Wall clock time and date at job start Sat Apr 11 2020 05:50:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53008 * 109.47066 * 2 1 4 4 H 1.09000 * 109.46524 * 304.99484 * 3 2 1 5 5 N 1.46501 * 109.47315 * 64.99474 * 3 2 1 6 6 C 1.34771 * 120.00015 * 275.00463 * 5 3 2 7 7 C 1.50696 * 119.99822 * 180.02562 * 6 5 3 8 8 O 1.21277 * 120.00334 * 359.97438 * 6 5 3 9 9 C 1.50699 * 109.46825 * 185.00036 * 3 2 1 10 10 O 1.21280 * 119.99417 * 239.99411 * 9 3 2 11 11 N 1.34772 * 120.00116 * 59.99664 * 9 3 2 12 12 C 1.46505 * 119.99832 * 179.97438 * 11 9 3 13 13 C 1.53001 * 109.47188 * 179.97438 * 12 11 9 14 14 H 1.09006 * 109.58256 * 59.53980 * 13 12 11 15 15 C 1.53189 * 109.58384 * 179.82096 * 13 12 11 16 16 C 1.53041 * 109.31134 * 174.42367 * 15 13 12 17 17 C 1.53042 * 109.53770 * 298.63515 * 16 15 13 18 18 C 1.53003 * 109.49887 * 181.31443 * 17 16 15 19 19 C 1.52995 * 109.49573 * 301.41085 * 17 16 15 20 20 C 1.53193 * 109.31187 * 61.36327 * 17 16 15 21 21 N 1.46922 * 108.77706 * 305.36664 * 20 17 16 22 22 C 1.36941 * 120.63049 * 233.58778 * 21 20 17 23 23 H 1.07998 * 119.99837 * 149.87391 * 22 21 20 24 24 C 1.38814 * 120.00149 * 329.87726 * 22 21 20 25 25 N 1.31619 * 119.99854 * 344.54348 * 24 22 21 26 26 Si 1.86790 * 120.00118 * 164.54148 * 24 22 21 27 27 H 1.48497 * 109.47149 * 89.99976 * 26 24 22 28 28 H 1.48502 * 109.47127 * 210.00061 * 26 24 22 29 29 H 1.48504 * 109.47413 * 329.99860 * 26 24 22 30 30 H 1.09004 * 109.47116 * 300.00725 * 1 2 3 31 31 H 1.08994 * 109.47069 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46986 * 60.00140 * 1 2 3 33 33 H 1.09004 * 109.47136 * 119.99098 * 2 1 3 34 34 H 1.08994 * 109.47504 * 239.99602 * 2 1 3 35 35 H 0.97002 * 119.99541 * 95.00270 * 5 3 2 36 36 H 1.09004 * 109.47434 * 59.99453 * 7 6 5 37 37 H 1.09005 * 109.47288 * 179.97438 * 7 6 5 38 38 H 1.09001 * 109.47058 * 299.99727 * 7 6 5 39 39 H 0.96991 * 120.00175 * 0.02562 * 11 9 3 40 40 H 1.09006 * 109.47115 * 300.00454 * 12 11 9 41 41 H 1.09005 * 109.46775 * 60.00040 * 12 11 9 42 42 H 1.08998 * 109.50133 * 294.36966 * 15 13 12 43 43 H 1.08996 * 109.50124 * 54.44449 * 15 13 12 44 44 H 1.09004 * 109.46084 * 58.65588 * 16 15 13 45 45 H 1.08997 * 109.46141 * 178.62715 * 16 15 13 46 46 H 1.08997 * 109.46734 * 59.99963 * 18 17 16 47 47 H 1.08993 * 109.46968 * 179.97438 * 18 17 16 48 48 H 1.09009 * 109.46878 * 300.00245 * 18 17 16 49 49 H 1.09000 * 109.47235 * 60.00286 * 19 17 16 50 50 H 1.09001 * 109.46932 * 179.97438 * 19 17 16 51 51 H 1.09000 * 109.47633 * 300.00104 * 19 17 16 52 52 H 1.09004 * 109.58867 * 65.15461 * 20 17 16 53 53 H 1.09003 * 109.58610 * 185.43148 * 20 17 16 54 54 H 0.96999 * 119.99917 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9815 -0.8419 5 7 1.6524 2.0976 1.2517 6 6 0.4351 2.6645 1.3668 7 6 0.0366 3.3388 2.6542 8 8 -0.3393 2.6327 0.4340 9 6 3.5419 1.4443 -0.1238 10 8 4.2216 1.9437 0.7477 11 7 4.1297 0.8911 -1.2031 12 6 5.5898 0.8933 -1.3237 13 6 5.9947 0.2085 -2.6306 14 1 5.5539 0.7406 -3.4737 15 6 7.5210 0.2134 -2.7615 16 6 7.9255 -0.5929 -3.9977 17 6 7.4589 -2.0418 -3.8390 18 6 7.8924 -2.8547 -5.0606 19 6 8.0813 -2.6434 -2.5775 20 6 5.9319 -2.0722 -3.7203 21 7 5.5251 -1.1836 -2.6232 22 6 4.7231 -1.6441 -1.6133 23 1 4.8074 -1.2232 -0.6223 24 6 3.8019 -2.6520 -1.8632 25 7 3.4780 -2.9551 -3.1024 26 14 3.0219 -3.5781 -0.4409 27 1 1.7771 -2.8850 -0.0221 28 1 2.6974 -4.9622 -0.8700 29 1 3.9710 -3.6234 0.7004 30 1 -0.3633 0.5140 0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5137 0.8901 34 1 1.8934 -0.5139 -0.8899 35 1 2.2719 2.1233 1.9977 36 1 0.7280 4.1543 2.8664 37 1 -0.9743 3.7354 2.5589 38 1 0.0679 2.6148 3.4684 39 1 3.5862 0.4921 -1.9003 40 1 5.9528 1.9211 -1.3239 41 1 6.0247 0.3546 -0.4817 42 1 7.8740 1.2394 -2.8649 43 1 7.9638 -0.2360 -1.8727 44 1 7.4623 -0.1572 -4.8831 45 1 9.0098 -0.5707 -4.1070 46 1 8.9787 -2.8304 -5.1463 47 1 7.5603 -3.8865 -4.9469 48 1 7.4474 -2.4262 -5.9587 49 1 7.7708 -2.0646 -1.7076 50 1 7.7484 -3.6752 -2.4646 51 1 9.1678 -2.6189 -2.6611 52 1 5.4859 -1.7283 -4.6536 53 1 5.6018 -3.0897 -3.5108 54 1 2.8346 -3.6596 -3.2770 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099246764.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:50:02 Heat of formation + Delta-G solvation = -84.633890 kcal Electronic energy + Delta-G solvation = -32553.658290 eV Core-core repulsion = 28524.744693 eV Total energy + Delta-G solvation = -4028.913597 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -41.53375 -40.46081 -39.75858 -36.73009 -36.33702 -34.99046 -33.98317 -33.26159 -31.71346 -30.62849 -29.36462 -28.00370 -27.52552 -27.28469 -24.84409 -23.80771 -23.09310 -21.68884 -21.55444 -21.14732 -19.45075 -18.90108 -18.00754 -17.82864 -17.15992 -17.03865 -16.70313 -16.25902 -16.04543 -15.65166 -15.34109 -15.27924 -15.04173 -14.87701 -14.70494 -14.52830 -14.39001 -13.99238 -13.72862 -13.54702 -13.32065 -13.15957 -13.08970 -12.98017 -12.86985 -12.74825 -12.69414 -12.52930 -12.47825 -12.39659 -12.22419 -12.10017 -11.93946 -11.84712 -11.60525 -11.24811 -11.01712 -10.92888 -10.88041 -10.77549 -10.43270 -10.11520 -9.85760 -8.49204 -7.77138 -5.21023 1.42100 1.49689 1.51869 1.55573 1.65682 1.97260 2.52037 2.58430 3.38179 3.58453 3.68450 3.85819 3.94634 3.98986 4.02332 4.05835 4.21947 4.34268 4.35136 4.44138 4.48030 4.55293 4.57865 4.67307 4.70280 4.76246 4.76900 4.88297 4.95022 4.96974 4.99834 5.00669 5.07128 5.11898 5.12039 5.15765 5.18170 5.27306 5.31623 5.37176 5.41738 5.49014 5.54860 5.59589 5.65749 5.76678 5.84858 5.91564 6.49289 6.55289 6.62534 7.20353 7.25516 7.26072 7.95610 8.49145 9.27147 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.014652 B = 0.003869 C = 0.003320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1910.563438 B = 7235.207857 C = 8432.833555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.125 4.125 3 C 0.138 3.862 4 H 0.106 0.894 5 N -0.707 5.707 6 C 0.505 3.495 7 C -0.164 4.164 8 O -0.582 6.582 9 C 0.508 3.492 10 O -0.579 6.579 11 N -0.688 5.688 12 C 0.140 3.860 13 C 0.160 3.840 14 H 0.029 0.971 15 C -0.124 4.124 16 C -0.091 4.091 17 C -0.092 4.092 18 C -0.129 4.129 19 C -0.117 4.117 20 C 0.196 3.804 21 N -0.594 5.594 22 C -0.226 4.226 23 H 0.064 0.936 24 C -0.025 4.025 25 N -0.922 5.922 26 Si 0.917 3.083 27 H -0.268 1.268 28 H -0.307 1.307 29 H -0.287 1.287 30 H 0.057 0.943 31 H 0.046 0.954 32 H 0.053 0.947 33 H 0.059 0.941 34 H 0.073 0.927 35 H 0.415 0.585 36 H 0.108 0.892 37 H 0.095 0.905 38 H 0.108 0.892 39 H 0.412 0.588 40 H 0.074 0.926 41 H 0.051 0.949 42 H 0.078 0.922 43 H 0.061 0.939 44 H 0.052 0.948 45 H 0.072 0.928 46 H 0.067 0.933 47 H 0.040 0.960 48 H 0.049 0.951 49 H 0.048 0.952 50 H 0.028 0.972 51 H 0.058 0.942 52 H -0.007 1.007 53 H 0.048 0.952 54 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.826 8.700 4.898 10.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.164 4.164 3 C 0.029 3.971 4 H 0.124 0.876 5 N -0.361 5.361 6 C 0.295 3.705 7 C -0.223 4.223 8 O -0.463 6.463 9 C 0.294 3.706 10 O -0.460 6.460 11 N -0.337 5.337 12 C 0.016 3.984 13 C 0.054 3.946 14 H 0.046 0.954 15 C -0.163 4.163 16 C -0.129 4.129 17 C -0.094 4.094 18 C -0.187 4.187 19 C -0.174 4.174 20 C 0.070 3.930 21 N -0.318 5.318 22 C -0.357 4.357 23 H 0.081 0.919 24 C -0.221 4.221 25 N -0.568 5.568 26 Si 0.748 3.252 27 H -0.194 1.194 28 H -0.234 1.234 29 H -0.213 1.213 30 H 0.076 0.924 31 H 0.065 0.935 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.092 0.908 35 H 0.253 0.747 36 H 0.127 0.873 37 H 0.114 0.886 38 H 0.127 0.873 39 H 0.249 0.751 40 H 0.092 0.908 41 H 0.069 0.931 42 H 0.097 0.903 43 H 0.080 0.920 44 H 0.071 0.929 45 H 0.091 0.909 46 H 0.086 0.914 47 H 0.059 0.941 48 H 0.068 0.932 49 H 0.067 0.933 50 H 0.047 0.953 51 H 0.077 0.923 52 H 0.011 0.989 53 H 0.067 0.933 54 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 2.650 8.924 4.797 10.472 hybrid contribution -0.694 -1.431 0.432 1.648 sum 1.957 7.493 5.229 9.344 Atomic orbital electron populations 1.21660 0.94003 1.00557 1.02402 1.21875 0.97555 0.94017 1.02960 1.20636 0.90928 0.95273 0.90272 0.87604 1.45835 1.17423 1.57128 1.15682 1.21592 0.80315 0.77290 0.91344 1.21924 1.04725 1.02464 0.93152 1.90716 1.52093 1.60619 1.42842 1.20608 0.90187 0.77802 0.82011 1.90606 1.65856 1.48370 1.41218 1.45987 1.08489 1.56615 1.22615 1.21303 0.79644 0.99441 0.98002 1.20867 0.94191 0.85570 0.94014 0.95371 1.21943 0.95145 1.00336 0.98876 1.21388 1.00398 0.93864 0.97246 1.21152 0.97146 0.95741 0.95343 1.21710 1.01115 0.98983 0.96855 1.21615 0.99113 0.99061 0.97614 1.20565 0.89489 0.94633 0.88263 1.44180 1.56301 1.05349 1.25971 1.19133 1.10497 1.16575 0.89456 0.91869 1.25308 0.98197 1.02404 0.96222 1.70111 1.35369 1.32854 1.18510 0.86089 0.79675 0.78447 0.81001 1.19393 1.23446 1.21264 0.92396 0.93488 0.92755 0.92222 0.90821 0.74721 0.87330 0.88568 0.87349 0.75081 0.90811 0.93086 0.90318 0.91989 0.92907 0.90937 0.91366 0.94074 0.93157 0.93312 0.95328 0.92275 0.98936 0.93322 0.94582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.17 8.52 71.98 0.61 -3.56 16 2 C -0.13 -4.23 5.53 30.60 0.17 -4.06 16 3 C 0.14 4.33 2.67 44.25 0.12 4.44 16 4 H 0.11 3.42 7.58 -2.39 -0.02 3.40 16 5 N -0.71 -18.66 4.90 -446.10 -2.19 -20.85 16 6 C 0.51 12.77 6.51 87.66 0.57 13.34 16 7 C -0.16 -2.40 10.32 71.23 0.74 -1.66 16 8 O -0.58 -19.20 14.23 -3.02 -0.04 -19.24 16 9 C 0.51 17.55 7.22 87.66 0.63 18.19 16 10 O -0.58 -21.71 15.84 -3.03 -0.05 -21.76 16 11 N -0.69 -24.31 3.71 -463.04 -1.72 -26.03 16 12 C 0.14 4.78 4.42 86.38 0.38 5.16 16 13 C 0.16 5.58 3.00 44.97 0.14 5.71 16 14 H 0.03 1.03 8.14 -2.38 -0.02 1.01 16 15 C -0.12 -3.57 5.03 30.67 0.15 -3.41 16 16 C -0.09 -2.58 4.71 30.62 0.14 -2.44 16 17 C -0.09 -3.06 0.77 -52.10 -0.04 -3.10 16 18 C -0.13 -3.73 8.48 71.98 0.61 -3.12 16 19 C -0.12 -3.86 7.99 71.98 0.57 -3.29 16 20 C 0.20 8.43 3.95 86.36 0.34 8.77 16 21 N -0.59 -25.19 2.41 -675.23 -1.63 -26.82 16 22 C -0.23 -10.58 7.05 84.03 0.59 -9.99 16 23 H 0.06 3.04 5.82 -2.91 -0.02 3.02 16 24 C -0.02 -1.24 4.94 84.86 0.42 -0.82 16 25 N -0.92 -49.48 11.25 21.65 0.24 -49.24 16 26 Si 0.92 42.10 29.56 68.60 2.03 44.13 16 27 H -0.27 -11.74 7.09 99.48 0.71 -11.03 16 28 H -0.31 -14.79 7.11 99.48 0.71 -14.08 16 29 H -0.29 -13.26 7.11 99.48 0.71 -12.56 16 30 H 0.06 1.79 5.65 -2.38 -0.01 1.77 16 31 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.05 1.81 7.85 -2.39 -0.02 1.80 16 33 H 0.06 2.06 8.14 -2.38 -0.02 2.04 16 34 H 0.07 2.82 7.41 -2.39 -0.02 2.80 16 35 H 0.42 9.91 7.79 -92.71 -0.72 9.19 16 36 H 0.11 1.18 8.14 -2.38 -0.02 1.16 16 37 H 0.10 1.36 8.12 -2.38 -0.02 1.34 16 38 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.41 15.63 6.81 -92.71 -0.63 15.00 16 40 H 0.07 2.27 8.14 -2.38 -0.02 2.25 16 41 H 0.05 1.93 7.38 -2.38 -0.02 1.91 16 42 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 43 H 0.06 1.87 6.34 -2.39 -0.02 1.85 16 44 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 45 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 46 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 47 H 0.04 1.25 8.14 -2.39 -0.02 1.24 16 48 H 0.05 1.43 8.14 -2.38 -0.02 1.41 16 49 H 0.05 1.77 5.97 -2.39 -0.01 1.76 16 50 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 51 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 52 H -0.01 -0.35 8.14 -2.38 -0.02 -0.37 16 53 H 0.05 2.45 6.18 -2.39 -0.01 2.44 16 54 H 0.24 13.20 8.31 -92.71 -0.77 12.43 16 Total: -1.00 -60.37 407.65 2.33 -58.04 By element: Atomic # 1 Polarization: 42.08 SS G_CDS: -0.46 Total: 41.62 kcal Atomic # 6 Polarization: 13.99 SS G_CDS: 6.15 Total: 20.14 kcal Atomic # 7 Polarization: -117.64 SS G_CDS: -5.29 Total: -122.93 kcal Atomic # 8 Polarization: -40.91 SS G_CDS: -0.09 Total: -41.00 kcal Atomic # 14 Polarization: 42.10 SS G_CDS: 2.03 Total: 44.13 kcal Total: -60.37 2.33 -58.04 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099246764.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.597 kcal (2) G-P(sol) polarization free energy of solvation -60.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds