Wall clock time and date at job start Sat Apr 11 2020 05:52:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42902 * 114.00359 * 2 1 4 4 H 1.09006 * 110.63960 * 26.85230 * 3 2 1 5 5 C 1.54323 * 110.71733 * 263.52371 * 3 2 1 6 6 N 1.47027 * 107.26900 * 219.44381 * 5 3 2 7 7 C 1.36931 * 125.65145 * 178.92172 * 6 5 3 8 8 H 1.07995 * 120.00583 * 180.02562 * 7 6 5 9 9 C 1.38813 * 119.99925 * 0.02562 * 7 6 5 10 10 N 1.31629 * 120.00018 * 359.97438 * 9 7 6 11 11 Si 1.86796 * 120.00437 * 180.02562 * 9 7 6 12 12 H 1.48503 * 109.46872 * 359.97438 * 11 9 7 13 13 H 1.48501 * 109.47624 * 119.99555 * 11 9 7 14 14 H 1.48502 * 109.47088 * 240.00103 * 11 9 7 15 15 C 1.47423 * 108.70102 * 358.93767 * 6 5 3 16 16 C 1.54913 * 104.83620 * 24.13150 * 15 6 5 17 17 H 1.08997 * 111.00216 * 81.05883 * 16 15 6 18 18 N 1.46498 * 111.00419 * 204.91827 * 16 15 6 19 19 C 1.34775 * 119.99715 * 267.18898 * 18 16 15 20 20 O 1.21279 * 120.00238 * 0.02562 * 19 18 16 21 21 C 1.50701 * 119.99824 * 179.97438 * 19 18 16 22 22 C 1.53004 * 109.46799 * 174.39716 * 21 19 18 23 23 H 1.09000 * 110.36759 * 56.53849 * 22 21 19 24 24 C 1.54377 * 110.41469 * 294.18524 * 22 21 19 25 25 C 1.54261 * 105.05995 * 217.37252 * 24 22 21 26 26 C 1.54376 * 105.06107 * 359.97438 * 25 24 22 27 27 N 1.48570 * 110.40954 * 178.88397 * 22 21 19 28 28 C 1.46894 * 110.99795 * 277.82217 * 27 22 21 29 29 C 1.52998 * 109.46934 * 174.31249 * 28 27 22 30 30 C 1.53007 * 109.47325 * 294.30789 * 28 27 22 31 31 H 1.08994 * 109.47176 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47374 * 300.00627 * 1 2 3 33 33 H 1.08999 * 109.46927 * 60.00042 * 1 2 3 34 34 H 1.08997 * 109.88297 * 338.85575 * 5 3 2 35 35 H 1.08993 * 109.88685 * 100.02472 * 5 3 2 36 36 H 0.96996 * 120.00068 * 179.97438 * 10 9 7 37 37 H 1.09002 * 110.36843 * 265.29505 * 15 6 5 38 38 H 1.09000 * 110.36565 * 142.97189 * 15 6 5 39 39 H 0.96999 * 120.00329 * 87.19612 * 18 16 15 40 40 H 1.08992 * 109.47675 * 294.39739 * 21 19 18 41 41 H 1.09004 * 109.46954 * 54.40296 * 21 19 18 42 42 H 1.09002 * 110.32363 * 336.26476 * 24 22 21 43 43 H 1.08991 * 110.32540 * 98.47184 * 24 22 21 44 44 H 1.09000 * 110.32695 * 118.89683 * 25 24 22 45 45 H 1.09004 * 110.32109 * 241.09956 * 25 24 22 46 46 H 1.09012 * 110.41071 * 142.63338 * 26 25 24 47 47 H 1.08991 * 110.41724 * 265.07694 * 26 25 24 48 48 H 1.09005 * 109.47702 * 54.31104 * 28 27 22 49 49 H 1.08994 * 109.47337 * 59.99870 * 29 28 27 50 50 H 1.09000 * 109.47157 * 179.97438 * 29 28 27 51 51 H 1.09006 * 109.47142 * 299.99624 * 29 28 27 52 52 H 1.09007 * 109.46578 * 52.29372 * 30 28 27 53 53 H 1.08997 * 109.47086 * 172.29478 * 30 28 27 54 54 H 1.09000 * 109.46873 * 292.29871 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3352 2.0267 0.4608 5 6 2.3811 1.7379 -1.4342 6 7 3.6687 2.4437 -1.3581 7 6 4.3547 2.9692 -2.4203 8 1 5.2973 3.4712 -2.2594 9 6 3.8387 2.8567 -3.7040 10 7 2.6901 2.2445 -3.9004 11 14 4.7749 3.5729 -5.1532 12 1 6.0288 4.2042 -4.6691 13 1 5.1044 2.4895 -6.1139 14 1 3.9354 4.5949 -5.8284 15 6 4.0989 2.4917 0.0511 16 6 3.3817 1.2957 0.7257 17 1 3.9158 0.3641 0.5390 18 7 3.2168 1.5252 2.1631 19 6 4.1462 1.0739 3.0285 20 8 5.1193 0.4782 2.6173 21 6 3.9769 1.3105 4.5072 22 6 5.0861 0.5836 5.2702 23 1 6.0649 0.9087 4.9178 24 6 4.9368 -0.9447 5.1110 25 6 5.3328 -1.5311 6.4818 26 6 5.6886 -0.3078 7.3537 27 7 4.9547 0.8251 6.7303 28 6 5.5520 2.1133 7.1065 29 6 5.2737 2.3920 8.5850 30 6 7.0632 2.0625 6.8728 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 2.4769 0.8600 -2.0731 35 1 1.6155 2.4051 -1.8299 36 1 2.3293 2.1662 -4.7973 37 1 3.7872 3.4294 0.5112 38 1 5.1802 2.3744 0.1218 39 1 2.4386 2.0019 2.4921 40 1 4.0345 2.3792 4.7132 41 1 3.0066 0.9305 4.8272 42 1 3.9045 -1.2016 4.8734 43 1 5.6075 -1.3117 4.3342 44 1 4.4949 -2.0757 6.9170 45 1 6.1979 -2.1860 6.3777 46 1 5.3518 -0.4609 8.3791 47 1 6.7624 -0.1228 7.3291 48 1 5.1169 2.9069 6.4990 49 1 5.7088 1.5985 9.1924 50 1 5.7173 3.3476 8.8643 51 1 4.1971 2.4283 8.7515 52 1 7.2623 1.7301 5.8539 53 1 7.4873 3.0557 7.0205 54 1 7.5166 1.3653 7.5775 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001081799368.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:02 Heat of formation + Delta-G solvation = -69.953990 kcal Electronic energy + Delta-G solvation = -31041.731310 eV Core-core repulsion = 27013.454281 eV Total energy + Delta-G solvation = -4028.277029 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.35433 -40.41447 -39.40233 -37.50850 -35.62796 -35.29440 -33.75294 -32.62188 -30.56303 -29.94341 -28.99562 -28.13166 -27.55743 -27.14750 -25.85198 -23.41738 -22.54956 -22.15494 -21.69583 -20.96810 -20.07309 -19.13063 -18.24726 -17.79616 -17.32979 -17.16010 -16.70335 -16.23955 -15.98097 -15.85216 -15.73030 -15.48009 -15.24920 -15.04361 -14.77271 -14.55865 -14.21272 -14.13804 -13.97992 -13.62525 -13.56196 -13.28559 -13.10180 -12.97725 -12.80331 -12.75064 -12.59129 -12.47021 -12.30570 -12.27996 -12.10944 -12.04772 -12.03396 -11.88518 -11.71008 -11.63601 -11.53637 -11.22847 -10.91522 -10.79507 -10.56267 -10.04584 -9.36369 -8.97998 -7.88913 -5.27145 1.44431 1.46215 1.56497 1.68745 2.04587 2.45429 2.77589 3.04445 3.30643 3.53761 3.64098 3.68013 3.80598 3.92653 3.95807 4.01595 4.10634 4.13969 4.17042 4.33425 4.37389 4.41550 4.45198 4.47888 4.50497 4.60393 4.65151 4.66067 4.73294 4.78903 4.81696 4.87696 4.88862 4.94422 4.99718 5.02888 5.04435 5.10761 5.15432 5.23058 5.25340 5.33360 5.37408 5.39122 5.46415 5.49995 5.64849 5.95010 6.12329 6.16319 6.32121 6.59578 7.03407 7.31622 7.68472 8.31025 9.20775 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.015576 B = 0.002499 C = 0.002297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1797.229015 B =11200.570187 C =12186.204374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.398 6.398 3 C 0.077 3.923 4 H 0.097 0.903 5 C 0.175 3.825 6 N -0.622 5.622 7 C -0.245 4.245 8 H 0.083 0.917 9 C -0.064 4.064 10 N -0.949 5.949 11 Si 0.982 3.018 12 H -0.266 1.266 13 H -0.293 1.293 14 H -0.287 1.287 15 C 0.132 3.868 16 C 0.151 3.849 17 H 0.073 0.927 18 N -0.703 5.703 19 C 0.513 3.487 20 O -0.580 6.580 21 C -0.112 4.112 22 C 0.076 3.924 23 H 0.047 0.953 24 C -0.116 4.116 25 C -0.122 4.122 26 C 0.027 3.973 27 N -0.499 5.499 28 C 0.059 3.941 29 C -0.133 4.133 30 C -0.188 4.188 31 H 0.099 0.901 32 H 0.066 0.934 33 H 0.034 0.966 34 H 0.016 0.984 35 H 0.022 0.978 36 H 0.249 0.751 37 H 0.044 0.956 38 H 0.033 0.967 39 H 0.416 0.584 40 H 0.113 0.887 41 H 0.119 0.881 42 H 0.065 0.935 43 H 0.050 0.950 44 H 0.079 0.921 45 H 0.069 0.931 46 H 0.093 0.907 47 H 0.053 0.947 48 H 0.083 0.917 49 H 0.055 0.945 50 H 0.067 0.933 51 H 0.062 0.938 52 H 0.042 0.958 53 H 0.069 0.931 54 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.138 -1.722 27.213 27.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.317 6.317 3 C 0.017 3.983 4 H 0.115 0.885 5 C 0.049 3.951 6 N -0.350 5.350 7 C -0.374 4.374 8 H 0.101 0.899 9 C -0.257 4.257 10 N -0.598 5.598 11 Si 0.809 3.191 12 H -0.191 1.191 13 H -0.220 1.220 14 H -0.214 1.214 15 C 0.005 3.995 16 C 0.044 3.956 17 H 0.091 0.909 18 N -0.355 5.355 19 C 0.301 3.699 20 O -0.459 6.459 21 C -0.152 4.152 22 C -0.033 4.033 23 H 0.065 0.935 24 C -0.154 4.154 25 C -0.160 4.160 26 C -0.100 4.100 27 N -0.223 5.223 28 C -0.050 4.050 29 C -0.191 4.191 30 C -0.246 4.246 31 H 0.118 0.882 32 H 0.084 0.916 33 H 0.053 0.947 34 H 0.034 0.966 35 H 0.040 0.960 36 H 0.058 0.942 37 H 0.061 0.939 38 H 0.052 0.948 39 H 0.253 0.747 40 H 0.131 0.869 41 H 0.138 0.862 42 H 0.083 0.917 43 H 0.069 0.931 44 H 0.097 0.903 45 H 0.088 0.912 46 H 0.111 0.889 47 H 0.071 0.929 48 H 0.101 0.899 49 H 0.074 0.926 50 H 0.086 0.914 51 H 0.081 0.919 52 H 0.061 0.939 53 H 0.088 0.912 54 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.926 -2.263 26.922 27.033 hybrid contribution 0.842 0.595 -1.792 2.068 sum -0.084 -1.668 25.130 25.186 Atomic orbital electron populations 1.22989 0.79323 1.03864 1.00776 1.87896 1.21775 1.27092 1.94925 1.23508 0.93751 0.85225 0.95789 0.88481 1.21285 0.87151 0.94625 0.92060 1.44540 1.22011 1.66376 1.02086 1.19482 1.02636 1.29415 0.85875 0.89932 1.25691 0.98480 1.01479 1.00020 1.70174 1.20580 1.48403 1.20649 0.84969 0.77979 0.77244 0.78873 1.19052 1.21983 1.21364 1.21932 0.97145 0.95864 0.84567 1.21781 0.95413 0.98183 0.80246 0.90929 1.45714 1.26097 1.58750 1.04949 1.21267 0.81656 0.77211 0.89790 1.90703 1.31714 1.42798 1.80734 1.21520 1.02174 1.03865 0.87688 1.22271 0.96885 0.95361 0.88734 0.93459 1.22248 1.01560 0.94180 0.97441 1.22310 1.01852 0.97462 0.94404 1.23242 0.97294 0.90162 0.99308 1.65552 1.50459 1.02109 1.04179 1.21924 0.92502 0.92056 0.98469 1.21723 1.02341 1.01704 0.93337 1.22490 0.97915 1.02987 1.01231 0.88217 0.91587 0.94690 0.96615 0.95976 0.94200 0.93870 0.94847 0.74661 0.86901 0.86241 0.91651 0.93116 0.90268 0.91225 0.88897 0.92922 0.89899 0.92580 0.91432 0.91874 0.93875 0.91216 0.91590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.69 10.85 113.37 1.23 1.92 16 2 O -0.40 -14.49 10.43 -148.98 -1.55 -16.05 16 3 C 0.08 2.86 3.09 31.78 0.10 2.95 16 4 H 0.10 2.96 7.68 -2.38 -0.02 2.94 16 5 C 0.17 8.82 5.15 86.73 0.45 9.26 16 6 N -0.62 -33.09 3.39 -691.99 -2.35 -35.44 16 7 C -0.25 -14.16 10.28 84.03 0.86 -13.30 16 8 H 0.08 4.59 7.83 -2.91 -0.02 4.57 16 9 C -0.06 -3.69 5.49 84.86 0.47 -3.22 16 10 N -0.95 -57.81 10.31 21.65 0.22 -57.58 16 11 Si 0.98 46.57 29.55 68.60 2.03 48.60 16 12 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 13 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 14 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 15 C 0.13 5.67 6.93 86.86 0.60 6.27 16 16 C 0.15 5.65 3.15 46.38 0.15 5.79 16 17 H 0.07 3.25 7.54 -2.39 -0.02 3.24 16 18 N -0.70 -18.95 5.20 -435.97 -2.27 -21.22 16 19 C 0.51 14.30 7.55 87.66 0.66 14.96 16 20 O -0.58 -21.73 14.59 -3.03 -0.04 -21.77 16 21 C -0.11 -2.11 5.33 29.85 0.16 -1.95 16 22 C 0.08 1.57 1.77 45.06 0.08 1.65 16 23 H 0.05 1.19 5.70 -2.39 -0.01 1.18 16 24 C -0.12 -2.55 5.61 31.49 0.18 -2.37 16 25 C -0.12 -2.02 7.00 31.49 0.22 -1.80 16 26 C 0.03 0.41 5.52 86.42 0.48 0.89 16 27 N -0.50 -8.17 5.04 -831.34 -4.19 -12.36 16 28 C 0.06 0.84 2.91 44.92 0.13 0.97 16 29 C -0.13 -1.46 9.25 71.98 0.67 -0.80 16 30 C -0.19 -2.80 8.22 71.98 0.59 -2.21 16 31 H 0.10 2.21 8.14 -2.39 -0.02 2.19 16 32 H 0.07 1.32 8.11 -2.39 -0.02 1.30 16 33 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.02 0.92 7.29 -2.39 -0.02 0.90 16 35 H 0.02 1.21 7.51 -2.39 -0.02 1.19 16 36 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 37 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 38 H 0.03 1.53 8.14 -2.39 -0.02 1.51 16 39 H 0.42 7.96 8.57 -92.71 -0.79 7.16 16 40 H 0.11 1.68 7.29 -2.39 -0.02 1.67 16 41 H 0.12 1.79 8.07 -2.39 -0.02 1.77 16 42 H 0.06 1.44 7.81 -2.39 -0.02 1.42 16 43 H 0.05 1.38 7.70 -2.39 -0.02 1.36 16 44 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 45 H 0.07 1.10 8.14 -2.38 -0.02 1.08 16 46 H 0.09 1.15 7.78 -2.38 -0.02 1.13 16 47 H 0.05 0.80 5.42 -2.39 -0.01 0.79 16 48 H 0.08 1.18 7.23 -2.38 -0.02 1.16 16 49 H 0.06 0.59 7.28 -2.39 -0.02 0.57 16 50 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 51 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 52 H 0.04 0.82 6.02 -2.38 -0.01 0.80 16 53 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 54 H 0.07 0.90 6.38 -2.39 -0.02 0.89 16 Total: -1.00 -74.22 410.73 -1.06 -75.28 By element: Atomic # 1 Polarization: 21.43 SS G_CDS: 0.08 Total: 21.52 kcal Atomic # 6 Polarization: 12.01 SS G_CDS: 7.01 Total: 19.03 kcal Atomic # 7 Polarization: -118.02 SS G_CDS: -8.58 Total: -126.60 kcal Atomic # 8 Polarization: -36.22 SS G_CDS: -1.60 Total: -37.82 kcal Atomic # 14 Polarization: 46.57 SS G_CDS: 2.03 Total: 48.60 kcal Total: -74.22 -1.06 -75.28 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001081799368.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.326 kcal (2) G-P(sol) polarization free energy of solvation -74.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds