Wall clock time and date at job start Sat Apr 11 2020 05:52:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42902 * 113.99482 * 2 1 4 4 H 1.08999 * 110.91721 * 26.10002 * 3 2 1 5 5 C 1.55120 * 111.16267 * 262.17149 * 3 2 1 6 6 N 1.47428 * 104.94112 * 205.13121 * 5 3 2 7 7 C 1.36942 * 125.64797 * 204.03560 * 6 5 3 8 8 H 1.08000 * 119.99675 * 157.41648 * 7 6 5 9 9 C 1.38811 * 119.99875 * 337.41649 * 7 6 5 10 10 N 1.31620 * 119.99543 * 159.88641 * 9 7 6 11 11 Si 1.86799 * 120.00262 * 339.89107 * 9 7 6 12 12 H 1.48502 * 109.47224 * 85.02330 * 11 9 7 13 13 H 1.48497 * 109.46892 * 205.02467 * 11 9 7 14 14 H 1.48499 * 109.46895 * 325.02193 * 11 9 7 15 15 C 1.47022 * 108.70472 * 24.00597 * 6 5 3 16 16 C 1.54329 * 107.26967 * 358.94026 * 15 6 5 17 17 H 1.08991 * 110.72095 * 96.34660 * 16 15 6 18 18 N 1.46506 * 110.71599 * 219.44698 * 16 15 6 19 19 C 1.34773 * 119.99856 * 271.14960 * 18 16 15 20 20 O 1.21282 * 120.00026 * 0.02562 * 19 18 16 21 21 C 1.50698 * 119.99975 * 179.72801 * 19 18 16 22 22 H 1.09001 * 109.46453 * 31.59388 * 21 19 18 23 23 C 1.53042 * 109.45975 * 271.62305 * 21 19 18 24 24 C 1.53130 * 109.27410 * 180.79362 * 23 21 19 25 25 C 1.53116 * 109.15112 * 57.66925 * 24 23 21 26 26 C 1.53039 * 109.28087 * 302.33715 * 25 24 23 27 27 N 1.46837 * 109.46579 * 151.57993 * 21 19 18 28 28 C 1.46909 * 111.00027 * 305.85665 * 27 21 19 29 29 C 1.52992 * 109.47539 * 172.03281 * 28 27 21 30 30 C 1.52995 * 109.46745 * 292.03491 * 28 27 21 31 31 H 1.09008 * 109.46355 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.47427 * 299.99507 * 1 2 3 33 33 H 1.08997 * 109.47477 * 60.00327 * 1 2 3 34 34 H 1.08999 * 110.42093 * 86.20771 * 5 3 2 35 35 H 1.09003 * 110.30023 * 323.99653 * 5 3 2 36 36 H 0.97003 * 120.00207 * 179.97438 * 10 9 7 37 37 H 1.08996 * 109.88090 * 239.52439 * 15 6 5 38 38 H 1.08995 * 109.88736 * 118.35273 * 15 6 5 39 39 H 0.97004 * 119.99799 * 91.16123 * 18 16 15 40 40 H 1.08996 * 109.50310 * 300.73845 * 23 21 19 41 41 H 1.08994 * 109.50477 * 60.86525 * 23 21 19 42 42 H 1.08995 * 109.53264 * 297.76100 * 24 23 21 43 43 H 1.08995 * 109.56884 * 177.59965 * 24 23 21 44 44 H 1.09004 * 109.50210 * 182.39788 * 25 24 23 45 45 H 1.09004 * 109.53910 * 62.30376 * 25 24 23 46 46 H 1.09000 * 109.46139 * 299.16731 * 26 25 24 47 47 H 1.09001 * 109.46388 * 179.19706 * 26 25 24 48 48 H 1.09001 * 109.46835 * 52.03132 * 28 27 21 49 49 H 1.08999 * 109.46949 * 59.99577 * 29 28 27 50 50 H 1.09000 * 109.47667 * 179.97438 * 29 28 27 51 51 H 1.09009 * 109.47275 * 300.00315 * 29 28 27 52 52 H 1.09000 * 109.47199 * 59.99814 * 30 28 27 53 53 H 1.09002 * 109.47098 * 179.97438 * 30 28 27 54 54 H 1.08998 * 109.47595 * 299.99689 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3331 2.0329 0.4479 5 6 2.4179 1.7370 -1.4331 6 7 3.4965 2.7235 -1.2406 7 6 3.8514 3.7019 -2.1307 8 1 4.3748 4.5814 -1.7860 9 6 3.5384 3.5630 -3.4759 10 7 3.5069 4.6220 -4.2569 11 14 3.1617 1.8734 -4.1778 12 1 1.7281 1.5544 -3.9581 13 1 3.4530 1.8661 -5.6339 14 1 4.0047 0.8564 -3.4992 15 6 4.1274 2.4835 0.0654 16 6 3.3824 1.3034 0.7242 17 1 3.9105 0.3666 0.5469 18 7 3.2108 1.5358 2.1605 19 6 4.1627 1.1352 3.0264 20 8 5.1615 0.5826 2.6166 21 6 3.9890 1.3797 4.5032 22 1 2.9291 1.3448 4.7550 23 6 4.5531 2.7564 4.8619 24 6 4.3924 2.9922 6.3663 25 6 5.1069 1.8734 7.1293 26 6 4.5270 0.5222 6.7049 27 7 4.7057 0.3441 5.2583 28 6 4.2862 -0.9995 4.8376 29 6 5.1878 -2.0451 5.4966 30 6 2.8355 -1.2369 5.2617 31 1 -0.3632 -1.0278 -0.0005 32 1 -0.3634 0.5137 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 1.5728 2.1945 -1.9475 35 1 2.7847 0.8790 -1.9964 36 1 3.2885 4.5251 -5.1970 37 1 4.0382 3.3728 0.6892 38 1 5.1781 2.2282 -0.0717 39 1 2.4120 1.9779 2.4882 40 1 5.6098 2.7967 4.5979 41 1 4.0106 3.5262 4.3131 42 1 3.3335 2.9905 6.6244 43 1 4.8311 3.9534 6.6341 44 1 4.9602 2.0121 8.2004 45 1 6.1726 1.8997 6.9016 46 1 3.4645 0.4911 6.9462 47 1 5.0434 -0.2776 7.2358 48 1 4.3660 -1.0822 3.7536 49 1 5.1080 -1.9623 6.5805 50 1 4.8763 -3.0420 5.1848 51 1 6.2214 -1.8759 5.1945 52 1 2.1931 -0.4919 4.7921 53 1 2.5240 -2.2336 4.9491 54 1 2.7556 -1.1541 6.3456 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001082198619.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:13 Heat of formation + Delta-G solvation = -69.980363 kcal Electronic energy + Delta-G solvation = -32099.472901 eV Core-core repulsion = 28071.194728 eV Total energy + Delta-G solvation = -4028.278173 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.74966 -40.43036 -39.03773 -37.69300 -36.13070 -35.58725 -34.05397 -32.42723 -31.18832 -30.77986 -29.43592 -28.12868 -27.55087 -26.37578 -25.28741 -24.70445 -22.93713 -22.17442 -21.56828 -21.41802 -20.16898 -19.17732 -18.37520 -18.00256 -17.73082 -17.19506 -16.43740 -16.37545 -16.02443 -15.85049 -15.61350 -15.58178 -15.32486 -15.23231 -14.89324 -14.61595 -14.56555 -14.42614 -14.22373 -13.84980 -13.79678 -13.68338 -13.44862 -13.20256 -12.97348 -12.86672 -12.67846 -12.60755 -12.50419 -12.40861 -12.28918 -12.06797 -11.99184 -11.84341 -11.59419 -11.57553 -11.52880 -11.16183 -10.97200 -10.77722 -10.58105 -10.12031 -9.17046 -9.13252 -8.25183 -5.57392 1.23906 1.35083 1.44053 1.57468 1.90668 2.33671 2.49618 2.88516 3.03322 3.32334 3.39653 3.66060 3.74702 3.83768 3.85217 3.92464 4.03712 4.08378 4.17929 4.21904 4.29555 4.31043 4.33003 4.38590 4.48027 4.53538 4.58420 4.68224 4.68715 4.72528 4.75385 4.80298 4.82045 4.83329 4.83505 4.91224 4.93445 5.00213 5.05977 5.13235 5.20950 5.25773 5.29554 5.37010 5.39051 5.50814 5.59507 6.03365 6.04268 6.13287 6.22319 6.53425 6.65015 7.24127 7.42864 7.97447 8.94356 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.015892 B = 0.003175 C = 0.002906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1761.466758 B = 8816.126205 C = 9634.252043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.392 6.392 3 C 0.091 3.909 4 H 0.108 0.892 5 C 0.091 3.909 6 N -0.618 5.618 7 C -0.239 4.239 8 H 0.064 0.936 9 C -0.024 4.024 10 N -0.949 5.949 11 Si 0.940 3.060 12 H -0.265 1.265 13 H -0.302 1.302 14 H -0.280 1.280 15 C 0.130 3.870 16 C 0.154 3.846 17 H 0.082 0.918 18 N -0.704 5.704 19 C 0.517 3.483 20 O -0.562 6.562 21 C 0.081 3.919 22 H 0.083 0.917 23 C -0.108 4.108 24 C -0.112 4.112 25 C -0.118 4.118 26 C 0.052 3.948 27 N -0.528 5.528 28 C 0.066 3.934 29 C -0.135 4.135 30 C -0.179 4.179 31 H 0.104 0.896 32 H 0.066 0.934 33 H 0.040 0.960 34 H 0.056 0.944 35 H 0.023 0.977 36 H 0.266 0.734 37 H 0.050 0.950 38 H 0.019 0.981 39 H 0.415 0.585 40 H 0.053 0.947 41 H 0.080 0.920 42 H 0.077 0.923 43 H 0.077 0.923 44 H 0.089 0.911 45 H 0.056 0.944 46 H 0.051 0.949 47 H 0.086 0.914 48 H 0.057 0.943 49 H 0.071 0.929 50 H 0.064 0.936 51 H 0.045 0.955 52 H 0.052 0.948 53 H 0.064 0.936 54 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.475 -10.076 27.508 30.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.310 6.310 3 C 0.031 3.969 4 H 0.126 0.874 5 C -0.035 4.035 6 N -0.346 5.346 7 C -0.367 4.367 8 H 0.082 0.918 9 C -0.220 4.220 10 N -0.595 5.595 11 Si 0.769 3.231 12 H -0.190 1.190 13 H -0.230 1.230 14 H -0.206 1.206 15 C 0.004 3.996 16 C 0.047 3.953 17 H 0.100 0.900 18 N -0.357 5.357 19 C 0.303 3.697 20 O -0.439 6.439 21 C -0.030 4.030 22 H 0.101 0.899 23 C -0.147 4.147 24 C -0.150 4.150 25 C -0.156 4.156 26 C -0.075 4.075 27 N -0.253 5.253 28 C -0.042 4.042 29 C -0.192 4.192 30 C -0.238 4.238 31 H 0.122 0.878 32 H 0.085 0.915 33 H 0.059 0.941 34 H 0.074 0.926 35 H 0.040 0.960 36 H 0.075 0.925 37 H 0.068 0.932 38 H 0.037 0.963 39 H 0.252 0.748 40 H 0.072 0.928 41 H 0.099 0.901 42 H 0.096 0.904 43 H 0.095 0.905 44 H 0.107 0.893 45 H 0.075 0.925 46 H 0.069 0.931 47 H 0.104 0.896 48 H 0.076 0.924 49 H 0.090 0.910 50 H 0.083 0.917 51 H 0.064 0.936 52 H 0.071 0.929 53 H 0.083 0.917 54 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -6.148 -10.484 26.935 29.550 hybrid contribution -0.931 -0.203 -1.243 1.566 sum -7.079 -10.686 25.692 28.712 Atomic orbital electron populations 1.23092 0.78882 1.04301 1.01194 1.87900 1.22073 1.26302 1.94776 1.23349 0.93884 0.85680 0.93980 0.87433 1.22425 0.91727 0.92138 0.97170 1.44607 1.35820 1.35915 1.18277 1.18566 1.34626 0.95858 0.87677 0.91787 1.25644 1.00444 0.99842 0.96059 1.69910 1.53422 1.29634 1.06519 0.86032 0.78967 0.81894 0.76195 1.19008 1.23009 1.20603 1.21773 0.95228 0.96051 0.86561 1.21606 0.95417 0.97821 0.80411 0.90029 1.45797 1.23476 1.61358 1.05050 1.21104 0.82219 0.77015 0.89315 1.90707 1.30181 1.42836 1.80166 1.21555 0.98638 0.94732 0.88102 0.89945 1.21580 1.01359 0.93030 0.98686 1.21553 1.01697 0.99296 0.92452 1.21636 1.00093 0.93379 1.00466 1.22280 1.00045 0.98920 0.86259 1.61880 1.57092 1.01138 1.05224 1.21778 0.94096 0.88638 0.99701 1.21756 0.99065 0.97397 1.00994 1.22417 0.96367 1.02434 1.02533 0.87780 0.91548 0.94104 0.92567 0.95971 0.92524 0.93236 0.96255 0.74791 0.92784 0.90099 0.90389 0.90468 0.89290 0.92497 0.93132 0.89552 0.92446 0.90986 0.91723 0.93583 0.92940 0.91717 0.90659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.43 10.85 113.37 1.23 1.66 16 2 O -0.39 -11.70 10.52 -148.98 -1.57 -13.27 16 3 C 0.09 2.91 3.17 32.06 0.10 3.01 16 4 H 0.11 2.82 7.69 -2.39 -0.02 2.80 16 5 C 0.09 3.92 4.47 86.93 0.39 4.31 16 6 N -0.62 -30.42 3.16 -691.56 -2.19 -32.61 16 7 C -0.24 -13.96 10.57 84.03 0.89 -13.08 16 8 H 0.06 4.03 8.06 -2.91 -0.02 4.01 16 9 C -0.02 -1.44 5.45 84.86 0.46 -0.98 16 10 N -0.95 -59.79 13.97 21.65 0.30 -59.49 16 11 Si 0.94 48.09 24.29 68.60 1.67 49.75 16 12 H -0.26 -12.49 6.64 99.48 0.66 -11.83 16 13 H -0.30 -15.41 7.11 99.48 0.71 -14.71 16 14 H -0.28 -14.50 6.63 99.48 0.66 -13.84 16 15 C 0.13 5.44 7.00 86.73 0.61 6.05 16 16 C 0.15 5.26 3.00 46.18 0.14 5.40 16 17 H 0.08 3.22 7.62 -2.39 -0.02 3.21 16 18 N -0.70 -18.14 5.12 -436.91 -2.24 -20.38 16 19 C 0.52 14.54 5.83 87.66 0.51 15.05 16 20 O -0.56 -21.38 14.92 -3.04 -0.05 -21.42 16 21 C 0.08 1.63 1.86 44.19 0.08 1.71 16 22 H 0.08 1.25 6.81 -2.39 -0.02 1.23 16 23 C -0.11 -1.97 5.36 30.65 0.16 -1.80 16 24 C -0.11 -1.39 6.00 30.68 0.18 -1.20 16 25 C -0.12 -1.47 6.09 30.65 0.19 -1.29 16 26 C 0.05 0.72 4.59 86.33 0.40 1.11 16 27 N -0.53 -10.82 4.22 -850.41 -3.59 -14.41 16 28 C 0.07 1.38 2.56 44.91 0.11 1.50 16 29 C -0.13 -2.45 9.07 71.98 0.65 -1.79 16 30 C -0.18 -2.74 8.48 71.98 0.61 -2.13 16 31 H 0.10 1.71 8.14 -2.38 -0.02 1.69 16 32 H 0.07 1.02 8.12 -2.39 -0.02 1.00 16 33 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.06 2.48 6.98 -2.39 -0.02 2.47 16 35 H 0.02 1.05 5.41 -2.39 -0.01 1.04 16 36 H 0.27 15.83 8.31 -92.71 -0.77 15.06 16 37 H 0.05 1.97 8.03 -2.39 -0.02 1.95 16 38 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.41 7.59 8.54 -92.71 -0.79 6.80 16 40 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 41 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 42 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 43 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 44 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 45 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 46 H 0.05 0.57 6.59 -2.39 -0.02 0.55 16 47 H 0.09 1.11 6.13 -2.39 -0.01 1.09 16 48 H 0.06 1.66 5.77 -2.39 -0.01 1.64 16 49 H 0.07 1.01 6.37 -2.39 -0.02 0.99 16 50 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 51 H 0.04 1.01 8.14 -2.38 -0.02 0.99 16 52 H 0.05 0.80 6.74 -2.39 -0.02 0.79 16 53 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 54 H 0.07 0.90 6.48 -2.39 -0.02 0.88 16 Total: -1.00 -76.08 402.27 -0.94 -77.01 By element: Atomic # 1 Polarization: 17.27 SS G_CDS: 0.00 Total: 17.27 kcal Atomic # 6 Polarization: 10.82 SS G_CDS: 6.72 Total: 17.53 kcal Atomic # 7 Polarization: -119.17 SS G_CDS: -7.70 Total: -126.88 kcal Atomic # 8 Polarization: -33.08 SS G_CDS: -1.61 Total: -34.69 kcal Atomic # 14 Polarization: 48.09 SS G_CDS: 1.67 Total: 49.75 kcal Total: -76.08 -0.94 -77.01 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082198619.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.034 kcal (2) G-P(sol) polarization free energy of solvation -76.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds