Wall clock time and date at job start Sat Apr 11 2020 05:51:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47071 * 2 1 4 4 N 1.46902 * 109.46961 * 119.99856 * 2 1 3 5 5 C 1.47849 * 111.00179 * 190.76921 * 4 2 1 6 6 C 1.54902 * 104.79737 * 213.63792 * 5 4 2 7 7 C 1.55146 * 101.65319 * 37.06893 * 6 5 4 8 8 C 1.47441 * 110.99924 * 69.92782 * 4 2 1 9 9 H 1.09008 * 109.88543 * 242.66350 * 8 4 2 10 10 C 1.50694 * 109.89022 * 3.84563 * 8 4 2 11 11 O 1.21287 * 119.99485 * 66.58029 * 10 8 4 12 12 N 1.34775 * 120.00333 * 246.57750 * 10 8 4 13 13 C 1.46500 * 120.00037 * 179.97438 * 12 10 8 14 14 C 1.52994 * 109.47302 * 179.97438 * 13 12 10 15 15 C 1.52999 * 109.50945 * 59.90328 * 14 13 12 16 16 C 1.53294 * 109.51349 * 180.02562 * 14 13 12 17 17 N 1.47161 * 108.38444 * 172.22939 * 16 14 13 18 18 C 1.36937 * 120.98130 * 129.48973 * 17 16 14 19 19 H 1.08004 * 119.99500 * 209.59101 * 18 17 16 20 20 C 1.38806 * 119.99942 * 29.58618 * 18 17 16 21 21 N 1.31618 * 120.00326 * 11.04818 * 20 18 17 22 22 Si 1.86805 * 119.99654 * 191.05275 * 20 18 17 23 23 H 1.48493 * 109.47274 * 90.00170 * 22 20 18 24 24 H 1.48501 * 109.46717 * 210.00057 * 22 20 18 25 25 H 1.48498 * 109.47231 * 329.99690 * 22 20 18 26 26 C 1.47152 * 118.03444 * 309.46711 * 17 16 14 27 27 C 1.53294 * 108.38417 * 50.53365 * 26 17 16 28 28 O 1.42959 * 109.22597 * 307.69443 * 27 26 17 29 29 H 1.08998 * 109.46933 * 60.00047 * 1 2 3 30 30 H 1.09000 * 109.46752 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47016 * 299.99867 * 1 2 3 32 32 H 1.08997 * 109.47273 * 239.99668 * 2 1 3 33 33 H 1.09003 * 109.46917 * 185.96034 * 3 2 1 34 34 H 1.08995 * 109.47370 * 305.95944 * 3 2 1 35 35 H 1.09002 * 109.47165 * 65.96491 * 3 2 1 36 36 H 1.09003 * 110.37000 * 332.46351 * 5 4 2 37 37 H 1.09000 * 110.37293 * 94.80287 * 5 4 2 38 38 H 1.09006 * 110.99107 * 155.16055 * 6 5 4 39 39 H 1.08996 * 110.98992 * 278.97956 * 6 5 4 40 40 H 1.09006 * 110.70481 * 205.96619 * 7 6 5 41 41 H 1.08991 * 110.85769 * 82.80082 * 7 6 5 42 42 H 0.96992 * 119.99927 * 0.02562 * 12 10 8 43 43 H 1.08998 * 109.47100 * 300.00772 * 13 12 10 44 44 H 1.09005 * 109.46938 * 60.00330 * 13 12 10 45 45 H 1.09001 * 109.47477 * 59.99707 * 15 14 13 46 46 H 1.09001 * 109.47523 * 180.02562 * 15 14 13 47 47 H 1.08999 * 109.47225 * 299.99563 * 15 14 13 48 48 H 1.08998 * 109.68607 * 291.95256 * 16 14 13 49 49 H 1.09002 * 109.68329 * 52.47035 * 16 14 13 50 50 H 0.97002 * 120.00229 * 179.97438 * 21 20 18 51 51 H 1.08994 * 109.68231 * 170.25640 * 26 17 16 52 52 H 1.09006 * 109.68211 * 290.81362 * 26 17 16 53 53 H 1.09002 * 109.51409 * 67.62059 * 27 26 17 54 54 H 1.09000 * 109.51204 * 187.72315 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 3.4747 -0.4929 1.3697 6 6 3.9843 -1.8137 1.9984 7 6 3.1035 -2.8658 1.2743 8 6 1.7503 -2.1400 1.1209 9 1 1.0773 -2.4361 1.9256 10 6 1.1370 -2.4756 -0.2141 11 8 1.7891 -2.3519 -1.2292 12 7 -0.1361 -2.9131 -0.2799 13 6 -0.7325 -3.2388 -1.5778 14 6 -2.1742 -3.7083 -1.3731 15 6 -2.9835 -2.5963 -0.7030 16 6 -2.7990 -4.0500 -2.7306 17 7 -4.1111 -4.6728 -2.4941 18 6 -5.2311 -4.2250 -3.1424 19 1 -6.1988 -4.3114 -2.6707 20 6 -5.1225 -3.6601 -4.4057 21 7 -3.9905 -3.7489 -5.0712 22 14 -6.5831 -2.7737 -5.1610 23 1 -6.5381 -1.3374 -4.7869 24 1 -6.5293 -2.9020 -6.6395 25 1 -7.8430 -3.3773 -4.6574 26 6 -4.1840 -5.7912 -1.5406 27 6 -3.4917 -5.3647 -0.2411 28 8 -2.1840 -4.8729 -0.5439 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 3.1248 1.4443 -0.1067 34 1 1.5922 1.9862 -0.8318 35 1 1.7665 1.9246 0.9386 36 1 3.9502 -0.3245 0.4034 37 1 3.6670 0.3452 2.0395 38 1 5.0402 -1.9696 1.7772 39 1 3.8058 -1.8286 3.0736 40 1 2.9931 -3.7620 1.8849 41 1 3.5200 -3.1150 0.2984 42 1 -0.6576 -3.0116 0.5319 43 1 -0.7250 -2.3534 -2.2135 44 1 -0.1563 -4.0325 -2.0535 45 1 -2.9770 -1.7096 -1.3369 46 1 -4.0103 -2.9315 -0.5570 47 1 -2.5396 -2.3555 0.2630 48 1 -2.9250 -3.1395 -3.3164 49 1 -2.1534 -4.7453 -3.2673 50 1 -3.9147 -3.3544 -5.9542 51 1 -5.2272 -6.0337 -1.3382 52 1 -3.6782 -6.6624 -1.9571 53 1 -4.0737 -4.5788 0.2405 54 1 -3.4133 -6.2216 0.4279 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001107941715.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:51:01 Heat of formation + Delta-G solvation = -54.659808 kcal Electronic energy + Delta-G solvation = -32492.200386 eV Core-core repulsion = 28464.586562 eV Total energy + Delta-G solvation = -4027.613824 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.15036 -40.67017 -38.84091 -36.56941 -35.98596 -35.40103 -33.36568 -33.19600 -30.85704 -30.13060 -29.57425 -28.05760 -27.85145 -27.20028 -24.98920 -23.85685 -22.86355 -22.28860 -21.78469 -20.80571 -20.13008 -18.94111 -18.22809 -17.79959 -17.51785 -16.99315 -16.74859 -16.41862 -16.23135 -15.93139 -15.60039 -15.29479 -15.17741 -14.94852 -14.72701 -14.60251 -14.39459 -14.14791 -13.80336 -13.48936 -13.30706 -13.18553 -13.12002 -13.02195 -12.92490 -12.80035 -12.71439 -12.54257 -12.44991 -12.19229 -12.13379 -12.05796 -12.01459 -11.88684 -11.87314 -11.78639 -11.66625 -11.22210 -11.04400 -10.72299 -10.52951 -9.99566 -9.26907 -8.67890 -7.89636 -5.41851 1.45558 1.45780 1.46260 1.55146 2.08306 2.46948 2.78138 2.92754 3.25926 3.47391 3.50916 3.68982 3.79753 3.93404 4.01644 4.09016 4.10783 4.12605 4.18928 4.37397 4.41969 4.46527 4.48342 4.53508 4.56100 4.62631 4.71402 4.74688 4.76849 4.78409 4.86985 4.89436 4.92034 4.96572 5.02764 5.04229 5.06265 5.08208 5.12069 5.20548 5.23076 5.30822 5.33572 5.36023 5.39661 5.54646 5.60465 5.89473 6.00030 6.30461 6.37327 6.47603 7.07403 7.14925 7.75084 8.30273 9.15290 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.017165 B = 0.003065 C = 0.002794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1630.797607 B = 9132.600474 C =10018.576321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.036 3.964 3 C -0.138 4.138 4 N -0.495 5.495 5 C 0.035 3.965 6 C -0.117 4.117 7 C -0.131 4.131 8 C 0.055 3.945 9 H 0.122 0.878 10 C 0.508 3.492 11 O -0.578 6.578 12 N -0.700 5.700 13 C 0.151 3.849 14 C 0.095 3.905 15 C -0.151 4.151 16 C 0.170 3.830 17 N -0.607 5.607 18 C -0.259 4.259 19 H 0.073 0.927 20 C -0.048 4.048 21 N -0.937 5.937 22 Si 0.968 3.032 23 H -0.283 1.283 24 H -0.298 1.298 25 H -0.266 1.266 26 C 0.102 3.898 27 C 0.053 3.947 28 O -0.385 6.385 29 H 0.047 0.953 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.051 0.949 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.070 0.930 36 H 0.037 0.963 37 H 0.100 0.900 38 H 0.088 0.912 39 H 0.095 0.905 40 H 0.099 0.901 41 H 0.055 0.945 42 H 0.415 0.585 43 H 0.068 0.932 44 H 0.051 0.949 45 H 0.053 0.947 46 H 0.061 0.939 47 H 0.077 0.923 48 H 0.065 0.935 49 H -0.010 1.010 50 H 0.250 0.750 51 H 0.072 0.928 52 H 0.011 0.989 53 H 0.061 0.939 54 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.065 5.672 18.855 23.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.072 4.072 3 C -0.196 4.196 4 N -0.221 5.221 5 C -0.092 4.092 6 C -0.155 4.155 7 C -0.169 4.169 8 C -0.056 4.056 9 H 0.140 0.860 10 C 0.296 3.704 11 O -0.458 6.458 12 N -0.353 5.353 13 C 0.026 3.974 14 C 0.054 3.946 15 C -0.208 4.208 16 C 0.043 3.957 17 N -0.331 5.331 18 C -0.389 4.389 19 H 0.090 0.910 20 C -0.244 4.244 21 N -0.583 5.583 22 Si 0.796 3.204 23 H -0.210 1.210 24 H -0.225 1.225 25 H -0.191 1.191 26 C -0.023 4.023 27 C -0.025 4.025 28 O -0.304 6.304 29 H 0.066 0.934 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.068 0.932 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.089 0.911 36 H 0.056 0.944 37 H 0.118 0.882 38 H 0.106 0.894 39 H 0.114 0.886 40 H 0.118 0.882 41 H 0.074 0.926 42 H 0.253 0.747 43 H 0.086 0.914 44 H 0.070 0.930 45 H 0.072 0.928 46 H 0.080 0.920 47 H 0.095 0.905 48 H 0.084 0.916 49 H 0.008 0.992 50 H 0.059 0.941 51 H 0.090 0.910 52 H 0.029 0.971 53 H 0.079 0.921 54 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 12.400 5.919 18.459 23.012 hybrid contribution -0.916 -0.080 -2.067 2.262 sum 11.484 5.839 16.393 20.849 Atomic orbital electron populations 1.22297 0.94241 1.04022 1.01892 1.22328 0.96250 0.96356 0.92267 1.21830 1.00925 0.94189 1.02613 1.64282 1.15809 1.05579 1.36426 1.23223 0.86353 0.99782 0.99882 1.22702 0.99644 0.92180 1.00930 1.22795 0.92861 0.99792 1.01487 1.22787 0.99233 0.90484 0.93140 0.86009 1.21433 0.81273 0.75355 0.92366 1.90638 1.62415 1.53998 1.38732 1.46066 1.13397 1.65869 1.09962 1.20981 0.91276 0.99288 0.85842 1.22171 0.93698 0.86298 0.92434 1.22091 1.00773 0.97414 1.00516 1.21026 0.85396 0.97141 0.92093 1.44209 1.04711 1.35028 1.49202 1.19498 0.87922 1.34891 0.96546 0.90952 1.25901 0.99473 1.02660 0.96354 1.70142 1.27015 1.48451 1.12723 0.85256 0.79646 0.78615 0.76871 1.20993 1.22480 1.19088 1.21824 0.99759 0.89781 0.90982 1.23110 0.83783 0.99522 0.96048 1.87819 1.28835 1.44505 1.69248 0.93361 0.90987 0.91059 0.93175 0.92288 0.92339 0.91075 0.94446 0.88219 0.89368 0.88596 0.88225 0.92590 0.74726 0.91357 0.93032 0.92782 0.92034 0.90458 0.91627 0.99229 0.94108 0.90989 0.97072 0.92092 0.86389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.04 8.94 71.98 0.64 -3.40 16 2 C 0.04 0.88 2.09 44.92 0.09 0.97 16 3 C -0.14 -2.74 8.71 71.98 0.63 -2.11 16 4 N -0.50 -10.16 5.03 -839.85 -4.22 -14.38 16 5 C 0.03 0.59 5.40 86.77 0.47 1.06 16 6 C -0.12 -1.57 7.08 31.98 0.23 -1.34 16 7 C -0.13 -2.35 6.43 31.78 0.20 -2.14 16 8 C 0.05 1.13 3.60 44.51 0.16 1.29 16 9 H 0.12 1.99 7.96 -2.38 -0.02 1.97 16 10 C 0.51 14.21 3.97 87.66 0.35 14.56 16 11 O -0.58 -20.93 13.97 -3.05 -0.04 -20.97 16 12 N -0.70 -18.96 3.17 -463.07 -1.47 -20.43 16 13 C 0.15 5.22 4.82 86.38 0.42 5.63 16 14 C 0.10 3.46 0.76 -10.70 -0.01 3.45 16 15 C -0.15 -4.84 7.92 71.98 0.57 -4.27 16 16 C 0.17 8.18 4.06 86.35 0.35 8.53 16 17 N -0.61 -29.69 2.56 -697.53 -1.79 -31.48 16 18 C -0.26 -13.74 9.64 84.03 0.81 -12.93 16 19 H 0.07 3.69 7.85 -2.91 -0.02 3.67 16 20 C -0.05 -2.66 5.06 84.86 0.43 -2.23 16 21 N -0.94 -55.22 11.03 21.65 0.24 -54.98 16 22 Si 0.97 44.13 29.57 68.60 2.03 46.16 16 23 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 24 H -0.30 -13.88 7.11 99.48 0.71 -13.18 16 25 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 26 C 0.10 4.06 6.73 86.35 0.58 4.64 16 27 C 0.05 1.64 6.60 72.08 0.48 2.12 16 28 O -0.38 -13.22 9.98 -148.98 -1.49 -14.71 16 29 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.07 1.81 3.93 -2.39 -0.01 1.80 16 31 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.05 1.59 5.08 -2.39 -0.01 1.58 16 33 H 0.06 1.08 6.73 -2.39 -0.02 1.07 16 34 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.04 0.75 7.02 -2.39 -0.02 0.73 16 37 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.09 1.00 8.14 -2.38 -0.02 0.98 16 39 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.10 1.38 8.14 -2.38 -0.02 1.36 16 41 H 0.06 1.31 7.33 -2.39 -0.02 1.29 16 42 H 0.41 9.34 6.98 -92.71 -0.65 8.70 16 43 H 0.07 2.52 8.14 -2.39 -0.02 2.51 16 44 H 0.05 1.99 8.14 -2.38 -0.02 1.97 16 45 H 0.05 1.83 8.14 -2.39 -0.02 1.82 16 46 H 0.06 2.15 6.11 -2.39 -0.01 2.14 16 47 H 0.08 1.94 6.86 -2.39 -0.02 1.92 16 48 H 0.07 3.55 6.20 -2.39 -0.01 3.53 16 49 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 50 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 51 H 0.07 2.68 7.96 -2.39 -0.02 2.66 16 52 H 0.01 0.48 8.14 -2.38 -0.02 0.46 16 53 H 0.06 1.79 6.25 -2.39 -0.01 1.78 16 54 H 0.12 2.85 8.14 -2.39 -0.02 2.83 16 Total: -1.00 -67.56 397.01 -0.10 -67.67 By element: Atomic # 1 Polarization: 29.05 SS G_CDS: 0.24 Total: 29.29 kcal Atomic # 6 Polarization: 7.43 SS G_CDS: 6.40 Total: 13.83 kcal Atomic # 7 Polarization: -114.03 SS G_CDS: -7.24 Total: -121.27 kcal Atomic # 8 Polarization: -34.15 SS G_CDS: -1.53 Total: -35.68 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Total: -67.56 -0.10 -67.67 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107941715.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.005 kcal (2) G-P(sol) polarization free energy of solvation -67.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds