Wall clock time and date at job start Sat Apr 11 2020 05:49:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53007 * 109.46726 * 2 1 4 4 N 1.46890 * 109.47111 * 119.99478 * 2 1 3 5 5 C 1.47013 * 111.00431 * 303.64218 * 4 2 1 6 6 C 1.53103 * 109.25987 * 177.61022 * 5 4 2 7 7 O 1.43091 * 109.28277 * 56.84871 * 6 5 4 8 8 C 1.43020 * 113.68830 * 301.35605 * 7 6 5 9 9 H 1.09002 * 109.50941 * 298.69500 * 8 7 6 10 10 C 1.50702 * 109.50740 * 178.60719 * 8 7 6 11 11 O 1.21284 * 119.99653 * 355.09012 * 10 8 7 12 12 N 1.34775 * 119.99948 * 175.08768 * 10 8 7 13 13 C 1.46503 * 119.99809 * 179.97438 * 12 10 8 14 14 H 1.08997 * 109.47047 * 35.00674 * 13 12 10 15 15 C 1.52998 * 109.47282 * 275.00219 * 13 12 10 16 16 C 1.53005 * 109.47011 * 179.97438 * 15 13 12 17 17 C 1.53005 * 109.46750 * 60.00242 * 16 15 13 18 18 C 1.52998 * 109.47166 * 299.99663 * 17 16 15 19 19 C 1.53001 * 109.46772 * 154.99977 * 13 12 10 20 20 H 1.09007 * 109.46859 * 60.00686 * 19 13 12 21 21 N 1.46491 * 109.47402 * 300.00326 * 19 13 12 22 22 C 1.36939 * 120.00110 * 154.99946 * 21 19 13 23 23 H 1.08004 * 119.99850 * 359.97438 * 22 21 19 24 24 C 1.38808 * 120.00301 * 179.97438 * 22 21 19 25 25 N 1.31620 * 120.00015 * 0.02562 * 24 22 21 26 26 Si 1.86793 * 120.00426 * 179.97438 * 24 22 21 27 27 H 1.48506 * 109.47059 * 60.00200 * 26 24 22 28 28 H 1.48505 * 109.47496 * 180.02562 * 26 24 22 29 29 H 1.48499 * 109.47157 * 300.00470 * 26 24 22 30 30 C 1.47016 * 111.00239 * 180.02562 * 4 2 1 31 31 H 1.08997 * 109.47622 * 299.99719 * 1 2 3 32 32 H 1.08999 * 109.47157 * 60.00273 * 1 2 3 33 33 H 1.09001 * 109.46400 * 179.97438 * 1 2 3 34 34 H 1.08997 * 109.46924 * 240.00009 * 2 1 3 35 35 H 1.08993 * 109.47180 * 180.02562 * 3 2 1 36 36 H 1.08999 * 109.47079 * 299.99774 * 3 2 1 37 37 H 1.08997 * 109.46841 * 59.99803 * 3 2 1 38 38 H 1.09000 * 109.50641 * 297.53969 * 5 4 2 39 39 H 1.08997 * 109.51027 * 57.62626 * 5 4 2 40 40 H 1.08995 * 109.50599 * 176.78096 * 6 5 4 41 41 H 1.09004 * 109.49940 * 296.90836 * 6 5 4 42 42 H 0.97005 * 119.99879 * 0.02562 * 12 10 8 43 43 H 1.08998 * 109.46938 * 300.00104 * 15 13 12 44 44 H 1.08998 * 109.46999 * 60.00050 * 15 13 12 45 45 H 1.09003 * 109.46683 * 179.97438 * 16 15 13 46 46 H 1.08997 * 109.47279 * 300.00431 * 16 15 13 47 47 H 1.08997 * 109.47076 * 60.00064 * 17 16 15 48 48 H 1.08994 * 109.46785 * 179.97438 * 17 16 15 49 49 H 1.08992 * 109.47122 * 179.97438 * 18 17 16 50 50 H 1.08998 * 109.46938 * 300.00274 * 18 17 16 51 51 H 0.97000 * 120.00094 * 335.00002 * 21 19 13 52 52 H 0.97002 * 120.00754 * 179.97438 * 25 24 22 53 53 H 1.09008 * 109.50469 * 62.46058 * 30 4 2 54 54 H 1.09003 * 109.50515 * 302.33528 * 30 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0197 -0.6923 1.1994 5 6 1.4785 -0.0779 2.4204 6 6 1.9650 -0.8649 3.6402 7 8 3.3955 -0.9000 3.6401 8 6 3.9556 -1.4926 2.4651 9 1 3.6246 -2.5282 2.3865 10 6 5.4597 -1.4501 2.5481 11 8 6.0001 -0.8822 3.4736 12 7 6.2043 -2.0431 1.5940 13 6 7.6665 -2.0013 1.6745 14 1 7.9745 -2.0510 2.7189 15 6 8.1744 -0.6980 1.0544 16 6 9.7014 -0.6541 1.1391 17 6 10.2888 -1.8441 0.3775 18 6 9.7810 -3.1473 0.9975 19 6 8.2534 -3.1912 0.9126 20 1 7.9454 -3.1415 -0.1319 21 7 7.7671 -4.4391 1.5063 22 6 7.7102 -5.5800 0.7511 23 1 8.0235 -5.5598 -0.2823 24 6 7.2500 -6.7625 1.3137 25 7 6.8677 -6.7871 2.5730 26 14 7.1717 -8.3187 0.2835 27 1 8.5327 -8.6590 -0.2033 28 1 6.6481 -9.4348 1.1115 29 1 6.2714 -8.0993 -0.8769 30 6 3.4893 -0.7114 1.2337 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3632 -1.0277 -0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 3.1299 1.4427 -0.0005 36 1 1.6766 1.9564 -0.8900 37 1 1.6766 1.9564 0.8900 38 1 1.8228 0.9539 2.4920 39 1 0.3892 -0.0964 2.3852 40 1 1.6132 -0.3795 4.5505 41 1 1.5760 -1.8822 3.5957 42 1 5.7720 -2.4970 0.8537 43 1 7.8664 -0.6484 0.0100 44 1 7.7562 0.1497 1.5972 45 1 10.0632 0.2742 0.6969 46 1 10.0090 -0.7036 2.1835 47 1 9.9812 -1.7945 -0.6670 48 1 11.3766 -1.8125 0.4374 49 1 10.1990 -3.9950 0.4547 50 1 10.0886 -3.1967 2.0420 51 1 7.4854 -4.4572 2.4343 52 1 6.5457 -7.6134 2.9662 53 1 3.8655 0.3103 1.2866 54 1 3.8682 -1.1933 0.3324 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085309132.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:10 Heat of formation + Delta-G solvation = -96.722449 kcal Electronic energy + Delta-G solvation = -31758.722954 eV Core-core repulsion = 27729.285157 eV Total energy + Delta-G solvation = -4029.437797 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.63066 -40.48842 -39.09776 -37.72173 -35.80209 -35.20704 -33.12651 -32.91352 -32.43989 -30.57765 -29.40351 -28.21800 -27.74925 -25.64830 -25.38623 -23.81238 -22.84924 -22.44033 -21.39719 -20.79404 -20.47852 -19.20022 -18.39963 -17.92898 -17.23785 -16.96383 -16.61513 -16.53520 -16.03697 -15.87847 -15.64300 -15.46037 -15.29847 -15.12600 -14.92300 -14.71028 -14.60063 -14.14024 -13.94440 -13.82949 -13.59098 -13.50203 -13.14416 -12.94538 -12.90812 -12.77425 -12.73471 -12.37762 -12.25743 -12.16571 -12.07076 -12.05645 -12.00183 -11.79865 -11.61174 -11.59239 -11.43267 -11.10835 -10.95573 -10.81681 -10.63145 -9.98952 -9.38985 -8.98159 -7.89129 -5.18464 1.49844 1.50695 1.51920 1.57897 1.85176 2.58693 2.66979 3.03106 3.44100 3.61281 3.66968 3.73903 3.83634 3.86933 3.95268 3.96312 4.14187 4.16690 4.22137 4.26758 4.32000 4.32796 4.41966 4.44453 4.50165 4.50855 4.59679 4.62846 4.65445 4.70342 4.74579 4.85268 4.88512 4.95642 4.98468 5.01545 5.06415 5.15887 5.24684 5.27725 5.30315 5.31525 5.36839 5.46646 5.53398 5.56949 5.67156 5.86611 6.00111 6.01604 6.30039 6.55124 7.20568 7.36886 8.10582 8.34803 9.33754 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.009225 B = 0.003580 C = 0.002996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3034.539796 B = 7818.617334 C = 9344.699036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.073 3.927 3 C -0.185 4.185 4 N -0.535 5.535 5 C 0.015 3.985 6 C 0.054 3.946 7 O -0.387 6.387 8 C 0.083 3.917 9 H 0.089 0.911 10 C 0.520 3.480 11 O -0.572 6.572 12 N -0.696 5.696 13 C 0.148 3.852 14 H 0.050 0.950 15 C -0.114 4.114 16 C -0.111 4.111 17 C -0.109 4.109 18 C -0.129 4.129 19 C 0.174 3.826 20 H 0.062 0.938 21 N -0.732 5.732 22 C -0.232 4.232 23 H 0.081 0.919 24 C -0.073 4.073 25 N -0.970 5.970 26 Si 0.968 3.032 27 H -0.281 1.281 28 H -0.303 1.303 29 H -0.275 1.275 30 C 0.042 3.958 31 H 0.061 0.939 32 H 0.074 0.926 33 H 0.060 0.940 34 H 0.088 0.912 35 H 0.048 0.952 36 H 0.077 0.923 37 H 0.055 0.945 38 H 0.044 0.956 39 H 0.114 0.886 40 H 0.119 0.881 41 H 0.061 0.939 42 H 0.410 0.590 43 H 0.083 0.917 44 H 0.054 0.946 45 H 0.088 0.912 46 H 0.051 0.949 47 H 0.074 0.926 48 H 0.072 0.928 49 H 0.051 0.949 50 H 0.038 0.962 51 H 0.368 0.632 52 H 0.248 0.752 53 H 0.047 0.953 54 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.801 18.320 -8.384 22.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.034 4.034 3 C -0.243 4.243 4 N -0.260 5.260 5 C -0.113 4.113 6 C -0.023 4.023 7 O -0.306 6.306 8 C 0.021 3.979 9 H 0.106 0.894 10 C 0.306 3.694 11 O -0.450 6.450 12 N -0.346 5.346 13 C 0.043 3.957 14 H 0.068 0.932 15 C -0.153 4.153 16 C -0.149 4.149 17 C -0.147 4.147 18 C -0.170 4.170 19 C 0.065 3.935 20 H 0.080 0.920 21 N -0.371 5.371 22 C -0.364 4.364 23 H 0.099 0.901 24 C -0.265 4.265 25 N -0.621 5.621 26 Si 0.798 3.202 27 H -0.207 1.207 28 H -0.230 1.230 29 H -0.201 1.201 30 C -0.087 4.087 31 H 0.080 0.920 32 H 0.093 0.907 33 H 0.079 0.921 34 H 0.106 0.894 35 H 0.067 0.933 36 H 0.096 0.904 37 H 0.074 0.926 38 H 0.063 0.937 39 H 0.132 0.868 40 H 0.137 0.863 41 H 0.080 0.920 42 H 0.246 0.754 43 H 0.101 0.899 44 H 0.073 0.927 45 H 0.106 0.894 46 H 0.069 0.931 47 H 0.093 0.907 48 H 0.091 0.909 49 H 0.070 0.930 50 H 0.057 0.943 51 H 0.199 0.801 52 H 0.056 0.944 53 H 0.065 0.935 54 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -9.483 18.176 -7.755 21.919 hybrid contribution -0.063 -0.902 0.098 0.910 sum -9.547 17.274 -7.656 21.170 Atomic orbital electron populations 1.21874 0.92758 1.02610 1.02742 1.21841 0.96870 0.92506 0.92228 1.22452 1.01091 0.97771 1.03024 1.62495 1.06153 1.54134 1.03208 1.22909 1.02174 0.96655 0.89552 1.23027 0.78880 1.00988 0.99371 1.88094 1.21916 1.81576 1.39003 1.21872 0.89862 0.98866 0.87276 0.89376 1.20433 0.89188 0.78117 0.81710 1.90657 1.74412 1.45349 1.34629 1.45768 1.06946 1.55250 1.26659 1.21205 0.78771 0.96108 0.99591 0.93181 1.21802 0.96785 0.95211 1.01471 1.21483 0.93679 0.99196 1.00524 1.21512 1.00467 0.92878 0.99842 1.22109 0.96877 0.98021 0.99957 1.20676 0.92703 0.84077 0.96026 0.91972 1.42592 1.77153 1.05523 1.11850 1.19554 1.34157 0.88019 0.94656 0.90144 1.25481 1.02965 1.00918 0.97130 1.69839 1.51577 1.26980 1.13715 0.85294 0.77776 0.79469 0.77683 1.20730 1.22970 1.20059 1.22527 0.89646 0.99387 0.97145 0.91988 0.90669 0.92122 0.89390 0.93332 0.90427 0.92575 0.93742 0.86837 0.86277 0.92022 0.75444 0.89863 0.92699 0.89376 0.93055 0.90713 0.90908 0.93040 0.94276 0.80133 0.94371 0.93485 0.87921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.68 8.85 71.98 0.64 -1.04 16 2 C 0.07 1.11 3.04 44.92 0.14 1.24 16 3 C -0.18 -2.62 8.49 71.98 0.61 -2.01 16 4 N -0.53 -10.56 4.76 -869.96 -4.14 -14.70 16 5 C 0.01 0.27 4.87 86.32 0.42 0.69 16 6 C 0.05 1.20 7.01 72.02 0.50 1.70 16 7 O -0.39 -12.55 10.02 -130.02 -1.30 -13.85 16 8 C 0.08 2.52 3.21 29.88 0.10 2.62 16 9 H 0.09 2.77 8.14 -2.39 -0.02 2.75 16 10 C 0.52 18.89 7.15 87.66 0.63 19.51 16 11 O -0.57 -25.42 16.17 15.92 0.26 -25.16 16 12 N -0.70 -23.00 4.87 -442.53 -2.16 -25.16 16 13 C 0.15 5.08 1.98 44.99 0.09 5.16 16 14 H 0.05 2.08 7.58 -2.39 -0.02 2.06 16 15 C -0.11 -3.03 5.49 30.60 0.17 -2.86 16 16 C -0.11 -2.62 5.92 30.60 0.18 -2.43 16 17 C -0.11 -2.66 5.92 30.60 0.18 -2.48 16 18 C -0.13 -4.36 5.50 30.61 0.17 -4.19 16 19 C 0.17 6.41 2.30 45.01 0.10 6.51 16 20 H 0.06 2.17 8.08 -2.38 -0.02 2.16 16 21 N -0.73 -35.37 4.95 -322.86 -1.60 -36.97 16 22 C -0.23 -12.22 9.93 84.03 0.83 -11.39 16 23 H 0.08 3.99 7.83 -2.91 -0.02 3.97 16 24 C -0.07 -4.07 5.50 84.86 0.47 -3.60 16 25 N -0.97 -59.27 13.06 21.65 0.28 -58.99 16 26 Si 0.97 45.19 29.55 68.60 2.03 47.22 16 27 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 28 H -0.30 -14.59 7.11 99.48 0.71 -13.88 16 29 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 30 C 0.04 0.97 4.43 86.31 0.38 1.35 16 31 H 0.06 0.67 6.30 -2.39 -0.02 0.65 16 32 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.09 1.32 8.14 -2.39 -0.02 1.31 16 35 H 0.05 0.80 6.46 -2.39 -0.02 0.78 16 36 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.06 0.82 6.54 -2.39 -0.02 0.81 16 38 H 0.04 0.84 6.52 -2.39 -0.02 0.83 16 39 H 0.11 1.54 6.11 -2.39 -0.01 1.52 16 40 H 0.12 2.13 8.14 -2.39 -0.02 2.12 16 41 H 0.06 1.36 8.14 -2.38 -0.02 1.35 16 42 H 0.41 12.39 8.47 -92.70 -0.79 11.61 16 43 H 0.08 1.88 8.14 -2.39 -0.02 1.87 16 44 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 45 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 46 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 47 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 48 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 49 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 50 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 51 H 0.37 20.22 7.80 -92.71 -0.72 19.49 16 52 H 0.25 14.88 8.31 -92.71 -0.77 14.11 16 53 H 0.05 1.14 6.44 -2.38 -0.02 1.13 16 54 H 0.10 2.10 8.01 -2.39 -0.02 2.08 16 Total: -1.00 -70.73 410.88 -1.64 -72.37 By element: Atomic # 1 Polarization: 47.07 SS G_CDS: -0.62 Total: 46.45 kcal Atomic # 6 Polarization: 3.18 SS G_CDS: 5.61 Total: 8.79 kcal Atomic # 7 Polarization: -128.21 SS G_CDS: -7.61 Total: -135.82 kcal Atomic # 8 Polarization: -37.97 SS G_CDS: -1.04 Total: -39.02 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.22 kcal Total: -70.73 -1.64 -72.37 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085309132.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.353 kcal (2) G-P(sol) polarization free energy of solvation -70.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds