Wall clock time and date at job start Sat Apr 11 2020 05:51:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.46976 * 2 1 4 4 N 1.46899 * 109.47148 * 180.02562 * 3 2 1 5 5 C 1.48562 * 110.99792 * 285.42346 * 4 3 2 6 6 C 1.54386 * 104.59100 * 200.95926 * 5 4 3 7 7 C 1.54258 * 105.06331 * 23.85028 * 6 5 4 8 8 C 1.48552 * 111.00270 * 170.00456 * 4 3 2 9 9 H 1.09001 * 110.51296 * 40.20778 * 8 4 3 10 10 C 1.50704 * 110.41242 * 277.81921 * 8 4 3 11 11 O 1.21285 * 119.99403 * 3.37081 * 10 8 4 12 12 N 1.34776 * 120.00642 * 183.37009 * 10 8 4 13 13 C 1.46497 * 120.00482 * 179.97438 * 12 10 8 14 14 C 1.52990 * 109.47151 * 180.02562 * 13 12 10 15 15 H 1.09000 * 108.45600 * 62.12304 * 14 13 12 16 16 C 1.46917 * 108.62166 * 180.02562 * 14 13 12 17 17 N 1.50118 * 106.78313 * 177.91937 * 16 14 13 18 18 C 1.36935 * 120.63776 * 111.36293 * 17 16 14 19 19 H 1.07996 * 120.00294 * 155.63003 * 18 17 16 20 20 C 1.38820 * 119.99804 * 335.62997 * 18 17 16 21 21 N 1.31618 * 119.99887 * 340.74654 * 20 18 17 22 22 Si 1.86805 * 119.99847 * 160.74917 * 20 18 17 23 23 H 1.48504 * 109.46836 * 59.99745 * 22 20 18 24 24 H 1.48495 * 109.47037 * 180.02562 * 22 20 18 25 25 H 1.48506 * 109.47054 * 299.99892 * 22 20 18 26 26 C 1.43426 * 118.72546 * 291.34407 * 17 16 14 27 27 C 1.55331 * 116.23914 * 89.35401 * 26 17 16 28 28 C 1.55188 * 108.87250 * 319.46272 * 27 26 17 29 29 O 1.39644 * 110.56867 * 322.14878 * 28 27 26 30 30 H 1.08996 * 109.46894 * 299.99526 * 1 2 3 31 31 H 1.08996 * 109.47145 * 59.99826 * 1 2 3 32 32 H 1.09002 * 109.46574 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.46915 * 240.00149 * 2 1 3 34 34 H 1.08998 * 109.47275 * 120.00699 * 2 1 3 35 35 H 1.08996 * 109.46922 * 60.00491 * 3 2 1 36 36 H 1.08996 * 109.47325 * 300.00063 * 3 2 1 37 37 H 1.08997 * 110.41551 * 82.18209 * 5 4 3 38 38 H 1.09001 * 110.51557 * 319.78477 * 5 4 3 39 39 H 1.09004 * 110.31831 * 264.95421 * 6 5 4 40 40 H 1.09000 * 110.40720 * 142.79590 * 6 5 4 41 41 H 1.08995 * 110.32769 * 241.10417 * 7 6 5 42 42 H 1.09003 * 110.40928 * 118.93584 * 7 6 5 43 43 H 0.97004 * 119.99565 * 0.02562 * 12 10 8 44 44 H 1.09000 * 109.46776 * 59.99982 * 13 12 10 45 45 H 1.08999 * 109.46831 * 300.00685 * 13 12 10 46 46 H 1.08998 * 109.99538 * 58.59777 * 16 14 13 47 47 H 1.09009 * 109.99259 * 297.23631 * 16 14 13 48 48 H 0.96998 * 119.99859 * 179.97438 * 21 20 18 49 49 H 1.09003 * 108.12134 * 211.11575 * 26 17 16 50 50 H 1.09000 * 108.12568 * 327.59154 * 26 17 16 51 51 H 1.08999 * 109.56588 * 79.27848 * 27 26 17 52 52 H 1.08993 * 109.56799 * 199.64645 * 27 26 17 53 53 H 1.08995 * 109.25541 * 201.86123 * 28 27 26 54 54 H 1.09002 * 109.25287 * 82.42399 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4426 -0.0006 5 6 4.0419 1.0735 1.3361 6 6 5.4839 1.6251 1.3458 7 6 5.4834 2.7664 0.3080 8 6 4.0413 2.8084 -0.2414 9 1 3.4505 3.5490 0.2977 10 6 4.0497 3.1168 -1.7165 11 8 3.5972 2.3151 -2.5061 12 7 4.5599 4.2834 -2.1583 13 6 4.5685 4.5829 -3.5922 14 6 5.1978 5.9583 -3.8222 15 1 6.2303 5.9280 -3.4742 16 6 5.1964 6.2398 -5.2641 17 7 5.7728 7.6149 -5.4379 18 6 6.9957 7.7894 -6.0290 19 1 7.2368 8.7289 -6.5039 20 6 7.9254 6.7586 -6.0177 21 7 7.8113 5.7790 -5.1462 22 14 9.3385 6.7621 -7.2395 23 1 10.1572 7.9859 -7.0460 24 1 10.1839 5.5608 -7.0219 25 1 8.7974 6.7421 -8.6223 26 6 5.0180 8.7426 -4.9734 27 6 5.2611 9.1721 -3.5006 28 6 5.3827 7.8998 -2.6202 29 8 4.4860 6.9190 -3.0490 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3632 -1.0277 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 1.6767 1.9563 0.8900 36 1 1.6767 1.9563 -0.8899 37 1 4.0485 -0.0097 1.4570 38 1 3.4513 1.5396 2.1248 39 1 6.1887 0.8471 1.0526 40 1 5.7364 2.0114 2.3333 41 1 6.1881 2.5487 -0.4945 42 1 5.7346 3.7139 0.7849 43 1 4.9221 4.9244 -1.5267 44 1 3.5459 4.5831 -3.9695 45 1 5.1496 3.8253 -4.1181 46 1 4.1768 6.2119 -5.6483 47 1 5.8128 5.5085 -5.7872 48 1 8.4607 5.0585 -5.1386 49 1 5.2470 9.5921 -5.6167 50 1 3.9588 8.5126 -5.0892 51 1 6.1830 9.7500 -3.4363 52 1 4.4236 9.7773 -3.1538 53 1 5.1650 8.1577 -1.5838 54 1 6.3991 7.5119 -2.6877 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073627272.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:51:42 Heat of formation + Delta-G solvation = -69.189153 kcal Electronic energy + Delta-G solvation = -31515.562183 eV Core-core repulsion = 27487.318319 eV Total energy + Delta-G solvation = -4028.243863 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.34901 -40.55591 -38.99277 -36.79415 -35.93777 -35.44675 -33.84224 -32.99119 -31.72799 -30.86082 -29.88077 -27.06936 -27.04426 -26.42551 -24.49455 -23.19399 -22.63716 -22.38621 -21.35739 -21.32241 -20.85573 -18.95818 -18.32949 -17.71994 -17.25243 -16.95622 -16.59502 -16.38602 -16.10785 -15.97771 -15.75692 -15.54026 -15.10372 -14.99862 -14.76871 -14.38173 -14.21515 -14.00417 -13.94977 -13.79764 -13.57782 -13.47985 -13.27767 -12.97800 -12.74362 -12.60880 -12.54645 -12.50569 -12.31196 -12.24567 -12.15107 -11.92795 -11.82274 -11.77557 -11.55972 -11.46244 -11.37637 -11.18788 -10.77389 -10.55473 -10.26808 -10.02835 -9.43570 -8.71815 -7.89338 -5.30103 1.47905 1.52063 1.56766 1.69056 2.11746 2.52252 3.04097 3.12063 3.27854 3.50285 3.58960 3.59961 3.94388 4.01383 4.12832 4.17824 4.20053 4.26589 4.29881 4.37651 4.41187 4.47214 4.54162 4.55721 4.58555 4.71795 4.73108 4.74922 4.79503 4.79897 4.88338 4.91107 4.97999 5.03866 5.07825 5.12717 5.16886 5.18536 5.19251 5.23178 5.32737 5.34733 5.38535 5.40402 5.45638 5.52819 5.68117 5.81822 6.08157 6.36331 6.51940 6.64548 7.10667 7.32353 7.83113 8.36258 9.16326 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.015010 B = 0.002724 C = 0.002611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1865.000245 B =10277.498060 C =10722.609368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.110 4.110 3 C 0.050 3.950 4 N -0.513 5.513 5 C 0.033 3.967 6 C -0.117 4.117 7 C -0.115 4.115 8 C 0.049 3.951 9 H 0.095 0.905 10 C 0.514 3.486 11 O -0.572 6.572 12 N -0.707 5.707 13 C 0.136 3.864 14 C 0.083 3.917 15 H 0.085 0.915 16 C 0.145 3.855 17 N -0.601 5.601 18 C -0.265 4.265 19 H 0.063 0.937 20 C -0.036 4.036 21 N -0.916 5.916 22 Si 0.959 3.041 23 H -0.280 1.280 24 H -0.294 1.294 25 H -0.287 1.287 26 C 0.154 3.846 27 C -0.165 4.165 28 C 0.068 3.932 29 O -0.367 6.367 30 H 0.064 0.936 31 H 0.044 0.956 32 H 0.065 0.935 33 H 0.048 0.952 34 H 0.072 0.928 35 H 0.051 0.949 36 H 0.049 0.951 37 H 0.088 0.912 38 H 0.062 0.938 39 H 0.070 0.930 40 H 0.097 0.903 41 H 0.057 0.943 42 H 0.101 0.899 43 H 0.409 0.591 44 H 0.053 0.947 45 H 0.057 0.943 46 H 0.022 0.978 47 H 0.077 0.923 48 H 0.251 0.749 49 H 0.030 0.970 50 H 0.033 0.967 51 H 0.054 0.946 52 H 0.078 0.922 53 H 0.089 0.911 54 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.429 -5.697 17.626 20.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.148 4.148 3 C -0.078 4.078 4 N -0.238 5.238 5 C -0.094 4.094 6 C -0.155 4.155 7 C -0.153 4.153 8 C -0.063 4.063 9 H 0.112 0.888 10 C 0.301 3.699 11 O -0.451 6.451 12 N -0.359 5.359 13 C 0.011 3.989 14 C 0.024 3.976 15 H 0.103 0.897 16 C 0.020 3.980 17 N -0.323 5.323 18 C -0.394 4.394 19 H 0.081 0.919 20 C -0.232 4.232 21 N -0.562 5.562 22 Si 0.788 3.212 23 H -0.206 1.206 24 H -0.221 1.221 25 H -0.213 1.213 26 C 0.026 3.974 27 C -0.206 4.206 28 C -0.010 4.010 29 O -0.285 6.285 30 H 0.083 0.917 31 H 0.064 0.936 32 H 0.084 0.916 33 H 0.067 0.933 34 H 0.091 0.909 35 H 0.069 0.931 36 H 0.068 0.932 37 H 0.107 0.893 38 H 0.080 0.920 39 H 0.089 0.911 40 H 0.116 0.884 41 H 0.075 0.925 42 H 0.120 0.880 43 H 0.245 0.755 44 H 0.071 0.929 45 H 0.075 0.925 46 H 0.040 0.960 47 H 0.095 0.905 48 H 0.060 0.940 49 H 0.049 0.951 50 H 0.052 0.948 51 H 0.073 0.927 52 H 0.097 0.903 53 H 0.106 0.894 54 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -8.697 -6.773 16.657 19.974 hybrid contribution 1.028 0.883 -0.497 1.443 sum -7.669 -5.890 16.160 18.832 Atomic orbital electron populations 1.21715 0.94594 1.02366 1.01836 1.21378 0.96144 0.95261 1.02031 1.22288 0.86913 0.98389 1.00227 1.65024 1.08880 1.20880 1.28969 1.23243 0.95490 1.01947 0.88683 1.22299 0.96335 0.97297 0.99586 1.22317 0.92531 1.01410 0.99051 1.22587 0.99425 0.93164 0.91092 0.88751 1.20959 0.76762 0.80621 0.91555 1.90656 1.47628 1.48434 1.58377 1.45771 1.62226 1.19519 1.08358 1.21303 1.00006 0.95790 0.81799 1.21707 0.95952 0.85814 0.94131 0.89727 1.20660 0.94629 0.88080 0.94649 1.44213 1.18551 1.01520 1.68003 1.19364 0.91279 1.00584 1.28209 0.91902 1.25477 0.99430 0.98788 0.99534 1.69984 1.37737 1.13609 1.34845 0.85485 0.79475 0.76660 0.79582 1.20564 1.22054 1.21316 1.20492 0.94157 0.89692 0.93092 1.23492 1.01185 0.97818 0.98068 1.22408 0.92407 0.88992 0.97169 1.87506 1.34685 1.37192 1.69117 0.91731 0.93638 0.91564 0.93306 0.90928 0.93132 0.93226 0.89329 0.92014 0.91148 0.88419 0.92459 0.88022 0.75535 0.92862 0.92518 0.95997 0.90475 0.93990 0.95118 0.94829 0.92722 0.90308 0.89354 0.94519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.39 9.91 71.98 0.71 -1.67 16 2 C -0.11 -2.17 6.05 30.60 0.19 -1.99 16 3 C 0.05 1.12 4.62 86.30 0.40 1.52 16 4 N -0.51 -12.24 4.62 -861.04 -3.98 -16.22 16 5 C 0.03 0.55 5.91 86.45 0.51 1.06 16 6 C -0.12 -1.76 7.00 31.49 0.22 -1.54 16 7 C -0.11 -2.20 6.47 31.49 0.20 -1.99 16 8 C 0.05 1.16 2.67 44.32 0.12 1.28 16 9 H 0.09 1.86 8.00 -2.39 -0.02 1.84 16 10 C 0.51 16.84 6.84 87.66 0.60 17.44 16 11 O -0.57 -23.73 15.76 -3.04 -0.05 -23.78 16 12 N -0.71 -22.63 5.34 -463.08 -2.47 -25.10 16 13 C 0.14 5.21 5.27 86.38 0.45 5.67 16 14 C 0.08 3.38 2.00 28.70 0.06 3.44 16 15 H 0.09 3.90 5.25 -2.39 -0.01 3.89 16 16 C 0.14 6.70 4.71 83.79 0.39 7.09 16 17 N -0.60 -28.97 2.61 -705.97 -1.84 -30.82 16 18 C -0.26 -13.87 9.62 84.04 0.81 -13.06 16 19 H 0.06 3.29 7.88 -2.91 -0.02 3.27 16 20 C -0.04 -1.87 4.92 84.86 0.42 -1.45 16 21 N -0.92 -48.61 9.57 21.65 0.21 -48.40 16 22 Si 0.96 43.29 29.60 68.60 2.03 45.32 16 23 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 24 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 25 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 26 C 0.15 6.34 5.32 87.75 0.47 6.80 16 27 C -0.16 -5.73 6.75 32.15 0.22 -5.51 16 28 C 0.07 2.35 6.38 72.73 0.46 2.81 16 29 O -0.37 -13.63 9.34 -137.23 -1.28 -14.91 16 30 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.07 1.20 7.47 -2.39 -0.02 1.18 16 35 H 0.05 0.92 7.77 -2.39 -0.02 0.90 16 36 H 0.05 1.40 7.29 -2.39 -0.02 1.38 16 37 H 0.09 1.36 7.85 -2.39 -0.02 1.34 16 38 H 0.06 0.80 7.76 -2.39 -0.02 0.79 16 39 H 0.07 1.13 8.14 -2.38 -0.02 1.11 16 40 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 41 H 0.06 1.37 7.85 -2.39 -0.02 1.35 16 42 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 43 H 0.41 11.30 8.17 -92.71 -0.76 10.54 16 44 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 45 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 46 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 47 H 0.08 3.99 6.03 -2.38 -0.01 3.98 16 48 H 0.25 13.21 8.31 -92.71 -0.77 12.44 16 49 H 0.03 1.25 7.96 -2.39 -0.02 1.24 16 50 H 0.03 1.35 7.99 -2.39 -0.02 1.33 16 51 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 52 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 53 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 54 H 0.04 1.48 6.66 -2.39 -0.02 1.47 16 Total: -1.00 -63.39 410.67 -1.04 -64.43 By element: Atomic # 1 Polarization: 29.49 SS G_CDS: 0.11 Total: 29.59 kcal Atomic # 6 Polarization: 13.65 SS G_CDS: 6.23 Total: 19.88 kcal Atomic # 7 Polarization: -112.45 SS G_CDS: -8.08 Total: -120.54 kcal Atomic # 8 Polarization: -37.37 SS G_CDS: -1.33 Total: -38.70 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Total: -63.39 -1.04 -64.43 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073627272.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.754 kcal (2) G-P(sol) polarization free energy of solvation -63.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds