -2.3641 1.5016 14 1 7.9749 -1.4235 1.8883 15 6 8.1082 -2.5918 0.0876 16 6 9.4787 -2.1064 -0.1350 17 6 10.4742 -2.8714 0.7717 18 7 10.2924 -2.4609 2.1460 19 6 11.0142 -1.3953 2.6137 20 1 11.3536 -0.6312 1.9300 21 6 11.3097 -1.2973 3.9664 22 7 11.1801 -2.3495 4.7464 23 14 11.8913 0.3282 4.6799 24 1 10.8498 1.3645 4.4642 25 1 12.1373 0.1699 6.1359 26 1 13.1486 0.7424 4.0072 27 6 9.3655 -3.1466 3.0675 28 6 8.0288 -3.4992 2.3899 29 6 3.4849 -0.8106 1.1782 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8901 32 1 -0.3632 -1.0278 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.6766 1.9564 -0.8900 35 1 1.6766 1.9564 0.8899 36 1 3.1300 1.4426 0.0005 37 1 0.4801 0.0416 2.4286 38 1 1.9825 0.9966 2.4515 39 1 1.5930 -1.7871 3.6437 40 1 1.7668 -0.2668 4.5536 41 1 5.6292 -2.7537 0.7663 42 1 7.4441 -2.0870 -0.6140 43 1 8.0811 -3.6608 -0.1238 44 1 9.5262 -1.0420 0.0949 45 1 9.7489 -2.2623 -1.1795 46 1 11.4945 -2.6498 0.4585 47 1 10.2933 -3.9430 0.6861 48 1 11.3862 -2.2809 5.6917 49 1 9.8345 -4.0639 3.4236 50 1 9.1693 -2.4971 3.9205 51 1 7.2726 -3.6790 3.1539 52 1 8.1546 -4.4001 1.7893 53 1 3.9299 0.1844 1.1868 54 1 3.7950 -1.3410 0.2778 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052658002.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:51:03 Heat of formation + Delta-G solvation = -72.266107 kcal Electronic energy + Delta-G solvation = -31790.854457 eV Core-core repulsion = 27762.477167 eV Total energy + Delta-G solvation = -4028.377290 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.63162 -40.43840 -39.10931 -37.75034 -36.31247 -34.58239 -33.30923 -32.67790 -32.51670 -31.67095 -28.42760 -28.11590 -27.50944 -25.71228 -25.31463 -25.00934 -23.12941 -21.71384 -21.28755 -20.96885 -20.51373 -18.57580 -18.43181 -17.90430 -17.24141 -17.03726 -16.68495 -16.53891 -16.15007 -15.90720 -15.81789 -15.63375 -15.28985 -15.07839 -15.01092 -14.74868 -14.42506 -14.01578 -13.94539 -13.83966 -13.61457 -13.28840 -13.11499 -13.01600 -12.94256 -12.76296 -12.73744 -12.53103 -12.37015 -12.17519 -12.07179 -12.02418 -11.76702 -11.74269 -11.59305 -11.50604 -11.38552 -11.34534 -10.82786 -10.67528 -10.43671 -10.09437 -9.43193 -8.64726 -7.86181 -5.31086 1.38604 1.45229 1.49058 1.52923 1.81816 2.49586 2.65834 3.03705 3.28380 3.62806 3.67079 3.72790 3.82867 3.86750 3.95188 3.96650 4.09975 4.15825 4.22689 4.31354 4.38865 4.41813 4.47239 4.49159 4.49540 4.63822 4.66390 4.70763 4.74834 4.85099 4.85860 4.88238 4.95571 5.00172 5.01980 5.04906 5.16933 5.23248 5.26381 5.27121 5.36578 5.38197 5.51710 5.58937 5.62980 5.70825 5.78141 5.85369 5.97792 6.03345 6.40970 6.60134 7.18528 7.29738 7.97172 8.34735 9.18524 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.014788 B = 0.002919 C = 0.002734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1893.010210 B = 9589.543214 C =10240.042408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.074 3.926 3 C -0.188 4.188 4 N -0.524 5.524 5 C 0.012 3.988 6 C 0.056 3.944 7 O -0.395 6.395 8 C 0.087 3.913 9 H 0.115 0.885 10 C 0.509 3.491 11 O -0.574 6.574 12 N -0.702 5.702 13 C 0.164 3.836 14 H 0.046 0.954 15 C -0.102 4.102 16 C -0.132 4.132 17 C 0.147 3.853 18 N -0.604 5.604 19 C -0.260 4.260 20 H 0.065 0.935 21 C -0.052 4.052 22 N -0.935 5.935 23 Si 0.956 3.044 24 H -0.290 1.290 25 H -0.294 1.294 26 H -0.267 1.267 27 C 0.195 3.805 28 C -0.132 4.132 29 C 0.036 3.964 30 H 0.056 0.944 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.095 0.905 34 H 0.076 0.924 35 H 0.053 0.947 36 H 0.042 0.958 37 H 0.114 0.886 38 H 0.035 0.965 39 H 0.074 0.926 40 H 0.111 0.889 41 H 0.417 0.583 42 H 0.082 0.918 43 H 0.083 0.917 44 H 0.035 0.965 45 H 0.092 0.908 46 H 0.038 0.962 47 H 0.050 0.950 48 H 0.246 0.754 49 H -0.003 1.003 50 H 0.025 0.975 51 H 0.046 0.954 52 H 0.079 0.921 53 H 0.031 0.969 54 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.341 0.088 -15.283 29.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.033 4.033 3 C -0.247 4.247 4 N -0.249 5.249 5 C -0.116 4.116 6 C -0.020 4.020 7 O -0.314 6.314 8 C 0.026 3.974 9 H 0.132 0.868 10 C 0.294 3.706 11 O -0.452 6.452 12 N -0.356 5.356 13 C 0.059 3.941 14 H 0.065 0.935 15 C -0.140 4.140 16 C -0.173 4.173 17 C 0.020 3.980 18 N -0.326 5.326 19 C -0.391 4.391 20 H 0.083 0.917 21 C -0.247 4.247 22 N -0.581 5.581 23 Si 0.785 3.215 24 H -0.217 1.217 25 H -0.220 1.220 26 H -0.192 1.192 27 C 0.069 3.931 28 C -0.171 4.171 29 C -0.093 4.093 30 H 0.075 0.925 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.113 0.887 34 H 0.095 0.905 35 H 0.072 0.928 36 H 0.061 0.939 37 H 0.132 0.868 38 H 0.054 0.946 39 H 0.093 0.907 40 H 0.129 0.871 41 H 0.255 0.745 42 H 0.101 0.899 43 H 0.102 0.898 44 H 0.054 0.946 45 H 0.110 0.890 46 H 0.056 0.944 47 H 0.068 0.932 48 H 0.055 0.945 49 H 0.015 0.985 50 H 0.043 0.957 51 H 0.064 0.936 52 H 0.097 0.903 53 H 0.049 0.951 54 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -24.953 0.030 -14.358 28.789 hybrid contribution 0.839 1.567 0.921 2.002 sum -24.114 1.597 -13.437 27.651 Atomic orbital electron populations 1.21838 0.92623 1.02836 1.02461 1.21850 0.96945 0.92077 0.92463 1.22485 1.00774 0.98516 1.02914 1.62552 1.08367 1.51136 1.02823 1.22917 1.02683 0.96023 0.90000 1.22994 0.78978 1.01250 0.98787 1.88128 1.23673 1.79364 1.40249 1.21952 0.89499 0.99070 0.86899 0.86797 1.20801 0.90015 0.78137 0.81653 1.90797 1.70622 1.46415 1.37347 1.45915 1.07154 1.54208 1.28312 1.20195 0.78161 0.98410 0.97316 0.93528 1.20513 0.97153 1.03044 0.93241 1.21296 0.95812 0.99793 1.00385 1.20974 0.96830 0.96591 0.83556 1.43842 1.45205 1.35308 1.08272 1.19441 1.27664 0.99686 0.92297 0.91720 1.25723 1.00946 0.99666 0.98343 1.70198 1.54333 1.28863 1.04745 0.85507 0.78359 0.80554 0.77111 1.21687 1.22043 1.19213 1.20580 0.87090 0.94083 0.91327 1.22237 0.97237 0.98625 0.99048 1.22608 0.89494 0.99447 0.97743 0.92459 0.90915 0.91508 0.88677 0.90518 0.92827 0.93921 0.86776 0.94638 0.90737 0.87087 0.74514 0.89921 0.89838 0.94626 0.88979 0.94352 0.93199 0.94486 0.98507 0.95672 0.93559 0.90281 0.95053 0.86608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.18 8.99 71.98 0.65 -0.54 16 2 C 0.07 0.87 2.97 44.92 0.13 1.00 16 3 C -0.19 -2.53 8.49 71.98 0.61 -1.92 16 4 N -0.52 -7.96 4.72 -869.95 -4.10 -12.06 16 5 C 0.01 0.18 4.86 86.31 0.42 0.60 16 6 C 0.06 1.06 7.01 72.01 0.50 1.57 16 7 O -0.40 -11.78 10.01 -130.02 -1.30 -13.08 16 8 C 0.09 2.16 3.21 29.88 0.10 2.26 16 9 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 10 C 0.51 17.20 7.00 87.66 0.61 17.81 16 11 O -0.57 -27.78 16.17 15.91 0.26 -27.52 16 12 N -0.70 -19.14 4.89 -446.50 -2.19 -21.33 16 13 C 0.16 5.75 2.06 44.16 0.09 5.84 16 14 H 0.05 2.22 6.92 -2.38 -0.02 2.20 16 15 C -0.10 -2.70 4.69 28.61 0.13 -2.57 16 16 C -0.13 -4.16 5.74 29.39 0.17 -3.99 16 17 C 0.15 5.87 5.66 87.37 0.49 6.36 16 18 N -0.60 -31.12 2.27 -698.35 -1.59 -32.70 16 19 C -0.26 -15.09 9.44 84.03 0.79 -14.30 16 20 H 0.07 3.65 7.88 -2.91 -0.02 3.63 16 21 C -0.05 -3.12 4.87 84.86 0.41 -2.70 16 22 N -0.93 -59.51 11.00 21.65 0.24 -59.27 16 23 Si 0.96 49.12 29.58 68.60 2.03 51.15 16 24 H -0.29 -15.06 7.11 99.48 0.71 -14.35 16 25 H -0.29 -15.15 7.11 99.48 0.71 -14.44 16 26 H -0.27 -12.84 7.11 99.48 0.71 -12.13 16 27 C 0.20 10.20 4.66 86.49 0.40 10.60 16 28 C -0.13 -5.18 5.39 30.23 0.16 -5.02 16 29 C 0.04 0.68 4.55 86.31 0.39 1.07 16 30 H 0.06 0.48 6.37 -2.39 -0.02 0.47 16 31 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.07 0.57 8.14 -2.38 -0.02 0.55 16 33 H 0.10 0.97 8.13 -2.39 -0.02 0.95 16 34 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.05 0.78 6.44 -2.38 -0.02 0.77 16 36 H 0.04 0.72 6.57 -2.39 -0.02 0.70 16 37 H 0.11 1.24 6.21 -2.39 -0.01 1.23 16 38 H 0.04 0.67 6.43 -2.39 -0.02 0.65 16 39 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 41 H 0.42 7.10 8.48 -92.71 -0.79 6.31 16 42 H 0.08 1.70 8.04 -2.39 -0.02 1.68 16 43 H 0.08 1.83 7.36 -2.39 -0.02 1.81 16 44 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 45 H 0.09 2.21 8.14 -2.39 -0.02 2.20 16 46 H 0.04 1.57 7.98 -2.39 -0.02 1.55 16 47 H 0.05 1.81 8.07 -2.38 -0.02 1.79 16 48 H 0.25 15.34 8.31 -92.71 -0.77 14.57 16 49 H 0.00 -0.18 8.03 -2.39 -0.02 -0.20 16 50 H 0.02 1.55 6.33 -2.39 -0.02 1.54 16 51 H 0.05 1.89 7.85 -2.39 -0.02 1.87 16 52 H 0.08 2.60 7.32 -2.39 -0.02 2.59 16 53 H 0.03 0.74 6.55 -2.39 -0.02 0.73 16 54 H 0.12 1.55 8.01 -2.39 -0.02 1.53 16 Total: -1.00 -82.37 401.96 -0.48 -82.85 By element: Atomic # 1 Polarization: 15.80 SS G_CDS: 0.09 Total: 15.89 kcal Atomic # 6 Polarization: 10.00 SS G_CDS: 6.08 Total: 16.08 kcal Atomic # 7 Polarization: -117.72 SS G_CDS: -7.64 Total: -125.36 kcal Atomic # 8 Polarization: -39.56 SS G_CDS: -1.04 Total: -40.61 kcal Atomic # 14 Polarization: 49.12 SS G_CDS: 2.03 Total: 51.15 kcal Total: -82.37 -0.48 -82.85 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052658002.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.584 kcal (2) G-P(sol) polarization free energy of solvation -82.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds