Wall clock time and date at job start Sat Apr 11 2020 05:49:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.46921 * 2 1 4 4 N 1.46900 * 109.47162 * 120.00110 * 2 1 3 5 5 C 1.47012 * 110.99975 * 303.63179 * 4 2 1 6 6 C 1.53094 * 109.25600 * 177.60724 * 5 4 2 7 7 O 1.43018 * 109.29540 * 56.82804 * 6 5 4 8 8 C 1.43015 * 113.73596 * 301.39992 * 7 6 5 9 9 H 1.09003 * 109.51008 * 298.64034 * 8 7 6 10 10 C 1.50706 * 109.50921 * 178.55395 * 8 7 6 11 11 O 1.21283 * 119.99503 * 355.08627 * 10 8 7 12 12 N 1.34773 * 120.00081 * 174.81354 * 10 8 7 13 13 C 1.46506 * 119.99968 * 180.02562 * 12 10 8 14 14 C 1.52992 * 109.47161 * 179.97438 * 13 12 10 15 15 H 1.09004 * 110.01606 * 305.05985 * 14 13 12 16 16 C 1.53870 * 110.03557 * 66.45079 * 14 13 12 17 17 C 1.54261 * 106.60095 * 119.28469 * 16 14 13 18 18 C 1.54899 * 104.19463 * 23.60946 * 17 16 14 19 19 H 1.08995 * 110.75153 * 80.37505 * 18 17 16 20 20 N 1.46502 * 110.75362 * 203.55797 * 18 17 16 21 21 C 1.36932 * 119.99759 * 273.54296 * 20 18 17 22 22 H 1.08002 * 120.00584 * 0.02562 * 21 20 18 23 23 C 1.38819 * 119.99493 * 180.02562 * 21 20 18 24 24 N 1.31614 * 120.00190 * 0.02562 * 23 21 20 25 25 Si 1.86805 * 119.99576 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.46948 * 90.00201 * 25 23 21 27 27 H 1.48500 * 109.46828 * 210.00091 * 25 23 21 28 28 H 1.48493 * 109.47221 * 329.99706 * 25 23 21 29 29 C 1.54269 * 110.03180 * 183.61904 * 14 13 12 30 30 C 1.47018 * 110.99750 * 179.97438 * 4 2 1 31 31 H 1.09003 * 109.46788 * 299.99903 * 1 2 3 32 32 H 1.08997 * 109.47665 * 59.99789 * 1 2 3 33 33 H 1.09006 * 109.47381 * 180.02562 * 1 2 3 34 34 H 1.09003 * 109.46788 * 240.00097 * 2 1 3 35 35 H 1.08993 * 109.47224 * 60.00301 * 3 2 1 36 36 H 1.09000 * 109.46630 * 180.02562 * 3 2 1 37 37 H 1.08998 * 109.47052 * 299.99758 * 3 2 1 38 38 H 1.08996 * 109.50431 * 297.54262 * 5 4 2 39 39 H 1.08998 * 109.50507 * 57.63143 * 5 4 2 40 40 H 1.09003 * 109.50761 * 176.78119 * 6 5 4 41 41 H 1.09008 * 109.51013 * 296.91710 * 6 5 4 42 42 H 0.96998 * 120.00525 * 359.97438 * 12 10 8 43 43 H 1.09004 * 109.46587 * 299.99661 * 13 12 10 44 44 H 1.08998 * 109.47213 * 59.99069 * 13 12 10 45 45 H 1.09007 * 110.03337 * 238.56987 * 16 14 13 46 46 H 1.08999 * 110.03381 * 359.95036 * 16 14 13 47 47 H 1.09003 * 110.48736 * 142.28409 * 17 16 14 48 48 H 1.08996 * 110.48665 * 264.93336 * 17 16 14 49 49 H 0.96994 * 119.99641 * 93.55388 * 20 18 17 50 50 H 0.97000 * 119.99738 * 180.02562 * 24 23 21 51 51 H 1.08995 * 110.48803 * 335.77989 * 29 14 13 52 52 H 1.08996 * 110.48448 * 98.42363 * 29 14 13 53 53 H 1.08996 * 109.50335 * 62.45590 * 30 4 2 54 54 H 1.08999 * 109.54446 * 302.34886 * 30 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 1.4786 -0.0779 2.4204 6 6 1.9650 -0.8651 3.6401 7 8 3.3947 -0.9010 3.6399 8 6 3.9555 -1.4929 2.4649 9 1 3.6251 -2.5287 2.3858 10 6 5.4597 -1.4496 2.5484 11 8 5.9994 -0.8817 3.4742 12 7 6.2048 -2.0467 1.5973 13 6 7.6670 -2.0051 1.6788 14 6 8.2658 -2.7526 0.4857 15 1 7.8659 -3.7657 0.4414 16 6 7.9477 -2.0029 -0.8197 17 6 9.3027 -1.6158 -1.4471 18 6 10.3029 -2.6376 -0.8513 19 1 10.2476 -3.5873 -1.3834 20 7 11.6678 -2.1064 -0.8818 21 6 12.4401 -2.2669 -2.0011 22 1 12.0429 -2.7848 -2.8617 23 6 13.7337 -1.7640 -2.0298 24 7 14.2179 -1.1333 -0.9809 25 14 14.7870 -1.9823 -3.5570 26 1 14.5834 -0.8274 -4.4679 27 1 16.2174 -2.0575 -3.1651 28 1 14.3977 -3.2356 -4.2518 29 6 9.8032 -2.7950 0.6062 30 6 3.4893 -0.7126 1.2330 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3634 -1.0277 0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 1.6767 1.9563 0.8899 36 1 3.1299 1.4424 -0.0005 37 1 1.6766 1.9563 -0.8900 38 1 1.8230 0.9537 2.4919 39 1 0.3893 -0.0964 2.3852 40 1 1.6133 -0.3797 4.5505 41 1 1.5760 -1.8824 3.5956 42 1 5.7731 -2.5046 0.8592 43 1 8.0023 -0.9680 1.6636 44 1 7.9930 -2.4787 2.6048 45 1 7.3942 -2.6524 -1.4980 46 1 7.3659 -1.1068 -0.6035 47 1 9.2617 -1.7104 -2.5322 48 1 9.5791 -0.6008 -1.1618 49 1 12.0245 -1.6411 -0.1091 50 1 15.1217 -0.7816 -1.0011 51 1 10.1604 -1.9704 1.2230 52 1 10.1272 -3.7501 1.0195 53 1 3.8661 0.3088 1.2854 54 1 3.8681 -1.1945 0.3317 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086785011.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:23 Heat of formation + Delta-G solvation = -97.463813 kcal Electronic energy + Delta-G solvation = -30237.718358 eV Core-core repulsion = 26208.248414 eV Total energy + Delta-G solvation = -4029.469945 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.57488 -40.28088 -39.32830 -37.76830 -36.33424 -35.05813 -33.20945 -32.58341 -32.25062 -30.29509 -28.95985 -28.23244 -27.83286 -25.85444 -25.28023 -24.69539 -23.10025 -21.71580 -21.02433 -20.59922 -20.49163 -19.15335 -18.48084 -17.88427 -17.29745 -16.92847 -16.82298 -16.56991 -16.35248 -15.97022 -15.80446 -15.61151 -15.41682 -15.19040 -15.00795 -14.91762 -14.28976 -14.01272 -13.95414 -13.82486 -13.58956 -13.34429 -13.13672 -12.94823 -12.94216 -12.73677 -12.69318 -12.36775 -12.34156 -12.13390 -12.07332 -11.96940 -11.79483 -11.76180 -11.63399 -11.58468 -11.50265 -11.23327 -10.88700 -10.85538 -10.72380 -10.15325 -9.41519 -8.97385 -7.93475 -5.21561 1.46179 1.46782 1.48610 1.56964 1.77860 2.56790 2.66829 3.02938 3.38812 3.60638 3.67118 3.72167 3.80106 3.82187 3.88758 3.95293 3.98480 4.16289 4.22718 4.31226 4.31829 4.40183 4.42422 4.49324 4.50639 4.63790 4.66140 4.66394 4.67551 4.73916 4.80390 4.80716 4.86061 4.89885 4.91189 4.99703 5.06368 5.10412 5.14206 5.21410 5.27742 5.32757 5.36666 5.46146 5.50871 5.56742 5.65822 5.86957 5.97391 6.01866 6.29349 6.51076 7.17186 7.34326 8.13562 8.34706 9.30313 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.019344 B = 0.001940 C = 0.001826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.127782 B =14432.936586 C =15333.882282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.074 3.926 3 C -0.188 4.188 4 N -0.525 5.525 5 C 0.009 3.991 6 C 0.058 3.942 7 O -0.391 6.391 8 C 0.084 3.916 9 H 0.116 0.884 10 C 0.515 3.485 11 O -0.574 6.574 12 N -0.704 5.704 13 C 0.134 3.866 14 C -0.082 4.082 15 H 0.107 0.893 16 C -0.107 4.107 17 C -0.139 4.139 18 C 0.164 3.836 19 H 0.054 0.946 20 N -0.737 5.737 21 C -0.235 4.235 22 H 0.077 0.923 23 C -0.082 4.082 24 N -0.972 5.972 25 Si 0.973 3.027 26 H -0.289 1.289 27 H -0.298 1.298 28 H -0.267 1.267 29 C -0.117 4.117 30 C 0.031 3.969 31 H 0.058 0.942 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.093 0.907 35 H 0.052 0.948 36 H 0.046 0.954 37 H 0.072 0.928 38 H 0.035 0.965 39 H 0.112 0.888 40 H 0.114 0.886 41 H 0.074 0.926 42 H 0.419 0.581 43 H 0.049 0.951 44 H 0.061 0.939 45 H 0.090 0.910 46 H 0.067 0.933 47 H 0.050 0.950 48 H 0.036 0.964 49 H 0.370 0.630 50 H 0.249 0.751 51 H 0.052 0.948 52 H 0.071 0.929 53 H 0.034 0.966 54 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.731 -2.184 3.064 34.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.033 4.033 3 C -0.247 4.247 4 N -0.249 5.249 5 C -0.118 4.118 6 C -0.018 4.018 7 O -0.310 6.310 8 C 0.023 3.977 9 H 0.133 0.867 10 C 0.301 3.699 11 O -0.453 6.453 12 N -0.358 5.358 13 C 0.010 3.990 14 C -0.101 4.101 15 H 0.125 0.875 16 C -0.145 4.145 17 C -0.180 4.180 18 C 0.055 3.945 19 H 0.072 0.928 20 N -0.376 5.376 21 C -0.367 4.367 22 H 0.095 0.905 23 C -0.274 4.274 24 N -0.624 5.624 25 Si 0.802 3.198 26 H -0.216 1.216 27 H -0.224 1.224 28 H -0.192 1.192 29 C -0.156 4.156 30 C -0.097 4.097 31 H 0.077 0.923 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.112 0.888 35 H 0.071 0.929 36 H 0.065 0.935 37 H 0.091 0.909 38 H 0.054 0.946 39 H 0.130 0.870 40 H 0.131 0.869 41 H 0.092 0.908 42 H 0.257 0.743 43 H 0.067 0.933 44 H 0.079 0.921 45 H 0.108 0.892 46 H 0.086 0.914 47 H 0.069 0.931 48 H 0.055 0.945 49 H 0.202 0.798 50 H 0.058 0.942 51 H 0.071 0.929 52 H 0.089 0.911 53 H 0.053 0.947 54 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -34.352 -2.278 3.677 34.623 hybrid contribution 1.474 1.233 -0.704 2.046 sum -32.878 -1.045 2.973 33.029 Atomic orbital electron populations 1.21872 0.92812 1.02845 1.02484 1.21830 0.96801 0.92064 0.92646 1.22481 1.00991 0.98455 1.02757 1.62556 1.06117 1.53491 1.02781 1.22946 1.02247 0.96586 0.90068 1.22977 0.78735 1.01333 0.98756 1.88097 1.21969 1.81974 1.38974 1.21953 0.89157 0.99896 0.86689 0.86673 1.20626 0.89478 0.78002 0.81820 1.90727 1.74630 1.44758 1.35142 1.45744 1.06758 1.56080 1.27175 1.21367 0.78844 1.00078 0.98680 1.21827 0.94231 1.00555 0.93517 0.87479 1.22148 0.96185 1.00336 0.95861 1.22899 0.96300 0.99202 0.99571 1.21475 0.83364 0.94860 0.94785 0.92772 1.42629 1.11613 1.67451 1.15934 1.19646 0.94512 1.28510 0.94071 0.90489 1.25594 0.99140 1.02011 1.00648 1.69827 1.16693 1.44757 1.31075 0.85144 0.77638 0.78000 0.79041 1.21602 1.22444 1.19170 1.22478 0.94827 1.01639 0.96653 1.22649 0.89646 0.99432 0.98012 0.92287 0.91144 0.91466 0.88845 0.92884 0.93538 0.90860 0.94647 0.86961 0.86853 0.90761 0.74320 0.93266 0.92075 0.89181 0.91428 0.93070 0.94519 0.79796 0.94185 0.92910 0.91058 0.94746 0.86941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.96 8.85 71.98 0.64 -0.32 16 2 C 0.07 0.70 3.04 44.91 0.14 0.84 16 3 C -0.19 -2.12 8.49 71.98 0.61 -1.51 16 4 N -0.52 -6.10 4.75 -870.00 -4.14 -10.23 16 5 C 0.01 0.11 4.87 86.31 0.42 0.53 16 6 C 0.06 0.78 7.01 72.01 0.50 1.28 16 7 O -0.39 -8.77 10.01 -130.02 -1.30 -10.07 16 8 C 0.08 1.50 3.21 29.88 0.10 1.59 16 9 H 0.12 1.48 8.14 -2.39 -0.02 1.46 16 10 C 0.52 12.34 7.18 87.66 0.63 12.97 16 11 O -0.57 -20.32 16.51 15.92 0.26 -20.06 16 12 N -0.70 -12.66 5.26 -463.05 -2.44 -15.10 16 13 C 0.13 3.08 4.70 86.38 0.41 3.49 16 14 C -0.08 -1.75 2.98 -10.07 -0.03 -1.78 16 15 H 0.11 1.72 8.14 -2.38 -0.02 1.70 16 16 C -0.11 -2.33 6.13 31.32 0.19 -2.14 16 17 C -0.14 -4.61 6.51 31.67 0.21 -4.40 16 18 C 0.16 6.20 3.53 46.28 0.16 6.36 16 19 H 0.05 2.04 8.12 -2.39 -0.02 2.02 16 20 N -0.74 -37.41 5.26 -316.84 -1.67 -39.08 16 21 C -0.24 -13.10 9.98 84.04 0.84 -12.26 16 22 H 0.08 4.08 7.83 -2.91 -0.02 4.06 16 23 C -0.08 -4.77 5.50 84.86 0.47 -4.31 16 24 N -0.97 -60.65 13.06 21.65 0.28 -60.37 16 25 Si 0.97 46.51 29.55 68.60 2.03 48.54 16 26 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 27 H -0.30 -14.41 7.11 99.48 0.71 -13.70 16 28 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 29 C -0.12 -3.57 5.97 31.67 0.19 -3.38 16 30 C 0.03 0.44 4.44 86.31 0.38 0.83 16 31 H 0.06 0.38 6.30 -2.39 -0.02 0.36 16 32 H 0.07 0.38 8.14 -2.39 -0.02 0.36 16 33 H 0.07 0.45 8.14 -2.38 -0.02 0.43 16 34 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.05 0.65 6.54 -2.39 -0.02 0.64 16 36 H 0.05 0.65 6.46 -2.39 -0.02 0.64 16 37 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 38 H 0.04 0.51 6.52 -2.39 -0.02 0.50 16 39 H 0.11 0.84 6.11 -2.39 -0.01 0.83 16 40 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 41 H 0.07 0.79 8.14 -2.38 -0.02 0.77 16 42 H 0.42 4.39 8.20 -92.71 -0.76 3.63 16 43 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 44 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 45 H 0.09 1.48 8.14 -2.38 -0.02 1.46 16 46 H 0.07 1.38 7.58 -2.39 -0.02 1.37 16 47 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 48 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 49 H 0.37 20.48 7.73 -92.71 -0.72 19.76 16 50 H 0.25 15.12 8.31 -92.71 -0.77 14.35 16 51 H 0.05 1.79 7.74 -2.39 -0.02 1.78 16 52 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 53 H 0.03 0.64 6.44 -2.39 -0.02 0.62 16 54 H 0.11 1.08 8.03 -2.39 -0.02 1.06 16 Total: -1.00 -76.27 414.02 -1.70 -77.98 By element: Atomic # 1 Polarization: 31.19 SS G_CDS: -0.59 Total: 30.60 kcal Atomic # 6 Polarization: -8.07 SS G_CDS: 5.85 Total: -2.22 kcal Atomic # 7 Polarization: -116.82 SS G_CDS: -7.95 Total: -124.78 kcal Atomic # 8 Polarization: -29.08 SS G_CDS: -1.04 Total: -30.12 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 2.03 Total: 48.54 kcal Total: -76.27 -1.70 -77.98 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086785011.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.488 kcal (2) G-P(sol) polarization free energy of solvation -76.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds