Wall clock time and date at job start Sat Apr 11 2020 05:51:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47358 * 2 1 4 4 N 1.46901 * 109.47216 * 119.99917 * 2 1 3 5 5 C 1.48560 * 111.00333 * 291.44655 * 4 2 1 6 6 C 1.54378 * 104.59808 * 200.95836 * 5 4 2 7 7 C 1.54258 * 105.05824 * 23.84712 * 6 5 4 8 8 C 1.48718 * 111.01978 * 175.93372 * 4 2 1 9 9 H 1.09000 * 110.38531 * 40.24425 * 8 4 2 10 10 C 1.50706 * 110.50756 * 277.75514 * 8 4 2 11 11 O 1.21280 * 119.99918 * 3.40720 * 10 8 4 12 12 N 1.34780 * 119.99778 * 183.40762 * 10 8 4 13 13 C 1.46493 * 119.99794 * 179.97438 * 12 10 8 14 14 C 1.53002 * 109.47303 * 180.02562 * 13 12 10 15 15 H 1.09000 * 109.40188 * 304.84492 * 14 13 12 16 16 C 1.54289 * 109.40696 * 185.00285 * 14 13 12 17 17 N 1.48182 * 110.69010 * 200.49133 * 16 14 13 18 18 C 1.36944 * 118.50847 * 138.77315 * 17 16 14 19 19 H 1.08000 * 119.99645 * 208.62241 * 18 17 16 20 20 C 1.38813 * 119.99864 * 28.62773 * 18 17 16 21 21 N 1.31613 * 120.00229 * 12.12222 * 20 18 17 22 22 Si 1.86803 * 119.99741 * 192.11985 * 20 18 17 23 23 H 1.48502 * 109.47262 * 359.97438 * 22 20 18 24 24 H 1.48493 * 109.47225 * 119.99881 * 22 20 18 25 25 H 1.48495 * 109.47254 * 240.00412 * 22 20 18 26 26 C 1.44458 * 122.97761 * 318.79170 * 17 16 14 27 27 C 1.54878 * 109.32218 * 88.91610 * 26 17 16 28 28 C 1.47690 * 109.67942 * 290.10169 * 27 26 17 29 29 O 1.40525 * 109.40114 * 64.59720 * 14 13 12 30 30 H 1.08990 * 109.47617 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46958 * 300.00087 * 1 2 3 32 32 H 1.09005 * 109.46766 * 59.99402 * 1 2 3 33 33 H 1.08993 * 109.47388 * 240.00042 * 2 1 3 34 34 H 1.09001 * 109.47278 * 172.02361 * 3 2 1 35 35 H 1.08994 * 109.47172 * 292.02795 * 3 2 1 36 36 H 1.09004 * 109.47093 * 52.02883 * 3 2 1 37 37 H 1.08997 * 110.41178 * 82.17484 * 5 4 2 38 38 H 1.08998 * 110.50867 * 319.78937 * 5 4 2 39 39 H 1.09005 * 110.32019 * 264.95946 * 6 5 4 40 40 H 1.08993 * 110.41404 * 142.78920 * 6 5 4 41 41 H 1.09000 * 110.32233 * 118.89563 * 7 6 5 42 42 H 1.08995 * 110.32699 * 241.00355 * 7 6 5 43 43 H 0.96998 * 119.99820 * 0.02562 * 12 10 8 44 44 H 1.08997 * 109.47570 * 300.00528 * 13 12 10 45 45 H 1.09008 * 109.47244 * 60.00503 * 13 12 10 46 46 H 1.08994 * 109.23627 * 320.80505 * 16 14 13 47 47 H 1.09003 * 109.23223 * 80.22165 * 16 14 13 48 48 H 0.97007 * 120.00037 * 180.02562 * 21 20 18 49 49 H 1.08992 * 109.49867 * 208.86827 * 26 17 16 50 50 H 1.08996 * 109.49164 * 328.93698 * 26 17 16 51 51 H 1.09002 * 109.44101 * 50.17014 * 27 26 17 52 52 H 1.09004 * 109.43160 * 170.08372 * 27 26 17 53 53 H 1.09000 * 108.64399 * 181.88637 * 28 27 26 54 54 H 1.08994 * 108.64478 * 299.72150 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 1.7191 0.0899 2.4260 6 6 2.7158 -0.4396 3.4793 7 6 3.8884 -1.0226 2.6640 8 6 3.5030 -0.7984 1.1860 9 1 3.9462 0.1251 0.8134 10 6 3.9411 -1.9698 0.3451 11 8 3.1170 -2.6293 -0.2523 12 7 5.2487 -2.2844 0.2569 13 6 5.6745 -3.4234 -0.5601 14 6 7.1965 -3.5617 -0.4885 15 1 7.6599 -2.6201 -0.7831 16 6 7.6552 -4.6807 -1.4466 17 7 8.9981 -5.1781 -1.0659 18 6 9.2336 -6.5263 -1.1140 19 1 9.9616 -6.9712 -0.4517 20 6 8.5368 -7.3209 -2.0139 21 7 7.8331 -6.7635 -2.9763 22 14 8.5980 -9.1815 -1.8590 23 1 9.4528 -9.5542 -0.7033 24 1 7.2248 -9.7062 -1.6493 25 1 9.1658 -9.7633 -3.1017 26 6 10.0700 -4.3054 -0.6460 27 6 9.9933 -4.1007 0.8873 28 6 8.8101 -3.2823 1.2212 29 8 7.5754 -3.8750 0.8279 30 1 -0.3634 -1.0275 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5140 -0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 3.1207 1.4458 0.1426 35 1 1.7978 1.9135 -0.9526 36 1 1.5650 1.9958 0.8102 37 1 0.6936 -0.0890 2.7492 38 1 1.8812 1.1533 2.2500 39 1 2.2502 -1.2187 4.0830 40 1 3.0645 0.3739 4.1154 41 1 4.8123 -0.4940 2.8986 42 1 3.9996 -2.0873 2.8689 43 1 5.9077 -1.7571 0.7350 44 1 5.2091 -4.3345 -0.1840 45 1 5.3723 -3.2615 -1.5948 46 1 6.9422 -5.5040 -1.4047 47 1 7.6927 -4.2898 -2.4635 48 1 7.3458 -7.3188 -3.6050 49 1 11.0282 -4.7552 -0.9054 50 1 9.9725 -3.3424 -1.1473 51 1 9.9144 -5.0701 1.3792 52 1 10.8941 -3.5919 1.2307 53 1 8.7911 -3.1207 2.2990 54 1 8.9051 -2.3149 0.7284 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073599825.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:51:20 Heat of formation + Delta-G solvation = -68.227905 kcal Electronic energy + Delta-G solvation = -31505.218891 eV Core-core repulsion = 27477.016711 eV Total energy + Delta-G solvation = -4028.202181 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.46271 -40.42916 -39.25941 -36.87258 -35.97828 -35.33949 -34.09465 -32.94107 -31.02717 -30.19218 -29.67853 -28.13963 -27.12438 -27.03063 -24.68057 -23.69662 -22.61872 -22.35568 -21.56283 -21.01233 -20.29245 -18.84898 -18.29809 -17.76739 -17.50526 -17.20015 -16.71178 -16.41114 -15.99979 -15.82131 -15.57701 -15.45551 -15.17274 -14.87935 -14.60344 -14.51124 -14.21133 -14.12311 -13.91283 -13.80724 -13.65860 -13.37094 -13.29064 -13.02322 -12.80856 -12.66641 -12.52285 -12.41587 -12.34016 -12.30249 -12.13744 -12.05225 -11.99518 -11.79439 -11.69508 -11.44338 -11.35798 -11.32026 -10.79612 -10.57960 -10.25775 -10.10628 -9.30567 -8.64239 -7.86324 -5.34865 1.42196 1.45292 1.54260 1.66913 2.04750 2.50005 2.92801 3.06882 3.28275 3.56984 3.60071 3.60438 3.90348 4.01612 4.05481 4.09441 4.13841 4.15946 4.24028 4.28083 4.33884 4.39513 4.47214 4.57119 4.59564 4.63099 4.67784 4.70873 4.79709 4.80338 4.87643 4.89603 4.89653 4.94400 5.01708 5.12791 5.13942 5.15535 5.20803 5.22712 5.27681 5.34498 5.39754 5.43033 5.52364 5.62125 5.70463 5.87314 6.13765 6.40404 6.59042 6.61462 7.17104 7.31412 7.92700 8.31038 9.18033 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.016214 B = 0.002676 C = 0.002478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1726.500245 B =10462.412732 C =11298.596529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.062 3.938 3 C -0.182 4.182 4 N -0.508 5.508 5 C 0.025 3.975 6 C -0.118 4.118 7 C -0.113 4.113 8 C 0.046 3.954 9 H 0.103 0.897 10 C 0.514 3.486 11 O -0.573 6.573 12 N -0.708 5.708 13 C 0.139 3.861 14 C 0.080 3.920 15 H 0.075 0.925 16 C 0.175 3.825 17 N -0.603 5.603 18 C -0.259 4.259 19 H 0.061 0.939 20 C -0.049 4.049 21 N -0.934 5.934 22 Si 0.961 3.039 23 H -0.268 1.268 24 H -0.295 1.295 25 H -0.289 1.289 26 C 0.147 3.853 27 C -0.170 4.170 28 C 0.068 3.932 29 O -0.377 6.377 30 H 0.042 0.958 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.054 0.946 34 H 0.059 0.941 35 H 0.068 0.932 36 H 0.077 0.923 37 H 0.084 0.916 38 H 0.072 0.928 39 H 0.066 0.934 40 H 0.098 0.902 41 H 0.106 0.894 42 H 0.056 0.944 43 H 0.413 0.587 44 H 0.043 0.957 45 H 0.068 0.932 46 H 0.038 0.962 47 H 0.011 0.989 48 H 0.248 0.752 49 H 0.041 0.959 50 H 0.045 0.955 51 H 0.041 0.959 52 H 0.097 0.903 53 H 0.097 0.903 54 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.339 22.555 13.171 27.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.047 4.047 3 C -0.240 4.240 4 N -0.233 5.233 5 C -0.102 4.102 6 C -0.156 4.156 7 C -0.151 4.151 8 C -0.066 4.066 9 H 0.121 0.879 10 C 0.301 3.699 11 O -0.451 6.451 12 N -0.361 5.361 13 C 0.014 3.986 14 C 0.020 3.980 15 H 0.093 0.907 16 C 0.049 3.951 17 N -0.325 5.325 18 C -0.390 4.390 19 H 0.078 0.922 20 C -0.244 4.244 21 N -0.581 5.581 22 Si 0.790 3.210 23 H -0.192 1.192 24 H -0.222 1.222 25 H -0.216 1.216 26 C 0.021 3.979 27 C -0.211 4.211 28 C -0.008 4.008 29 O -0.296 6.296 30 H 0.061 0.939 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.087 0.913 36 H 0.096 0.904 37 H 0.102 0.898 38 H 0.090 0.910 39 H 0.085 0.915 40 H 0.116 0.884 41 H 0.124 0.876 42 H 0.075 0.925 43 H 0.249 0.751 44 H 0.062 0.938 45 H 0.086 0.914 46 H 0.057 0.943 47 H 0.029 0.971 48 H 0.057 0.943 49 H 0.059 0.941 50 H 0.064 0.936 51 H 0.060 0.940 52 H 0.115 0.885 53 H 0.115 0.885 54 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -8.380 21.384 12.734 26.261 hybrid contribution 0.716 -0.784 -0.743 1.296 sum -7.663 20.600 11.991 25.037 Atomic orbital electron populations 1.21704 0.93265 1.01555 1.02531 1.21799 0.96912 0.93123 0.92816 1.22456 1.01455 0.96536 1.03537 1.65278 1.08126 1.46782 1.03075 1.23309 1.00594 0.97079 0.89169 1.22297 0.94711 1.01294 0.97314 1.22312 1.00498 1.02010 0.90316 1.22704 0.91391 0.95589 0.96917 0.87923 1.21065 0.81726 0.86045 0.81083 1.90685 1.53150 1.53962 1.47340 1.45746 1.07833 1.32009 1.50514 1.21134 0.93391 0.88924 0.95132 1.22720 0.92692 0.98107 0.84526 0.90711 1.21348 0.86489 0.94406 0.92903 1.43809 1.07368 1.03075 1.78284 1.19460 1.21405 0.84878 1.13220 0.92161 1.25777 1.00994 1.02034 0.95604 1.70161 1.36011 1.34821 1.17081 0.85300 0.77010 0.81305 0.77426 1.19211 1.22193 1.21629 1.20921 0.90599 0.93216 0.93184 1.22155 0.99485 1.00680 0.98735 1.21572 0.83513 0.94934 1.00792 1.87433 1.38738 1.75238 1.28153 0.93897 0.91335 0.91282 0.92778 0.92216 0.91338 0.90375 0.89814 0.90971 0.91507 0.88359 0.87569 0.92546 0.75084 0.93848 0.91351 0.94300 0.97105 0.94304 0.94084 0.93628 0.94010 0.88457 0.88461 0.91796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.39 9.22 71.98 0.66 -1.73 16 2 C 0.06 1.27 2.80 44.91 0.13 1.40 16 3 C -0.18 -2.49 8.28 71.98 0.60 -1.89 16 4 N -0.51 -11.05 4.65 -835.62 -3.89 -14.93 16 5 C 0.03 0.36 5.46 86.45 0.47 0.84 16 6 C -0.12 -1.49 7.00 31.49 0.22 -1.27 16 7 C -0.11 -1.77 6.47 31.49 0.20 -1.57 16 8 C 0.05 0.93 2.55 44.29 0.11 1.04 16 9 H 0.10 1.62 5.79 -2.39 -0.01 1.60 16 10 C 0.51 15.33 6.90 87.66 0.60 15.94 16 11 O -0.57 -23.08 15.72 -3.03 -0.05 -23.13 16 12 N -0.71 -19.39 5.43 -463.06 -2.51 -21.91 16 13 C 0.14 4.95 5.24 86.38 0.45 5.41 16 14 C 0.08 2.87 2.35 31.03 0.07 2.95 16 15 H 0.08 2.28 7.20 -2.39 -0.02 2.27 16 16 C 0.17 8.47 4.48 86.49 0.39 8.85 16 17 N -0.60 -30.04 2.58 -696.47 -1.80 -31.84 16 18 C -0.26 -14.48 9.41 84.03 0.79 -13.69 16 19 H 0.06 3.34 7.86 -2.91 -0.02 3.31 16 20 C -0.05 -2.81 4.95 84.86 0.42 -2.39 16 21 N -0.93 -56.37 10.94 21.65 0.24 -56.14 16 22 Si 0.96 46.71 29.57 68.60 2.03 48.74 16 23 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 24 H -0.29 -14.52 7.11 99.48 0.71 -13.82 16 25 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 26 C 0.15 5.78 5.68 87.40 0.50 6.28 16 27 C -0.17 -5.32 6.03 29.57 0.18 -5.14 16 28 C 0.07 1.85 6.04 70.32 0.42 2.27 16 29 O -0.38 -13.42 9.76 -144.91 -1.41 -14.84 16 30 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.07 0.99 7.20 -2.38 -0.02 0.97 16 32 H 0.07 1.05 8.14 -2.38 -0.02 1.04 16 33 H 0.05 1.48 7.33 -2.39 -0.02 1.46 16 34 H 0.06 0.78 5.93 -2.39 -0.01 0.77 16 35 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.08 0.82 6.39 -2.39 -0.02 0.80 16 37 H 0.08 1.19 7.74 -2.39 -0.02 1.17 16 38 H 0.07 0.76 5.48 -2.39 -0.01 0.75 16 39 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 40 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 41 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 42 H 0.06 1.17 7.85 -2.39 -0.02 1.15 16 43 H 0.41 8.46 8.44 -92.71 -0.78 7.67 16 44 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 45 H 0.07 2.56 8.14 -2.38 -0.02 2.54 16 46 H 0.04 2.20 6.33 -2.39 -0.02 2.18 16 47 H 0.01 0.57 7.99 -2.39 -0.02 0.56 16 48 H 0.25 14.60 8.31 -92.70 -0.77 13.83 16 49 H 0.04 1.65 7.97 -2.39 -0.02 1.64 16 50 H 0.05 1.62 8.10 -2.39 -0.02 1.60 16 51 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 52 H 0.10 2.30 8.14 -2.38 -0.02 2.28 16 53 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 54 H 0.06 1.40 7.27 -2.39 -0.02 1.38 16 Total: -1.00 -75.54 405.58 -1.08 -76.62 By element: Atomic # 1 Polarization: 20.04 SS G_CDS: 0.10 Total: 20.14 kcal Atomic # 6 Polarization: 11.06 SS G_CDS: 6.22 Total: 17.29 kcal Atomic # 7 Polarization: -116.85 SS G_CDS: -7.96 Total: -124.82 kcal Atomic # 8 Polarization: -36.50 SS G_CDS: -1.46 Total: -37.96 kcal Atomic # 14 Polarization: 46.71 SS G_CDS: 2.03 Total: 48.74 kcal Total: -75.54 -1.08 -76.62 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073599825.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.389 kcal (2) G-P(sol) polarization free energy of solvation -75.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds