Wall clock time and date at job start Sat Apr 11 2020 05:50:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.46672 * 2 1 4 4 H 1.09003 * 109.47035 * 55.00036 * 3 2 1 5 5 C 1.53002 * 109.47077 * 294.99653 * 3 2 1 6 6 C 1.50698 * 109.46990 * 174.99901 * 3 2 1 7 7 O 1.21289 * 119.99973 * 359.97438 * 6 3 2 8 8 N 1.34775 * 120.00216 * 180.02562 * 6 3 2 9 9 C 1.48147 * 127.83847 * 0.02562 * 8 6 3 10 10 C 1.54382 * 104.61909 * 140.41611 * 9 8 6 11 11 H 1.08998 * 110.43429 * 142.78262 * 10 9 8 12 12 C 1.53006 * 110.34260 * 265.00037 * 10 9 8 13 13 C 1.54285 * 104.95753 * 23.86868 * 10 9 8 14 14 H 1.08999 * 110.34323 * 241.02114 * 13 10 9 15 15 C 1.53005 * 110.34139 * 118.87509 * 13 10 9 16 16 C 1.52998 * 109.47042 * 176.47599 * 15 13 10 17 17 N 1.46898 * 109.47159 * 179.97438 * 16 15 13 18 18 C 1.46904 * 111.00201 * 179.97438 * 17 16 15 19 19 C 1.50697 * 109.46892 * 179.97438 * 18 17 16 20 20 O 1.21291 * 120.00763 * 359.72740 * 19 18 17 21 21 N 1.34784 * 119.99774 * 179.97438 * 19 18 17 22 22 C 1.37092 * 119.99968 * 179.72830 * 21 19 18 23 23 H 1.08005 * 120.00127 * 359.97438 * 22 21 19 24 24 C 1.38955 * 120.00107 * 179.97438 * 22 21 19 25 25 N 1.31411 * 120.00272 * 179.97438 * 24 22 21 26 26 Si 1.86803 * 119.99631 * 0.02562 * 24 22 21 27 27 H 1.48491 * 109.47423 * 89.99791 * 26 24 22 28 28 H 1.48505 * 109.46968 * 209.99733 * 26 24 22 29 29 H 1.48504 * 109.47133 * 329.99196 * 26 24 22 30 30 C 1.48317 * 127.77135 * 179.97438 * 8 6 3 31 31 H 1.08995 * 109.47239 * 60.00439 * 1 2 3 32 32 H 1.09005 * 109.47086 * 180.02562 * 1 2 3 33 33 H 1.08994 * 109.47462 * 300.00109 * 1 2 3 34 34 H 1.08994 * 109.47462 * 239.99890 * 2 1 3 35 35 H 1.09001 * 109.46942 * 119.99870 * 2 1 3 36 36 H 1.09002 * 109.47060 * 60.00403 * 5 3 2 37 37 H 1.08995 * 109.46741 * 180.02562 * 5 3 2 38 38 H 1.08994 * 109.46963 * 300.00336 * 5 3 2 39 39 H 1.09006 * 110.40390 * 21.63424 * 9 8 6 40 40 H 1.08998 * 110.41093 * 259.20456 * 9 8 6 41 41 H 1.09005 * 109.46973 * 175.53448 * 12 10 9 42 42 H 1.08997 * 109.47115 * 295.53351 * 12 10 9 43 43 H 1.08999 * 109.47062 * 55.53737 * 12 10 9 44 44 H 1.08999 * 109.47398 * 56.46988 * 15 13 10 45 45 H 1.08999 * 109.46477 * 296.47233 * 15 13 10 46 46 H 1.08999 * 109.47523 * 59.99466 * 16 15 13 47 47 H 1.09004 * 109.47198 * 299.99675 * 16 15 13 48 48 H 1.00907 * 110.99840 * 303.94876 * 17 16 15 49 49 H 1.09001 * 109.46900 * 60.00109 * 18 17 16 50 50 H 1.08993 * 109.47169 * 299.99830 * 18 17 16 51 51 H 0.97005 * 119.99846 * 359.72750 * 21 19 18 52 52 H 0.97000 * 119.99725 * 180.02562 * 25 24 22 53 53 H 1.08991 * 110.38797 * 100.79028 * 30 8 6 54 54 H 1.09003 * 110.50642 * 338.29978 * 30 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 0.8418 5 6 1.6352 2.1266 -1.3074 6 6 3.5418 1.4445 0.1239 7 8 4.1450 0.3953 0.2047 8 7 4.2147 2.6120 0.1459 9 6 3.6593 3.9828 0.0612 10 6 4.4985 4.8057 1.0621 11 1 4.6774 5.8086 0.6746 12 6 3.7904 4.8783 2.4165 13 6 5.8293 4.0362 1.1932 14 1 5.9795 3.7116 2.2229 15 6 6.9976 4.9126 0.7372 16 6 8.3134 4.1636 0.9575 17 7 9.4351 5.0048 0.5191 18 6 10.7179 4.3167 0.7167 19 6 11.8422 5.2082 0.2561 20 8 11.5986 6.3065 -0.1972 21 7 13.1182 4.7830 0.3433 22 6 14.1407 5.5918 -0.0809 23 1 13.9237 6.5695 -0.4853 24 6 15.4563 5.1537 0.0095 25 7 16.4364 5.9287 -0.3976 26 14 15.8315 3.4624 0.7083 27 1 15.8354 2.4628 -0.3898 28 1 17.1637 3.4823 1.3643 29 1 14.7939 3.0977 1.7061 30 6 5.6795 2.8143 0.2614 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5138 0.8899 34 1 1.8934 -0.5138 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 0.5488 2.1252 -1.3970 37 1 1.9988 3.1541 -1.3075 38 1 2.0698 1.5875 -2.1491 39 1 2.6090 3.9860 0.3529 40 1 3.7756 4.3784 -0.9478 41 1 4.4297 5.3933 3.1336 42 1 2.8532 5.4241 2.3078 43 1 3.5840 3.8692 2.7731 44 1 7.0050 5.8374 1.3141 45 1 6.8851 5.1458 -0.3216 46 1 8.3061 3.2388 0.3806 47 1 8.4259 3.9304 2.0164 48 1 9.3206 5.2877 -0.4427 49 1 10.7273 3.3926 0.1387 50 1 10.8470 4.0854 1.7739 51 1 13.3131 3.9048 0.7062 52 1 17.3547 5.6226 -0.3348 53 1 6.1118 3.0265 -0.7163 54 1 6.1522 1.9379 0.7049 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001103902589.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:50:30 Heat of formation + Delta-G solvation = -113.132052 kcal Electronic energy + Delta-G solvation = -29402.210281 eV Core-core repulsion = 25372.060910 eV Total energy + Delta-G solvation = -4030.149370 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.42477 -40.31951 -39.37448 -37.07616 -36.42599 -35.93904 -34.15758 -33.74836 -32.63371 -30.88534 -29.31269 -27.64401 -27.49483 -26.22425 -25.50958 -24.15090 -22.46353 -21.83475 -21.30072 -20.86624 -20.24348 -19.99021 -18.12621 -17.76757 -17.18475 -17.12976 -16.71571 -16.54880 -16.10617 -15.88329 -15.68708 -15.28848 -15.04332 -14.83356 -14.61807 -14.56604 -14.43026 -14.17759 -14.10751 -13.84711 -13.56052 -13.41742 -13.32083 -13.05180 -13.02159 -12.88695 -12.77489 -12.58640 -12.43957 -12.42894 -12.30619 -12.07800 -11.99265 -11.72963 -11.62831 -11.53918 -11.52304 -11.46012 -11.38340 -10.75356 -10.44671 -10.26167 -9.75461 -9.32918 -8.42525 -6.03391 1.29655 1.34252 1.43376 1.58617 1.93863 1.94124 2.21730 2.71059 3.13906 3.32232 3.46723 3.59318 3.72758 3.83082 3.86375 3.96669 4.12884 4.18632 4.26941 4.33718 4.35052 4.37486 4.46596 4.49084 4.51875 4.57312 4.60257 4.61423 4.66243 4.71131 4.72429 4.85716 4.90842 4.93886 4.95495 4.99886 5.09243 5.10765 5.16976 5.19526 5.27829 5.31387 5.35548 5.36330 5.48694 5.51682 5.55454 5.89837 6.05103 6.40332 6.55121 6.58530 6.86550 7.11294 7.38265 7.94432 8.75029 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.020893 B = 0.001693 C = 0.001617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.863038 B =16533.159286 C =17313.433397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.106 4.106 3 C -0.100 4.100 4 H 0.117 0.883 5 C -0.147 4.147 6 C 0.527 3.473 7 O -0.595 6.595 8 N -0.621 5.621 9 C 0.100 3.900 10 C -0.100 4.100 11 H 0.103 0.897 12 C -0.141 4.141 13 C -0.085 4.085 14 H 0.080 0.920 15 C -0.098 4.098 16 C 0.058 3.942 17 N -0.686 5.686 18 C 0.061 3.939 19 C 0.448 3.552 20 O -0.613 6.613 21 N -0.591 5.591 22 C -0.331 4.331 23 H 0.056 0.944 24 C -0.013 4.013 25 N -0.933 5.933 26 Si 0.964 3.036 27 H -0.258 1.258 28 H -0.274 1.274 29 H -0.233 1.233 30 C 0.103 3.897 31 H 0.070 0.930 32 H 0.057 0.943 33 H 0.065 0.935 34 H 0.050 0.950 35 H 0.049 0.951 36 H 0.090 0.910 37 H 0.076 0.924 38 H 0.046 0.954 39 H 0.104 0.896 40 H 0.087 0.913 41 H 0.057 0.943 42 H 0.073 0.927 43 H 0.044 0.956 44 H 0.076 0.924 45 H 0.069 0.931 46 H 0.034 0.966 47 H 0.075 0.925 48 H 0.345 0.655 49 H 0.073 0.927 50 H 0.111 0.889 51 H 0.389 0.611 52 H 0.279 0.721 53 H 0.073 0.927 54 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -36.521 -10.447 4.209 38.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.144 4.144 3 C -0.121 4.121 4 H 0.134 0.866 5 C -0.204 4.204 6 C 0.318 3.682 7 O -0.476 6.476 8 N -0.354 5.354 9 C -0.022 4.022 10 C -0.119 4.119 11 H 0.121 0.879 12 C -0.198 4.198 13 C -0.105 4.105 14 H 0.098 0.902 15 C -0.136 4.136 16 C -0.070 4.070 17 N -0.319 5.319 18 C -0.072 4.072 19 C 0.236 3.764 20 O -0.498 6.498 21 N -0.233 5.233 22 C -0.460 4.460 23 H 0.074 0.926 24 C -0.212 4.212 25 N -0.574 5.574 26 Si 0.784 3.216 27 H -0.182 1.182 28 H -0.199 1.199 29 H -0.156 1.156 30 C -0.019 4.019 31 H 0.088 0.912 32 H 0.076 0.924 33 H 0.084 0.916 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.109 0.891 37 H 0.095 0.905 38 H 0.065 0.935 39 H 0.122 0.878 40 H 0.105 0.895 41 H 0.076 0.924 42 H 0.092 0.908 43 H 0.063 0.937 44 H 0.094 0.906 45 H 0.088 0.912 46 H 0.053 0.947 47 H 0.094 0.906 48 H 0.163 0.837 49 H 0.091 0.909 50 H 0.129 0.871 51 H 0.225 0.775 52 H 0.089 0.911 53 H 0.091 0.909 54 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -36.183 -9.975 4.502 37.802 hybrid contribution 1.395 -1.338 -0.530 2.004 sum -34.788 -11.313 3.973 36.797 Atomic orbital electron populations 1.21805 0.93253 1.02430 1.02952 1.21327 0.97143 0.94199 1.01734 1.21343 0.88833 0.99519 1.02369 0.86556 1.21963 1.03600 1.00808 0.94056 1.21086 0.91098 0.81471 0.74583 1.90687 1.71610 1.32557 1.52702 1.49142 1.08180 1.06486 1.71574 1.22836 0.99462 0.79550 1.00307 1.22205 0.93433 0.99731 0.96550 0.87901 1.21827 1.00912 1.01436 0.95617 1.22070 0.94946 0.94044 0.99421 0.90181 1.21537 0.91364 0.98521 1.02159 1.22106 0.89857 0.94073 1.00971 1.60083 1.00435 1.42465 1.28888 1.21626 0.87931 0.94332 1.03265 1.20983 0.84141 0.88576 0.82681 1.90535 1.84213 1.24477 1.50551 1.42050 1.05576 1.17494 1.58174 1.19029 0.86333 1.00204 1.40407 0.92561 1.26093 0.94165 1.03650 0.97287 1.69800 1.00515 1.39469 1.47571 0.85379 0.79480 0.77078 0.79686 1.18202 1.19905 1.15609 1.22499 0.81346 0.98188 0.99892 0.91154 0.92412 0.91637 0.93066 0.93172 0.89089 0.90484 0.93492 0.87817 0.89481 0.92382 0.90790 0.93697 0.90567 0.91207 0.94741 0.90609 0.83690 0.90873 0.87085 0.77512 0.91115 0.90874 0.92147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.67 71.98 0.70 -0.46 16 2 C -0.11 -1.46 4.75 30.60 0.15 -1.32 16 3 C -0.10 -1.17 2.06 -11.54 -0.02 -1.20 16 4 H 0.12 0.88 7.95 -2.39 -0.02 0.86 16 5 C -0.15 -1.11 8.70 71.98 0.63 -0.48 16 6 C 0.53 10.44 7.27 87.66 0.64 11.08 16 7 O -0.59 -17.67 16.19 -3.06 -0.05 -17.72 16 8 N -0.62 -9.66 3.31 -807.49 -2.67 -12.33 16 9 C 0.10 0.81 4.80 86.53 0.42 1.23 16 10 C -0.10 -0.88 3.31 -9.89 -0.03 -0.92 16 11 H 0.10 0.76 7.71 -2.39 -0.02 0.74 16 12 C -0.14 -1.14 8.90 71.98 0.64 -0.50 16 13 C -0.08 -1.11 2.73 -9.88 -0.03 -1.14 16 14 H 0.08 1.15 7.71 -2.39 -0.02 1.13 16 15 C -0.10 -1.53 4.65 30.60 0.14 -1.39 16 16 C 0.06 1.18 5.54 86.30 0.48 1.66 16 17 N -0.69 -19.88 6.13 -517.94 -3.17 -23.06 16 18 C 0.06 1.90 6.17 85.56 0.53 2.43 16 19 C 0.45 20.53 7.82 87.65 0.69 21.21 16 20 O -0.61 -34.28 15.77 -3.06 -0.05 -34.33 16 21 N -0.59 -28.33 5.09 -306.97 -1.56 -29.89 16 22 C -0.33 -19.60 10.16 84.04 0.85 -18.74 16 23 H 0.06 3.96 7.39 -2.91 -0.02 3.94 16 24 C -0.01 -0.74 5.50 84.93 0.47 -0.27 16 25 N -0.93 -56.60 13.96 21.66 0.30 -56.30 16 26 Si 0.96 39.29 27.74 68.60 1.90 41.19 16 27 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 28 H -0.27 -11.06 7.11 99.48 0.71 -10.36 16 29 H -0.23 -8.06 6.52 99.48 0.65 -7.41 16 30 C 0.10 1.74 5.80 86.50 0.50 2.24 16 31 H 0.07 0.39 6.56 -2.39 -0.02 0.37 16 32 H 0.06 0.46 8.14 -2.38 -0.02 0.44 16 33 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 34 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.05 0.88 7.95 -2.39 -0.02 0.86 16 36 H 0.09 0.35 6.57 -2.39 -0.02 0.33 16 37 H 0.08 0.39 5.35 -2.39 -0.01 0.38 16 38 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 39 H 0.10 0.43 6.29 -2.38 -0.01 0.41 16 40 H 0.09 0.55 8.01 -2.39 -0.02 0.53 16 41 H 0.06 0.53 8.14 -2.38 -0.02 0.52 16 42 H 0.07 0.37 8.14 -2.39 -0.02 0.35 16 43 H 0.04 0.46 8.14 -2.39 -0.02 0.44 16 44 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 45 H 0.07 1.06 8.02 -2.39 -0.02 1.05 16 46 H 0.03 0.66 7.53 -2.39 -0.02 0.64 16 47 H 0.08 1.47 8.14 -2.38 -0.02 1.45 16 48 H 0.34 10.56 8.43 -89.69 -0.76 9.80 16 49 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 50 H 0.11 2.98 8.14 -2.39 -0.02 2.96 16 51 H 0.39 15.50 5.76 -92.70 -0.53 14.97 16 52 H 0.28 15.47 8.31 -92.71 -0.77 14.70 16 53 H 0.07 1.22 7.78 -2.39 -0.02 1.20 16 54 H 0.06 1.28 7.89 -2.39 -0.02 1.26 16 Total: -1.00 -82.79 421.50 0.97 -81.82 By element: Atomic # 1 Polarization: 37.64 SS G_CDS: -0.46 Total: 37.18 kcal Atomic # 6 Polarization: 6.70 SS G_CDS: 6.73 Total: 13.43 kcal Atomic # 7 Polarization: -114.47 SS G_CDS: -7.11 Total: -121.57 kcal Atomic # 8 Polarization: -51.95 SS G_CDS: -0.10 Total: -52.05 kcal Atomic # 14 Polarization: 39.29 SS G_CDS: 1.90 Total: 41.19 kcal Total: -82.79 0.97 -81.82 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103902589.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.310 kcal (2) G-P(sol) polarization free energy of solvation -82.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds