Wall clock time and date at job start Sat Apr 11 2020 05:50:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.46975 * 2 1 4 4 H 1.08995 * 109.47176 * 305.00115 * 3 2 1 5 5 C 1.52997 * 109.47099 * 65.00108 * 3 2 1 6 6 C 1.50699 * 109.47114 * 184.99958 * 3 2 1 7 7 O 1.21286 * 119.99798 * 0.02562 * 6 3 2 8 8 N 1.34773 * 120.00096 * 179.97438 * 6 3 2 9 9 C 1.46496 * 119.99906 * 180.02562 * 8 6 3 10 10 C 1.52998 * 109.47252 * 179.97438 * 9 8 6 11 11 C 1.53005 * 109.47426 * 179.97438 * 10 9 8 12 12 H 1.08996 * 110.77910 * 51.75739 * 11 10 9 13 13 C 1.54932 * 110.72462 * 288.50551 * 11 10 9 14 14 N 1.48540 * 103.22417 * 204.22665 * 13 11 10 15 15 C 1.46899 * 110.99535 * 159.71991 * 14 13 11 16 16 C 1.50702 * 109.46614 * 169.99894 * 15 14 13 17 17 O 1.21287 * 120.00418 * 0.02562 * 16 15 14 18 18 N 1.34784 * 119.99892 * 179.97438 * 16 15 14 19 19 C 1.37097 * 119.99882 * 179.97438 * 18 16 15 20 20 H 1.08003 * 120.00143 * 0.02562 * 19 18 16 21 21 C 1.38950 * 119.99676 * 180.02562 * 19 18 16 22 22 N 1.31404 * 120.00354 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99817 * 180.02562 * 21 19 18 24 24 H 1.48510 * 109.46922 * 90.00374 * 23 21 19 25 25 H 1.48497 * 109.47479 * 210.00238 * 23 21 19 26 26 H 1.48495 * 109.47406 * 330.00595 * 23 21 19 27 27 C 1.48115 * 105.86678 * 39.17200 * 14 13 11 28 28 C 1.54000 * 106.94761 * 334.74612 * 27 14 13 29 29 H 1.09002 * 110.31026 * 120.11128 * 28 27 14 30 30 C 1.53000 * 110.30761 * 242.18175 * 28 27 14 31 31 H 1.08994 * 109.47035 * 59.99869 * 1 2 3 32 32 H 1.09006 * 109.46819 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.46791 * 300.00019 * 1 2 3 34 34 H 1.09001 * 109.46791 * 239.99981 * 2 1 3 35 35 H 1.09004 * 109.46881 * 120.00110 * 2 1 3 36 36 H 1.09004 * 109.47226 * 59.99805 * 5 3 2 37 37 H 1.08998 * 109.47224 * 179.97438 * 5 3 2 38 38 H 1.08999 * 109.46974 * 300.00048 * 5 3 2 39 39 H 0.96994 * 119.99737 * 0.02562 * 8 6 3 40 40 H 1.09004 * 109.47292 * 60.00109 * 9 8 6 41 41 H 1.09004 * 109.46969 * 299.99997 * 9 8 6 42 42 H 1.09004 * 109.46842 * 59.99884 * 10 9 8 43 43 H 1.08998 * 109.47265 * 300.00622 * 10 9 8 44 44 H 1.09006 * 110.66684 * 322.65916 * 13 11 10 45 45 H 1.09002 * 110.67045 * 85.79087 * 13 11 10 46 46 H 1.09005 * 109.47484 * 289.99380 * 15 14 13 47 47 H 1.08995 * 109.47600 * 50.00198 * 15 14 13 48 48 H 0.97001 * 119.99904 * 0.02562 * 18 16 15 49 49 H 0.97002 * 120.00135 * 179.97438 * 22 21 19 50 50 H 1.08997 * 109.99953 * 215.41588 * 27 14 13 51 51 H 1.09000 * 109.95079 * 94.04469 * 27 14 13 52 52 H 1.09007 * 109.46832 * 177.21170 * 30 28 27 53 53 H 1.08998 * 109.47110 * 297.20421 * 30 28 27 54 54 H 1.08994 * 109.47572 * 57.20956 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6353 2.1265 1.3073 6 6 3.5419 1.4444 -0.1238 7 8 4.1450 0.3952 -0.2046 8 7 4.2148 2.6119 -0.1458 9 6 5.6748 2.6136 -0.2667 10 6 6.1847 4.0561 -0.2679 11 6 7.7096 4.0580 -0.3936 12 1 8.0286 3.4505 -1.2405 13 6 8.3684 3.5601 0.9174 14 7 9.7220 4.1701 0.8704 15 6 10.3233 4.2205 2.2098 16 6 11.7740 4.6118 2.0945 17 8 12.2592 4.8279 1.0041 18 7 12.5322 4.7226 3.2034 19 6 13.8522 5.0781 3.0985 20 1 14.2843 5.2697 2.1274 21 6 14.6339 5.1918 4.2416 22 7 14.1083 4.9582 5.4230 23 14 16.4322 5.6768 4.0988 24 1 16.5533 7.1553 4.1698 25 1 17.2003 5.0633 5.2117 26 1 16.9726 5.1978 2.8013 27 6 9.5332 5.5328 0.3215 28 6 8.2460 5.5021 -0.5234 29 1 7.5187 6.2126 -0.1307 30 6 8.5630 5.8214 -1.9857 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5139 0.8900 36 1 2.0699 1.5875 2.1492 37 1 1.9990 3.1541 1.3076 38 1 0.5490 2.1252 1.3969 39 1 3.7325 3.4509 -0.0816 40 1 5.9629 2.1261 -1.1982 41 1 6.1097 2.0748 0.5751 42 1 5.8967 4.5440 0.6633 43 1 5.7497 4.5946 -1.1098 44 1 7.8152 3.9177 1.7859 45 1 8.4367 2.4723 0.9246 46 1 9.7958 4.9558 2.8175 47 1 10.2477 3.2397 2.6792 48 1 12.1442 4.5502 4.0755 49 1 14.6541 5.0373 6.2210 50 1 10.3827 5.8030 -0.3057 51 1 9.4261 6.2500 1.1353 52 1 7.6518 5.7475 -2.5795 53 1 8.9628 6.8328 -2.0583 54 1 9.2999 5.1115 -2.3612 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001102678048.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:50:17 Heat of formation + Delta-G solvation = -123.041327 kcal Electronic energy + Delta-G solvation = -29351.182698 eV Core-core repulsion = 25320.603629 eV Total energy + Delta-G solvation = -4030.579069 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.06346 -40.70030 -39.52127 -36.74752 -36.23341 -35.92373 -34.53914 -33.25278 -32.66005 -30.65584 -29.51124 -27.99129 -26.89253 -26.27854 -25.52202 -23.63342 -22.57400 -21.75625 -21.28939 -20.79800 -20.44385 -19.81914 -18.06554 -17.71383 -17.15063 -16.98522 -16.68297 -16.49708 -16.34478 -15.87563 -15.59333 -15.45627 -15.19480 -14.96790 -14.60016 -14.53520 -14.39428 -14.04607 -13.74909 -13.63819 -13.54875 -13.52384 -13.02363 -12.98510 -12.93664 -12.87274 -12.59804 -12.52682 -12.48021 -12.43346 -12.33668 -12.13833 -11.95463 -11.71064 -11.61869 -11.57155 -11.49804 -11.45505 -11.33113 -10.70395 -10.33429 -10.06048 -10.01476 -9.26895 -8.47119 -5.95963 1.36946 1.40315 1.53437 1.66953 2.05203 2.23067 2.28223 2.84434 3.19130 3.36840 3.62201 3.66026 3.72945 3.85543 3.89765 4.00862 4.15290 4.24005 4.29311 4.33054 4.40987 4.43693 4.48720 4.51508 4.53896 4.55596 4.62687 4.66731 4.69748 4.74927 4.76648 4.91856 4.97840 4.98960 5.02732 5.06127 5.14198 5.16221 5.22925 5.24093 5.24760 5.34323 5.38915 5.39916 5.48780 5.51329 5.52682 5.88368 6.03068 6.12413 6.59743 6.60593 7.12572 7.30397 7.55881 8.12375 8.70424 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.019407 B = 0.001719 C = 0.001625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.425210 B =16287.749380 C =17231.370330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.108 4.108 3 C -0.104 4.104 4 H 0.121 0.879 5 C -0.143 4.143 6 C 0.507 3.493 7 O -0.592 6.592 8 N -0.716 5.716 9 C 0.119 3.881 10 C -0.103 4.103 11 C -0.074 4.074 12 H 0.079 0.921 13 C 0.036 3.964 14 N -0.519 5.519 15 C 0.050 3.950 16 C 0.441 3.559 17 O -0.616 6.616 18 N -0.576 5.576 19 C -0.334 4.334 20 H 0.077 0.923 21 C -0.013 4.013 22 N -0.921 5.921 23 Si 0.993 3.007 24 H -0.270 1.270 25 H -0.270 1.270 26 H -0.274 1.274 27 C 0.046 3.954 28 C -0.087 4.087 29 H 0.097 0.903 30 C -0.138 4.138 31 H 0.065 0.935 32 H 0.055 0.945 33 H 0.069 0.931 34 H 0.050 0.950 35 H 0.049 0.951 36 H 0.046 0.954 37 H 0.076 0.924 38 H 0.087 0.913 39 H 0.417 0.583 40 H 0.054 0.946 41 H 0.052 0.948 42 H 0.085 0.915 43 H 0.094 0.906 44 H 0.060 0.940 45 H 0.078 0.922 46 H 0.070 0.930 47 H 0.104 0.896 48 H 0.395 0.605 49 H 0.277 0.723 50 H 0.052 0.948 51 H 0.033 0.967 52 H 0.078 0.922 53 H 0.052 0.948 54 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.133 -0.892 -8.826 32.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.146 4.146 3 C -0.125 4.125 4 H 0.139 0.861 5 C -0.200 4.200 6 C 0.294 3.706 7 O -0.473 6.473 8 N -0.369 5.369 9 C -0.005 4.005 10 C -0.141 4.141 11 C -0.094 4.094 12 H 0.097 0.903 13 C -0.091 4.091 14 N -0.244 5.244 15 C -0.082 4.082 16 C 0.228 3.772 17 O -0.502 6.502 18 N -0.214 5.214 19 C -0.463 4.463 20 H 0.095 0.905 21 C -0.212 4.212 22 N -0.562 5.562 23 Si 0.817 3.183 24 H -0.195 1.195 25 H -0.195 1.195 26 H -0.199 1.199 27 C -0.082 4.082 28 C -0.106 4.106 29 H 0.116 0.884 30 C -0.195 4.195 31 H 0.084 0.916 32 H 0.074 0.926 33 H 0.088 0.912 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.065 0.935 37 H 0.095 0.905 38 H 0.106 0.894 39 H 0.254 0.746 40 H 0.073 0.927 41 H 0.071 0.929 42 H 0.104 0.896 43 H 0.113 0.887 44 H 0.078 0.922 45 H 0.096 0.904 46 H 0.087 0.913 47 H 0.122 0.878 48 H 0.229 0.771 49 H 0.087 0.913 50 H 0.071 0.929 51 H 0.051 0.949 52 H 0.097 0.903 53 H 0.072 0.928 54 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -29.919 -1.777 -9.729 31.512 hybrid contribution 0.827 0.642 1.203 1.595 sum -29.092 -1.135 -8.526 30.337 Atomic orbital electron populations 1.21813 0.93501 1.02306 1.02922 1.21333 0.96978 0.94581 1.01713 1.21394 0.89301 0.99368 1.02486 0.86092 1.21850 1.03489 1.00572 0.94130 1.21386 0.91420 0.83163 0.74592 1.90703 1.71641 1.33400 1.51512 1.45938 1.07653 1.09106 1.74162 1.21315 0.79867 0.98083 1.01228 1.21684 0.93185 0.94734 1.04500 1.22010 0.94562 0.95720 0.97111 0.90251 1.23453 0.87530 0.99957 0.98160 1.64382 1.20994 1.18789 1.20192 1.21914 0.91602 1.02851 0.91818 1.20803 0.89475 0.82710 0.84172 1.90476 1.75369 1.56077 1.28237 1.41935 1.09989 1.61404 1.08029 1.19657 0.86816 1.45294 0.94569 0.90464 1.26031 1.04340 0.96868 0.93995 1.69671 1.38861 1.49383 0.98285 0.84927 0.76820 0.78597 0.77973 1.19505 1.19463 1.19919 1.22944 0.98317 0.89023 0.97890 1.22030 0.95138 0.97135 0.96276 0.88448 1.21787 1.01893 1.01071 0.94751 0.91602 0.92612 0.91232 0.93147 0.93177 0.93495 0.90471 0.89417 0.74590 0.92735 0.92914 0.89632 0.88712 0.92226 0.90357 0.91254 0.87770 0.77098 0.91311 0.92918 0.94903 0.90288 0.92847 0.94075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.67 71.98 0.70 -0.48 16 2 C -0.11 -1.45 4.75 30.60 0.15 -1.31 16 3 C -0.10 -1.08 2.72 -11.54 -0.03 -1.11 16 4 H 0.12 0.68 8.14 -2.39 -0.02 0.66 16 5 C -0.14 -0.92 8.84 71.98 0.64 -0.28 16 6 C 0.51 8.99 7.15 87.66 0.63 9.62 16 7 O -0.59 -16.86 15.92 -3.05 -0.05 -16.91 16 8 N -0.72 -8.79 5.45 -463.06 -2.52 -11.32 16 9 C 0.12 1.84 5.56 86.38 0.48 2.32 16 10 C -0.10 -1.16 4.70 30.60 0.14 -1.02 16 11 C -0.07 -1.39 2.58 -9.59 -0.02 -1.41 16 12 H 0.08 1.66 7.86 -2.39 -0.02 1.64 16 13 C 0.04 0.86 5.37 86.65 0.47 1.33 16 14 N -0.52 -17.56 4.91 -886.96 -4.35 -21.91 16 15 C 0.05 1.82 5.28 85.56 0.45 2.27 16 16 C 0.44 21.98 7.61 87.66 0.67 22.64 16 17 O -0.62 -35.53 14.87 -3.05 -0.05 -35.58 16 18 N -0.58 -30.60 5.29 -306.98 -1.62 -32.22 16 19 C -0.33 -19.49 9.68 84.04 0.81 -18.68 16 20 H 0.08 4.81 7.16 -2.91 -0.02 4.79 16 21 C -0.01 -0.70 5.50 84.93 0.47 -0.23 16 22 N -0.92 -50.58 13.05 21.66 0.28 -50.29 16 23 Si 0.99 43.79 29.55 68.60 2.03 45.82 16 24 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 25 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 26 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 27 C 0.05 1.46 5.54 86.41 0.48 1.94 16 28 C -0.09 -1.80 3.16 -9.91 -0.03 -1.83 16 29 H 0.10 1.56 7.85 -2.39 -0.02 1.54 16 30 C -0.14 -2.71 8.88 71.98 0.64 -2.07 16 31 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 32 H 0.05 0.47 8.14 -2.38 -0.02 0.45 16 33 H 0.07 0.40 6.56 -2.39 -0.02 0.38 16 34 H 0.05 0.86 7.95 -2.39 -0.02 0.85 16 35 H 0.05 0.84 8.14 -2.38 -0.02 0.82 16 36 H 0.05 0.46 8.14 -2.38 -0.02 0.44 16 37 H 0.08 0.24 7.56 -2.39 -0.02 0.22 16 38 H 0.09 0.30 6.56 -2.39 -0.02 0.29 16 39 H 0.42 2.12 7.89 -92.71 -0.73 1.39 16 40 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.05 1.02 7.66 -2.38 -0.02 1.00 16 42 H 0.09 0.78 7.99 -2.39 -0.02 0.76 16 43 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 44 H 0.06 1.23 7.82 -2.38 -0.02 1.21 16 45 H 0.08 1.91 8.12 -2.39 -0.02 1.89 16 46 H 0.07 2.25 7.74 -2.38 -0.02 2.23 16 47 H 0.10 3.45 8.08 -2.39 -0.02 3.43 16 48 H 0.40 19.92 7.90 -92.71 -0.73 19.19 16 49 H 0.28 14.23 8.31 -92.71 -0.77 13.46 16 50 H 0.05 2.07 7.08 -2.39 -0.02 2.05 16 51 H 0.03 1.04 7.53 -2.39 -0.02 1.03 16 52 H 0.08 1.11 8.14 -2.38 -0.02 1.09 16 53 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 54 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 Total: -1.00 -78.37 426.43 -0.24 -78.61 By element: Atomic # 1 Polarization: 32.67 SS G_CDS: -0.58 Total: 32.08 kcal Atomic # 6 Polarization: 5.09 SS G_CDS: 6.62 Total: 11.72 kcal Atomic # 7 Polarization: -107.52 SS G_CDS: -8.22 Total: -115.74 kcal Atomic # 8 Polarization: -52.40 SS G_CDS: -0.09 Total: -52.49 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Total: -78.37 -0.24 -78.61 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001102678048.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.432 kcal (2) G-P(sol) polarization free energy of solvation -78.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds