Wall clock time and date at job start Sat Apr 11 2020 05:51:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.46831 * 2 1 4 4 H 1.09001 * 109.46917 * 305.00193 * 3 2 1 5 5 C 1.53001 * 109.47363 * 65.00008 * 3 2 1 6 6 C 1.50699 * 109.47065 * 185.00258 * 3 2 1 7 7 O 1.21284 * 119.99855 * 341.39268 * 6 3 2 8 8 N 1.34780 * 120.00119 * 161.39494 * 6 3 2 9 9 C 1.47078 * 120.88190 * 184.68781 * 8 6 3 10 10 C 1.53690 * 108.27955 * 128.75274 * 9 8 6 11 11 N 1.46898 * 109.25736 * 54.08348 * 10 9 8 12 12 C 1.46895 * 111.00515 * 172.61051 * 11 10 9 13 13 C 1.50707 * 109.46698 * 294.30338 * 12 11 10 14 14 O 1.21277 * 119.99800 * 359.97438 * 13 12 11 15 15 N 1.34774 * 119.99787 * 180.02562 * 13 12 11 16 16 C 1.46501 * 120.00425 * 359.97438 * 15 13 12 17 17 C 1.52997 * 109.47357 * 89.99824 * 16 15 13 18 18 C 1.46503 * 120.00152 * 179.97438 * 15 13 12 19 19 C 1.50699 * 109.46968 * 89.99347 * 18 15 13 20 20 H 1.08000 * 120.00430 * 0.02562 * 19 18 15 21 21 C 1.37877 * 120.00040 * 179.97438 * 19 18 15 22 22 N 1.31522 * 119.99889 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00292 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.46913 * 90.00608 * 23 21 19 25 25 H 1.48502 * 109.47405 * 210.00560 * 23 21 19 26 26 H 1.48502 * 109.47005 * 330.00667 * 23 21 19 27 27 C 1.46905 * 111.26790 * 296.75523 * 11 10 9 28 28 C 1.47078 * 120.88078 * 4.96346 * 8 6 3 29 29 H 1.08996 * 109.47272 * 60.00269 * 1 2 3 30 30 H 1.08997 * 109.46811 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.46828 * 299.99991 * 1 2 3 32 32 H 1.08997 * 109.46711 * 239.99969 * 2 1 3 33 33 H 1.08996 * 109.47272 * 119.99731 * 2 1 3 34 34 H 1.08996 * 109.46627 * 66.62267 * 5 3 2 35 35 H 1.08997 * 109.46899 * 186.61809 * 5 3 2 36 36 H 1.09003 * 109.47126 * 306.61998 * 5 3 2 37 37 H 1.09001 * 109.62950 * 248.52326 * 9 8 6 38 38 H 1.09008 * 109.62746 * 9.09701 * 9 8 6 39 39 H 1.09001 * 109.65087 * 294.07769 * 10 9 8 40 40 H 1.09001 * 109.42649 * 173.94767 * 10 9 8 41 41 H 1.09001 * 109.47334 * 54.29428 * 12 11 10 42 42 H 1.08998 * 109.47496 * 174.30044 * 12 11 10 43 43 H 1.08998 * 109.47513 * 210.00554 * 16 15 13 44 44 H 1.09005 * 109.46784 * 330.00280 * 16 15 13 45 45 H 1.08998 * 109.47405 * 300.00796 * 17 16 15 46 46 H 1.09004 * 109.47168 * 60.00071 * 17 16 15 47 47 H 1.08996 * 109.47544 * 180.02562 * 17 16 15 48 48 H 1.08993 * 109.47238 * 209.99874 * 18 15 13 49 49 H 1.09001 * 109.46961 * 330.00055 * 18 15 13 50 50 H 0.96996 * 119.99990 * 179.97438 * 22 21 19 51 51 H 1.08999 * 109.49594 * 303.14636 * 27 11 10 52 52 H 1.09000 * 109.49391 * 183.06410 * 27 11 10 53 53 H 1.09005 * 109.62684 * 350.89856 * 28 8 6 54 54 H 1.08995 * 109.63067 * 111.47985 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 1.6352 2.1266 1.3073 6 6 3.5419 1.4444 -0.1239 7 8 4.1726 0.4404 0.1312 8 7 4.1842 2.5618 -0.5181 9 6 5.6375 2.5572 -0.7443 10 6 5.9110 3.1537 -2.1340 11 7 5.2724 4.4733 -2.2291 12 6 5.6534 5.1542 -3.4736 13 6 7.1284 5.4626 -3.4461 14 8 7.7960 5.1467 -2.4842 15 7 7.7051 6.0904 -4.4900 16 6 6.8984 6.4725 -5.6517 17 6 6.3388 7.8811 -5.4429 18 6 9.1387 6.3907 -4.4631 19 6 9.9048 5.2372 -5.0576 20 1 9.3767 4.3676 -5.4198 21 6 11.2800 5.2925 -5.1403 22 7 11.9232 6.3518 -4.6998 23 14 12.2296 3.8630 -5.8780 24 1 12.3816 4.0718 -7.3403 25 1 13.5717 3.7822 -5.2474 26 1 11.4905 2.5986 -5.6326 27 6 3.8117 4.3680 -2.1126 28 6 3.4513 3.8196 -0.7278 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8901 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 2.1629 1.6608 2.1396 35 1 1.8943 3.1842 1.2593 36 1 0.5602 2.0221 1.4544 37 1 6.1288 3.1600 0.0195 38 1 6.0111 1.5340 -0.7035 39 1 5.5033 2.4962 -2.9018 40 1 6.9863 3.2589 -2.2782 41 1 5.4333 4.5081 -4.3234 42 1 5.0898 6.0824 -3.5672 43 1 7.5203 6.4575 -6.5467 44 1 6.0749 5.7682 -5.7696 45 1 5.7169 7.8961 -4.5479 46 1 7.1623 8.5855 -5.3249 47 1 5.7383 8.1653 -6.3070 48 1 9.3319 7.2929 -5.0434 49 1 9.4581 6.5462 -3.4326 50 1 12.8907 6.3905 -4.7576 51 1 3.4333 3.6935 -2.8807 52 1 3.3646 5.3537 -2.2412 53 1 2.3789 3.6315 -0.6762 54 1 3.7365 4.5415 0.0374 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001112615021.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:51:25 Heat of formation + Delta-G solvation = -89.547134 kcal Electronic energy + Delta-G solvation = -30935.458282 eV Core-core repulsion = 26906.331630 eV Total energy + Delta-G solvation = -4029.126652 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.56786 -40.75863 -38.90842 -36.89923 -36.47309 -35.60399 -34.87215 -32.33435 -31.64374 -30.85107 -30.18291 -28.77675 -26.78277 -25.89225 -24.83066 -24.61683 -23.85231 -22.92468 -21.33675 -19.89809 -19.78051 -18.62287 -18.39810 -17.86756 -17.26904 -17.09638 -16.68848 -16.47943 -16.31271 -15.68010 -15.58857 -15.57614 -15.32921 -15.10689 -14.64854 -14.59686 -14.35505 -14.29055 -13.97898 -13.68402 -13.48338 -13.28225 -13.16119 -13.12467 -12.89999 -12.83724 -12.67371 -12.64306 -12.51196 -12.49718 -12.39934 -12.25824 -12.15392 -12.10734 -11.80677 -11.70440 -11.68387 -11.58137 -10.74596 -10.64940 -10.48747 -9.82377 -9.38600 -9.26532 -8.22969 -6.37540 1.33697 1.36990 1.46786 1.56869 1.88769 1.91155 2.24504 2.39999 2.92995 3.06201 3.43174 3.68790 3.79448 3.89047 3.96915 3.97596 4.05585 4.12672 4.18818 4.29399 4.34684 4.40753 4.43898 4.49582 4.50626 4.55561 4.62041 4.68604 4.72392 4.74101 4.81051 4.82780 4.93917 4.96663 5.02682 5.03266 5.05289 5.08230 5.13431 5.20897 5.23884 5.36633 5.40993 5.42736 5.51990 5.58788 5.78974 5.89910 6.07194 6.07296 6.41180 6.71116 6.86862 7.11055 7.29057 7.57213 8.83622 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.015918 B = 0.002475 C = 0.002263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.587882 B =11309.980359 C =12368.295748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.107 4.107 3 C -0.102 4.102 4 H 0.122 0.878 5 C -0.143 4.143 6 C 0.509 3.491 7 O -0.593 6.593 8 N -0.612 5.612 9 C 0.127 3.873 10 C 0.051 3.949 11 N -0.536 5.536 12 C 0.054 3.946 13 C 0.494 3.506 14 O -0.579 6.579 15 N -0.606 5.606 16 C 0.100 3.900 17 C -0.160 4.160 18 C 0.265 3.735 19 C -0.539 4.539 20 H 0.050 0.950 21 C 0.007 3.993 22 N -0.928 5.928 23 Si 0.965 3.035 24 H -0.262 1.262 25 H -0.282 1.282 26 H -0.275 1.275 27 C 0.039 3.961 28 C 0.108 3.892 29 H 0.067 0.933 30 H 0.057 0.943 31 H 0.071 0.929 32 H 0.047 0.953 33 H 0.051 0.949 34 H 0.042 0.958 35 H 0.076 0.924 36 H 0.096 0.904 37 H 0.064 0.936 38 H 0.073 0.927 39 H 0.033 0.967 40 H 0.069 0.931 41 H 0.077 0.923 42 H 0.136 0.864 43 H 0.068 0.932 44 H 0.099 0.901 45 H 0.064 0.936 46 H 0.035 0.965 47 H 0.095 0.905 48 H 0.020 0.980 49 H -0.005 1.005 50 H 0.266 0.734 51 H 0.048 0.952 52 H 0.122 0.878 53 H 0.129 0.871 54 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.774 -2.918 3.822 30.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.145 4.145 3 C -0.123 4.123 4 H 0.140 0.860 5 C -0.201 4.201 6 C 0.300 3.700 7 O -0.474 6.474 8 N -0.344 5.344 9 C 0.003 3.997 10 C -0.078 4.078 11 N -0.261 5.261 12 C -0.077 4.077 13 C 0.282 3.718 14 O -0.459 6.459 15 N -0.338 5.338 16 C -0.023 4.023 17 C -0.218 4.218 18 C 0.143 3.857 19 C -0.577 4.577 20 H 0.069 0.931 21 C -0.192 4.192 22 N -0.568 5.568 23 Si 0.789 3.211 24 H -0.187 1.187 25 H -0.207 1.207 26 H -0.200 1.200 27 C -0.089 4.089 28 C -0.014 4.014 29 H 0.087 0.913 30 H 0.076 0.924 31 H 0.090 0.910 32 H 0.066 0.934 33 H 0.070 0.930 34 H 0.061 0.939 35 H 0.095 0.905 36 H 0.115 0.885 37 H 0.083 0.917 38 H 0.091 0.909 39 H 0.051 0.949 40 H 0.087 0.913 41 H 0.095 0.905 42 H 0.153 0.847 43 H 0.086 0.914 44 H 0.118 0.882 45 H 0.083 0.917 46 H 0.054 0.946 47 H 0.114 0.886 48 H 0.038 0.962 49 H 0.013 0.987 50 H 0.075 0.925 51 H 0.067 0.933 52 H 0.140 0.860 53 H 0.146 0.854 54 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -28.761 -3.221 4.848 29.344 hybrid contribution 1.673 -1.104 -0.924 2.208 sum -27.087 -4.325 3.923 27.709 Atomic orbital electron populations 1.21813 0.92958 1.02469 1.03139 1.21336 0.97390 0.94108 1.01637 1.21423 0.88459 0.99764 1.02623 0.86033 1.21888 1.03606 1.00678 0.93894 1.21588 0.91871 0.81630 0.74957 1.90666 1.70025 1.34877 1.51843 1.48371 1.07922 1.11289 1.66826 1.21489 0.81309 1.00691 0.96193 1.22444 1.00395 0.88973 0.96008 1.61496 1.09625 1.19433 1.35554 1.22003 0.91526 1.01969 0.92154 1.21241 0.90986 0.77574 0.81971 1.90619 1.66392 1.53495 1.35381 1.48299 1.09807 1.57427 1.18299 1.21738 0.95099 0.97584 0.87842 1.22147 1.00791 0.95450 1.03407 1.18634 0.76741 0.95040 0.95257 1.21687 0.92262 1.03524 1.40259 0.93126 1.25840 0.98652 0.98795 0.95914 1.70051 1.08852 1.30321 1.47543 0.85461 0.77624 0.79011 0.78984 1.18726 1.20729 1.19986 1.22712 0.85742 1.03385 0.97015 1.22239 0.98115 0.83956 0.97102 0.91348 0.92438 0.91009 0.93390 0.93046 0.93898 0.90546 0.88537 0.91744 0.90868 0.94899 0.91272 0.90547 0.84656 0.91363 0.88247 0.91680 0.94564 0.88628 0.96187 0.98706 0.92467 0.93343 0.86039 0.85354 0.90040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.68 71.98 0.70 -0.62 16 2 C -0.11 -1.67 4.77 30.60 0.15 -1.52 16 3 C -0.10 -1.43 1.86 -11.54 -0.02 -1.45 16 4 H 0.12 1.01 6.85 -2.39 -0.02 0.99 16 5 C -0.14 -1.45 8.83 71.98 0.64 -0.82 16 6 C 0.51 12.28 6.88 87.66 0.60 12.89 16 7 O -0.59 -20.19 15.59 -3.04 -0.05 -20.24 16 8 N -0.61 -13.86 3.00 -817.04 -2.45 -16.31 16 9 C 0.13 3.77 6.61 86.50 0.57 4.34 16 10 C 0.05 1.57 5.27 86.54 0.46 2.03 16 11 N -0.54 -13.82 4.37 -898.87 -3.93 -17.75 16 12 C 0.05 1.38 4.00 85.56 0.34 1.73 16 13 C 0.49 19.87 7.33 87.66 0.64 20.51 16 14 O -0.58 -29.62 13.91 -3.02 -0.04 -29.66 16 15 N -0.61 -25.03 2.46 -826.16 -2.03 -27.06 16 16 C 0.10 2.86 5.93 86.38 0.51 3.37 16 17 C -0.16 -3.59 10.24 71.98 0.74 -2.86 16 18 C 0.26 14.33 5.16 85.63 0.44 14.77 16 19 C -0.54 -31.28 9.39 25.60 0.24 -31.04 16 20 H 0.05 2.91 7.81 -2.91 -0.02 2.89 16 21 C 0.01 0.40 5.46 84.65 0.46 0.86 16 22 N -0.93 -56.83 13.29 21.45 0.28 -56.55 16 23 Si 0.96 45.70 29.54 68.60 2.03 47.72 16 24 H -0.26 -11.60 7.11 99.48 0.71 -10.90 16 25 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 26 H -0.27 -12.94 7.11 99.48 0.71 -12.24 16 27 C 0.04 0.58 5.62 86.38 0.49 1.07 16 28 C 0.11 1.50 5.72 86.35 0.49 1.99 16 29 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.07 0.47 6.43 -2.38 -0.02 0.45 16 32 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.05 1.00 8.06 -2.39 -0.02 0.98 16 34 H 0.04 0.62 8.14 -2.39 -0.02 0.60 16 35 H 0.08 0.58 6.66 -2.39 -0.02 0.56 16 36 H 0.10 0.53 6.28 -2.39 -0.01 0.52 16 37 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 38 H 0.07 2.42 7.09 -2.38 -0.02 2.41 16 39 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.07 2.79 5.77 -2.39 -0.01 2.78 16 41 H 0.08 1.70 7.38 -2.39 -0.02 1.69 16 42 H 0.14 2.49 7.01 -2.39 -0.02 2.47 16 43 H 0.07 2.14 8.07 -2.39 -0.02 2.12 16 44 H 0.10 2.11 6.44 -2.38 -0.02 2.09 16 45 H 0.06 1.29 7.22 -2.39 -0.02 1.27 16 46 H 0.04 1.00 8.14 -2.38 -0.02 0.98 16 47 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 48 H 0.02 1.11 8.07 -2.39 -0.02 1.09 16 49 H -0.01 -0.33 7.42 -2.39 -0.02 -0.34 16 50 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 51 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 52 H 0.12 1.07 7.99 -2.39 -0.02 1.05 16 53 H 0.13 0.81 4.93 -2.38 -0.01 0.80 16 54 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 Total: -1.00 -84.25 415.44 2.12 -82.12 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: 0.87 Total: 12.48 kcal Atomic # 6 Polarization: 17.80 SS G_CDS: 7.45 Total: 25.25 kcal Atomic # 7 Polarization: -109.54 SS G_CDS: -8.13 Total: -117.67 kcal Atomic # 8 Polarization: -49.81 SS G_CDS: -0.09 Total: -49.90 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.72 kcal Total: -84.25 2.12 -82.12 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112615021.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.425 kcal (2) G-P(sol) polarization free energy of solvation -84.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds