Wall clock time and date at job start Sat Apr 11 2020 05:49:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.53000 * 109.47170 * 2 1 4 4 H 1.08998 * 109.46969 * 54.99775 * 3 2 1 5 5 N 1.46504 * 109.46937 * 294.99667 * 3 2 1 6 6 C 1.34774 * 119.99817 * 85.00006 * 5 3 2 7 7 C 1.50698 * 119.99975 * 179.97438 * 6 5 3 8 8 O 1.21290 * 120.00244 * 0.02562 * 6 5 3 9 9 C 1.50695 * 109.46741 * 174.99569 * 3 2 1 10 10 O 1.21285 * 119.99668 * 120.00182 * 9 3 2 11 11 N 1.34771 * 120.00664 * 300.00155 * 9 3 2 12 12 C 1.46502 * 120.00422 * 180.02562 * 11 9 3 13 13 C 1.53005 * 109.47031 * 179.97438 * 12 11 9 14 14 H 1.09000 * 109.69851 * 299.75736 * 13 12 11 15 15 C 1.52760 * 109.50421 * 179.63837 * 13 12 11 16 16 C 1.53042 * 109.37822 * 185.70480 * 15 13 12 17 17 C 1.53040 * 109.53971 * 61.24382 * 16 15 13 18 18 C 1.53002 * 109.49907 * 178.68152 * 17 16 15 19 19 C 1.53002 * 109.49828 * 58.58184 * 17 16 15 20 20 C 1.53194 * 109.30952 * 298.63309 * 17 16 15 21 21 N 1.46921 * 109.58530 * 60.11336 * 13 12 11 22 22 C 1.36938 * 120.63503 * 353.41358 * 21 13 12 23 23 H 1.08009 * 119.99545 * 32.29630 * 22 21 13 24 24 C 1.38808 * 120.00456 * 212.29245 * 22 21 13 25 25 N 1.31620 * 119.99826 * 20.48040 * 24 22 21 26 26 Si 1.86800 * 120.00101 * 200.47649 * 24 22 21 27 27 H 1.48495 * 109.47076 * 269.99924 * 26 24 22 28 28 H 1.48502 * 109.46918 * 30.00399 * 26 24 22 29 29 H 1.48500 * 109.47027 * 149.99986 * 26 24 22 30 30 H 1.09000 * 109.46900 * 300.00577 * 1 2 3 31 31 H 1.09008 * 109.46381 * 60.00334 * 1 2 3 32 32 H 1.09000 * 109.47126 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.46900 * 239.99423 * 2 1 3 34 34 H 1.09003 * 109.46484 * 120.00381 * 2 1 3 35 35 H 0.96992 * 119.99810 * 265.00258 * 5 3 2 36 36 H 1.08995 * 109.46950 * 0.02562 * 7 6 5 37 37 H 1.08993 * 109.46989 * 120.00299 * 7 6 5 38 38 H 1.09001 * 109.47376 * 240.00510 * 7 6 5 39 39 H 0.97002 * 119.99783 * 359.97438 * 11 9 3 40 40 H 1.09000 * 109.47081 * 59.99941 * 12 11 9 41 41 H 1.09000 * 109.46525 * 299.99435 * 12 11 9 42 42 H 1.08998 * 109.56284 * 65.67725 * 15 13 12 43 43 H 1.08993 * 109.39192 * 305.62999 * 15 13 12 44 44 H 1.09001 * 109.46431 * 301.22234 * 16 15 13 45 45 H 1.09005 * 109.45841 * 181.26153 * 16 15 13 46 46 H 1.08997 * 109.46841 * 179.83509 * 18 17 16 47 47 H 1.08994 * 109.47438 * 299.83919 * 18 17 16 48 48 H 1.09000 * 109.47117 * 59.83751 * 18 17 16 49 49 H 1.09001 * 109.46925 * 300.16552 * 19 17 16 50 50 H 1.09001 * 109.46483 * 60.16380 * 19 17 16 51 51 H 1.09004 * 109.47001 * 180.16310 * 19 17 16 52 52 H 1.08996 * 109.58832 * 294.84416 * 20 17 16 53 53 H 1.09003 * 109.70184 * 174.49391 * 20 17 16 54 54 H 0.97002 * 120.00331 * 5.58311 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 7 1.6526 2.0974 -1.2519 6 6 0.4353 2.6643 -1.3671 7 6 0.0369 3.3385 -2.6546 8 8 -0.3392 2.6327 -0.4342 9 6 3.5420 1.4442 0.1239 10 8 4.2217 1.9434 -0.7476 11 7 4.1298 0.8910 1.2032 12 6 5.5898 0.8932 1.3239 13 6 5.9945 0.2096 2.6315 14 1 5.5649 0.7484 3.4761 15 6 7.5172 0.2034 2.7539 16 6 7.9241 -0.6040 3.9887 17 6 7.4442 -2.0492 3.8362 18 6 7.8801 -2.8634 5.0561 19 6 8.0520 -2.6584 2.5711 20 6 5.9161 -2.0670 3.7290 21 7 5.5086 -1.1770 2.6333 22 6 4.6959 -1.6329 1.6298 23 1 4.8034 -1.2424 0.6285 24 6 3.7341 -2.5967 1.8993 25 7 3.3186 -2.7845 3.1340 26 14 3.0296 -3.6273 0.5098 27 1 1.8346 -2.9488 -0.0530 28 1 4.0531 -3.7904 -0.5537 29 1 2.6409 -4.9623 1.0315 30 1 -0.3633 0.5139 0.8899 31 1 -0.3632 0.5138 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5139 0.8900 35 1 2.2721 2.1230 -1.9978 36 1 0.8555 3.2670 -3.3706 37 1 -0.8466 2.8482 -3.0632 38 1 -0.1866 4.3877 -2.4613 39 1 3.5861 0.4921 1.9005 40 1 5.9528 1.9210 1.3242 41 1 6.0247 0.3543 0.4821 42 1 7.8795 1.2266 2.8527 43 1 7.9500 -0.2515 1.8630 44 1 7.4713 -0.1628 4.8766 45 1 9.0094 -0.5905 4.0899 46 1 7.5355 -3.8919 4.9484 47 1 8.9673 -2.8505 5.1320 48 1 7.4478 -2.4279 5.9569 49 1 7.7421 -2.0768 1.7028 50 1 9.1392 -2.6455 2.6479 51 1 7.7076 -3.6868 2.4614 52 1 5.4801 -1.7177 4.6649 53 1 5.5740 -3.0811 3.5226 54 1 3.6231 -2.1966 3.8430 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099246760.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:50 Heat of formation + Delta-G solvation = -87.123744 kcal Electronic energy + Delta-G solvation = -32617.736793 eV Core-core repulsion = 28588.715228 eV Total energy + Delta-G solvation = -4029.021566 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.56137 -40.57682 -39.83491 -36.80344 -36.35772 -35.25568 -34.04618 -33.29449 -31.52573 -30.62976 -29.40783 -28.10550 -27.58286 -27.21063 -24.83432 -23.76099 -23.08907 -21.86020 -21.58229 -21.19446 -19.48429 -19.17896 -18.34259 -17.87838 -17.09116 -17.03847 -16.68853 -16.29048 -15.99424 -15.65555 -15.52825 -15.37301 -15.04506 -14.94027 -14.83264 -14.57648 -14.34329 -14.05577 -13.63045 -13.58868 -13.46754 -13.30534 -13.12204 -13.07411 -12.83740 -12.79580 -12.67075 -12.59232 -12.35943 -12.33307 -12.22458 -12.00907 -11.91536 -11.75519 -11.62288 -11.35580 -11.09490 -10.95804 -10.91774 -10.75481 -10.38610 -10.12583 -9.89082 -8.71998 -7.99972 -5.27155 1.52050 1.57061 1.61906 1.64617 1.75925 1.95925 2.55235 2.65445 3.33807 3.52361 3.63187 3.86296 3.91201 3.93735 3.94746 4.00996 4.09968 4.23937 4.33775 4.36645 4.45362 4.46790 4.55482 4.58958 4.68023 4.68763 4.77185 4.78152 4.84122 4.87887 4.98033 5.00865 5.01705 5.03277 5.06509 5.08759 5.11409 5.15599 5.25761 5.29994 5.33571 5.36552 5.42782 5.46058 5.55761 5.60376 5.74063 6.08617 6.53381 6.55409 6.62101 7.16856 7.18726 7.24727 7.90157 8.38321 9.20157 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.014696 B = 0.003879 C = 0.003334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1904.760666 B = 7216.883153 C = 8396.850890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.125 4.125 3 C 0.138 3.862 4 H 0.104 0.896 5 N -0.705 5.705 6 C 0.505 3.495 7 C -0.161 4.161 8 O -0.584 6.584 9 C 0.508 3.492 10 O -0.580 6.580 11 N -0.685 5.685 12 C 0.143 3.857 13 C 0.162 3.838 14 H 0.028 0.972 15 C -0.124 4.124 16 C -0.091 4.091 17 C -0.087 4.087 18 C -0.131 4.131 19 C -0.117 4.117 20 C 0.175 3.825 21 N -0.602 5.602 22 C -0.314 4.314 23 H 0.049 0.951 24 C -0.051 4.051 25 N -0.945 5.945 26 Si 1.074 2.926 27 H -0.271 1.271 28 H -0.290 1.290 29 H -0.303 1.303 30 H 0.051 0.949 31 H 0.057 0.943 32 H 0.049 0.951 33 H 0.062 0.938 34 H 0.071 0.929 35 H 0.415 0.585 36 H 0.098 0.902 37 H 0.106 0.894 38 H 0.106 0.894 39 H 0.410 0.590 40 H 0.072 0.928 41 H 0.048 0.952 42 H 0.079 0.921 43 H 0.060 0.940 44 H 0.054 0.946 45 H 0.075 0.925 46 H 0.041 0.959 47 H 0.070 0.930 48 H 0.051 0.949 49 H 0.046 0.954 50 H 0.061 0.939 51 H 0.029 0.971 52 H -0.001 1.001 53 H 0.038 0.962 54 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.284 8.444 -5.224 10.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.164 4.164 3 C 0.029 3.971 4 H 0.122 0.878 5 N -0.359 5.359 6 C 0.295 3.705 7 C -0.220 4.220 8 O -0.464 6.464 9 C 0.293 3.707 10 O -0.462 6.462 11 N -0.334 5.334 12 C 0.019 3.981 13 C 0.056 3.944 14 H 0.045 0.955 15 C -0.164 4.164 16 C -0.129 4.129 17 C -0.088 4.088 18 C -0.188 4.188 19 C -0.175 4.175 20 C 0.049 3.951 21 N -0.327 5.327 22 C -0.445 4.445 23 H 0.067 0.933 24 C -0.250 4.250 25 N -0.588 5.588 26 Si 0.903 3.097 27 H -0.197 1.197 28 H -0.217 1.217 29 H -0.230 1.230 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.069 0.931 33 H 0.081 0.919 34 H 0.090 0.910 35 H 0.253 0.747 36 H 0.117 0.883 37 H 0.125 0.875 38 H 0.124 0.876 39 H 0.247 0.753 40 H 0.090 0.910 41 H 0.066 0.934 42 H 0.097 0.903 43 H 0.079 0.921 44 H 0.073 0.927 45 H 0.093 0.907 46 H 0.060 0.940 47 H 0.089 0.911 48 H 0.070 0.930 49 H 0.065 0.935 50 H 0.080 0.920 51 H 0.048 0.952 52 H 0.017 0.983 53 H 0.057 0.943 54 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 2.200 7.523 -5.557 9.608 hybrid contribution 0.859 0.496 0.581 1.149 sum 3.059 8.018 -4.975 9.920 Atomic orbital electron populations 1.21661 0.93914 1.00772 1.02258 1.21865 0.97618 0.93822 1.03058 1.20629 0.90768 0.95456 0.90264 0.87842 1.45926 1.17408 1.56983 1.15598 1.21611 0.80305 0.77265 0.91351 1.21864 1.04800 1.02495 0.92822 1.90721 1.52114 1.60774 1.42782 1.20644 0.90278 0.77766 0.81980 1.90603 1.65892 1.48462 1.41223 1.45949 1.08336 1.56502 1.22604 1.21241 0.79818 0.99146 0.97864 1.20763 0.94163 0.85492 0.94006 0.95478 1.21868 0.95118 1.00440 0.98937 1.21390 1.00599 0.93663 0.97212 1.21058 0.96171 0.95979 0.95609 1.21735 1.01419 0.98983 0.96711 1.21620 0.99337 0.99083 0.97426 1.20803 0.91575 0.93812 0.88867 1.44223 1.55874 1.05783 1.26816 1.19850 1.11524 1.23870 0.89217 0.93314 1.26255 0.95458 1.01644 1.01601 1.70833 1.44122 1.42054 1.01776 0.83415 0.76385 0.75908 0.73961 1.19750 1.21678 1.22956 0.93015 0.92361 0.93145 0.91880 0.91009 0.74727 0.88321 0.87535 0.87563 0.75293 0.91025 0.93383 0.90256 0.92130 0.92733 0.90675 0.93954 0.91115 0.92957 0.93464 0.92042 0.95192 0.98276 0.94331 0.92978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.20 8.52 71.99 0.61 -3.59 16 2 C -0.12 -4.27 5.55 30.60 0.17 -4.10 16 3 C 0.14 4.41 2.67 44.24 0.12 4.52 16 4 H 0.10 3.43 7.58 -2.39 -0.02 3.41 16 5 N -0.71 -18.90 4.90 -446.09 -2.19 -21.08 16 6 C 0.51 12.89 6.51 87.66 0.57 13.46 16 7 C -0.16 -2.37 10.39 71.24 0.74 -1.63 16 8 O -0.58 -19.39 14.24 -3.06 -0.04 -19.43 16 9 C 0.51 17.93 7.22 87.66 0.63 18.56 16 10 O -0.58 -22.20 15.84 -3.05 -0.05 -22.24 16 11 N -0.69 -24.80 3.72 -463.06 -1.72 -26.52 16 12 C 0.14 5.01 4.42 86.38 0.38 5.39 16 13 C 0.16 5.67 3.00 44.83 0.13 5.81 16 14 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 15 C -0.12 -3.60 5.00 30.53 0.15 -3.45 16 16 C -0.09 -2.53 4.71 30.62 0.14 -2.39 16 17 C -0.09 -2.82 0.77 -52.10 -0.04 -2.86 16 18 C -0.13 -3.67 8.48 71.98 0.61 -3.06 16 19 C -0.12 -3.86 7.99 71.98 0.58 -3.29 16 20 C 0.18 7.34 3.34 86.36 0.29 7.63 16 21 N -0.60 -25.36 2.24 -676.02 -1.51 -26.88 16 22 C -0.31 -14.81 6.83 84.03 0.57 -14.24 16 23 H 0.05 2.41 5.97 -2.91 -0.02 2.39 16 24 C -0.05 -2.58 4.78 84.86 0.41 -2.17 16 25 N -0.95 -51.99 12.53 21.65 0.27 -51.72 16 26 Si 1.07 48.46 29.97 68.60 2.06 50.52 16 27 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 28 H -0.29 -12.78 7.11 99.48 0.71 -12.07 16 29 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 30 H 0.05 1.76 7.85 -2.39 -0.02 1.74 16 31 H 0.06 1.80 5.65 -2.38 -0.01 1.79 16 32 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 34 H 0.07 2.81 7.43 -2.39 -0.02 2.79 16 35 H 0.41 10.05 7.63 -92.71 -0.71 9.35 16 36 H 0.10 1.02 7.91 -2.39 -0.02 1.00 16 37 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.41 15.96 6.74 -92.71 -0.63 15.33 16 40 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 41 H 0.05 1.88 7.42 -2.39 -0.02 1.86 16 42 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 43 H 0.06 1.86 6.33 -2.39 -0.02 1.84 16 44 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 45 H 0.07 1.75 8.14 -2.38 -0.02 1.73 16 46 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 47 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 48 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 49 H 0.05 1.73 5.97 -2.39 -0.01 1.72 16 50 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 51 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 52 H 0.00 -0.03 7.78 -2.39 -0.02 -0.05 16 53 H 0.04 1.91 6.52 -2.39 -0.02 1.89 16 54 H 0.26 14.45 6.51 -92.71 -0.60 13.85 16 Total: -1.00 -61.23 406.20 2.61 -58.62 By element: Atomic # 1 Polarization: 44.42 SS G_CDS: -0.27 Total: 44.15 kcal Atomic # 6 Polarization: 8.53 SS G_CDS: 6.07 Total: 14.60 kcal Atomic # 7 Polarization: -121.05 SS G_CDS: -5.15 Total: -126.20 kcal Atomic # 8 Polarization: -41.59 SS G_CDS: -0.09 Total: -41.68 kcal Atomic # 14 Polarization: 48.46 SS G_CDS: 2.06 Total: 50.52 kcal Total: -61.23 2.61 -58.62 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099246760.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.506 kcal (2) G-P(sol) polarization free energy of solvation -61.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds