Wall clock time and date at job start Sat Apr 11 2020 05:51:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53005 * 109.47013 * 2 1 4 4 H 1.08995 * 109.46915 * 54.99966 * 3 2 1 5 5 C 1.53003 * 109.46806 * 294.99988 * 3 2 1 6 6 C 1.50704 * 109.47062 * 175.00312 * 3 2 1 7 7 O 1.21285 * 119.99626 * 359.97438 * 6 3 2 8 8 N 1.34776 * 120.00162 * 179.97438 * 6 3 2 9 9 C 1.46502 * 119.99759 * 179.97438 * 8 6 3 10 10 C 1.53003 * 109.46456 * 174.35585 * 9 8 6 11 11 N 1.46891 * 109.47237 * 305.31424 * 10 9 8 12 12 C 1.46898 * 111.00158 * 305.21190 * 11 10 9 13 13 C 1.50707 * 109.47370 * 185.17333 * 12 11 10 14 14 O 1.21292 * 119.99441 * 0.02562 * 13 12 11 15 15 N 1.34771 * 120.00204 * 180.27414 * 13 12 11 16 16 C 1.37097 * 120.00342 * 179.72312 * 15 13 12 17 17 H 1.08001 * 119.99409 * 0.02562 * 16 15 13 18 18 C 1.38945 * 120.00028 * 180.02562 * 16 15 13 19 19 N 1.31417 * 119.99487 * 180.02562 * 18 16 15 20 20 Si 1.86793 * 120.00126 * 0.02562 * 18 16 15 21 21 H 1.48503 * 109.47212 * 90.00274 * 20 18 16 22 22 H 1.48507 * 109.47026 * 209.99750 * 20 18 16 23 23 H 1.48500 * 109.47443 * 330.00028 * 20 18 16 24 24 C 1.52997 * 109.47215 * 65.31892 * 10 9 8 25 25 C 1.53003 * 109.47192 * 179.97438 * 24 10 9 26 26 C 1.52998 * 109.46884 * 299.99782 * 25 24 10 27 27 C 1.52997 * 109.47028 * 60.00118 * 26 25 24 28 28 C 1.52994 * 109.46996 * 299.99671 * 27 26 25 29 29 H 1.09001 * 109.46729 * 59.99565 * 1 2 3 30 30 H 1.08993 * 109.47042 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46874 * 300.00346 * 1 2 3 32 32 H 1.09003 * 109.47048 * 240.00011 * 2 1 3 33 33 H 1.08995 * 109.47209 * 119.99966 * 2 1 3 34 34 H 1.08997 * 109.47339 * 60.00270 * 5 3 2 35 35 H 1.09007 * 109.46513 * 180.02562 * 5 3 2 36 36 H 1.08995 * 109.47366 * 299.99703 * 5 3 2 37 37 H 0.97004 * 119.99506 * 359.97438 * 8 6 3 38 38 H 1.08993 * 109.47459 * 54.35681 * 9 8 6 39 39 H 1.09001 * 109.46561 * 294.35356 * 9 8 6 40 40 H 1.00900 * 111.00505 * 69.17030 * 11 10 9 41 41 H 1.09002 * 109.47178 * 65.17132 * 12 11 10 42 42 H 1.09001 * 109.47330 * 305.17616 * 12 11 10 43 43 H 0.97012 * 119.99693 * 359.72827 * 15 13 12 44 44 H 0.96996 * 119.99521 * 180.02562 * 19 18 16 45 45 H 1.09004 * 109.47152 * 299.99891 * 24 10 9 46 46 H 1.09007 * 109.47510 * 59.99258 * 24 10 9 47 47 H 1.09006 * 109.47029 * 179.97438 * 25 24 10 48 48 H 1.09000 * 109.46996 * 59.99849 * 25 24 10 49 49 H 1.08993 * 109.47041 * 299.99812 * 26 25 24 50 50 H 1.09003 * 109.46662 * 179.97438 * 26 25 24 51 51 H 1.08999 * 109.46903 * 179.97438 * 27 26 25 52 52 H 1.08993 * 109.47459 * 59.99950 * 27 26 25 53 53 H 1.09000 * 109.47112 * 300.00102 * 28 27 26 54 54 H 1.09000 * 109.47243 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6352 2.1265 -1.3074 6 6 3.5420 1.4444 0.1238 7 8 4.1450 0.3951 0.2045 8 7 4.2151 2.6118 0.1447 9 6 5.6751 2.6135 0.2656 10 6 6.1968 4.0448 0.1237 11 7 5.7067 4.6221 -1.1350 12 6 6.0611 3.7703 -2.2781 13 6 5.6556 4.4537 -3.5587 14 8 5.1242 5.5434 -3.5225 15 7 5.8790 3.8518 -4.7437 16 6 5.5051 4.4710 -5.9083 17 1 5.0318 5.4412 -5.8761 18 6 5.7349 3.8502 -7.1299 19 7 5.3768 4.4440 -8.2463 20 14 6.5528 2.1717 -7.1854 21 1 5.5137 1.1125 -7.1242 22 1 7.3224 2.0376 -8.4484 23 1 7.4723 2.0305 -6.0280 24 6 5.6992 4.8880 1.2994 25 6 6.2214 6.3191 1.1578 26 6 7.7513 6.3054 1.1516 27 6 8.2489 5.4623 -0.0242 28 6 7.7267 4.0312 0.1174 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 0.5490 2.1252 -1.3970 35 1 1.9990 3.1541 -1.3075 36 1 2.0699 1.5876 -2.1492 37 1 3.7327 3.4509 0.0797 38 1 6.1053 1.9906 -0.5185 39 1 5.9593 2.2181 1.2408 40 1 4.7109 4.7802 -1.0968 41 1 5.5410 2.8160 -2.1951 42 1 7.1374 3.5982 -2.2831 43 1 6.3044 2.9804 -4.7725 44 1 5.5370 4.0104 -9.0991 45 1 4.6092 4.8973 1.3042 46 1 6.0628 4.4595 2.2335 47 1 5.8665 6.9199 1.9953 48 1 5.8580 6.7477 0.2238 49 1 8.1146 5.8768 2.0855 50 1 8.1233 7.3250 1.0503 51 1 9.3388 5.4529 -0.0289 52 1 7.8856 5.8909 -0.9581 53 1 8.0901 3.6026 1.0514 54 1 8.0816 3.4304 -0.7199 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001115414214.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:51:41 Heat of formation + Delta-G solvation = -119.486031 kcal Electronic energy + Delta-G solvation = -31740.306637 eV Core-core repulsion = 27709.881737 eV Total energy + Delta-G solvation = -4030.424900 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.59598 -40.47521 -39.74743 -36.50405 -36.21733 -35.94807 -34.56086 -33.72344 -31.76047 -31.48515 -30.44140 -28.18103 -27.11035 -25.90699 -25.63396 -23.65612 -22.68193 -21.73338 -21.23167 -20.79931 -20.26641 -19.86056 -18.33548 -17.83955 -17.13272 -17.03445 -16.71151 -16.47490 -16.12374 -15.84385 -15.74101 -15.23377 -15.10114 -15.00570 -14.83853 -14.54781 -14.44181 -14.24891 -14.08643 -13.98289 -13.59742 -13.22533 -13.16099 -13.00536 -12.98020 -12.73261 -12.65096 -12.63542 -12.56676 -12.50152 -12.43066 -12.01082 -11.84045 -11.75229 -11.61767 -11.52375 -11.34499 -11.08768 -10.83130 -10.75182 -10.42483 -10.24469 -10.13882 -9.30357 -8.42335 -6.01790 1.27281 1.31303 1.39642 1.59761 1.95728 2.13712 2.19712 2.69626 3.14414 3.36184 3.61865 3.67134 3.73136 3.84370 3.92580 3.95257 4.11337 4.28879 4.33411 4.34648 4.37573 4.44035 4.47829 4.50137 4.58402 4.61269 4.64927 4.68908 4.72906 4.77883 4.82146 4.91430 4.98872 5.00717 5.08636 5.09973 5.16400 5.17795 5.30490 5.35774 5.41714 5.43366 5.47104 5.48264 5.51357 5.52430 5.75733 5.91302 6.04435 6.38646 6.44946 6.59015 6.88113 7.18401 7.39811 7.95781 8.75210 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.006816 B = 0.004537 C = 0.003074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4106.694769 B = 6170.183065 C = 9105.783345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.104 4.104 3 C -0.104 4.104 4 H 0.123 0.877 5 C -0.146 4.146 6 C 0.513 3.487 7 O -0.582 6.582 8 N -0.719 5.719 9 C 0.091 3.909 10 C 0.114 3.886 11 N -0.649 5.649 12 C 0.061 3.939 13 C 0.455 3.545 14 O -0.604 6.604 15 N -0.595 5.595 16 C -0.323 4.323 17 H 0.060 0.940 18 C -0.010 4.010 19 N -0.932 5.932 20 Si 0.956 3.044 21 H -0.260 1.260 22 H -0.273 1.273 23 H -0.237 1.237 24 C -0.098 4.098 25 C -0.112 4.112 26 C -0.111 4.111 27 C -0.111 4.111 28 C -0.102 4.102 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.068 0.932 32 H 0.047 0.953 33 H 0.059 0.941 34 H 0.088 0.912 35 H 0.063 0.937 36 H 0.040 0.960 37 H 0.407 0.593 38 H 0.058 0.942 39 H 0.076 0.924 40 H 0.342 0.658 41 H 0.060 0.940 42 H 0.107 0.893 43 H 0.385 0.615 44 H 0.278 0.722 45 H 0.067 0.933 46 H 0.085 0.915 47 H 0.067 0.933 48 H 0.053 0.947 49 H 0.071 0.929 50 H 0.054 0.946 51 H 0.060 0.940 52 H 0.048 0.952 53 H 0.086 0.914 54 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.601 -6.614 24.306 25.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.142 4.142 3 C -0.125 4.125 4 H 0.141 0.859 5 C -0.203 4.203 6 C 0.301 3.699 7 O -0.462 6.462 8 N -0.371 5.371 9 C -0.035 4.035 10 C 0.023 3.977 11 N -0.282 5.282 12 C -0.071 4.071 13 C 0.242 3.758 14 O -0.488 6.488 15 N -0.237 5.237 16 C -0.452 4.452 17 H 0.078 0.922 18 C -0.209 4.209 19 N -0.573 5.573 20 Si 0.776 3.224 21 H -0.185 1.185 22 H -0.198 1.198 23 H -0.160 1.160 24 C -0.136 4.136 25 C -0.150 4.150 26 C -0.149 4.149 27 C -0.149 4.149 28 C -0.140 4.140 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.087 0.913 32 H 0.066 0.934 33 H 0.078 0.922 34 H 0.107 0.893 35 H 0.082 0.918 36 H 0.060 0.940 37 H 0.244 0.756 38 H 0.076 0.924 39 H 0.095 0.905 40 H 0.162 0.838 41 H 0.078 0.922 42 H 0.125 0.875 43 H 0.220 0.780 44 H 0.088 0.912 45 H 0.086 0.914 46 H 0.104 0.896 47 H 0.086 0.914 48 H 0.072 0.928 49 H 0.089 0.911 50 H 0.072 0.928 51 H 0.079 0.921 52 H 0.067 0.933 53 H 0.105 0.895 54 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.993 -6.174 24.089 24.888 hybrid contribution -0.336 -1.053 -1.045 1.521 sum -1.329 -7.228 23.044 24.188 Atomic orbital electron populations 1.21817 0.93637 1.02430 1.02759 1.21306 0.96908 0.94028 1.01934 1.21388 0.89836 0.99676 1.01574 0.85881 1.21843 1.03557 1.00086 0.94846 1.21213 0.91164 0.83046 0.74472 1.90674 1.71392 1.32813 1.51272 1.45980 1.07768 1.08954 1.74438 1.22110 0.80191 0.98809 1.02373 1.21307 0.96460 0.90102 0.89843 1.60197 1.20605 1.47043 1.00320 1.21599 1.02808 0.94336 0.88368 1.20836 0.82693 0.86834 0.85403 1.90541 1.47490 1.23202 1.87529 1.42083 1.56336 1.19751 1.05498 1.18996 1.38384 1.03900 0.83930 0.92215 1.25970 0.97940 1.03151 0.93839 1.69790 1.48108 1.40867 0.98569 0.85492 0.79430 0.77749 0.79693 1.18492 1.19806 1.16047 1.21560 1.00496 0.95283 0.96289 1.21400 0.95730 0.96199 1.01634 1.21451 0.95728 0.99456 0.98215 1.21358 0.99391 0.95052 0.99081 1.21544 0.92171 0.97701 1.02617 0.91979 0.92189 0.91329 0.93388 0.92195 0.89314 0.91836 0.94044 0.75595 0.92410 0.90528 0.83777 0.92241 0.87524 0.77995 0.91204 0.91440 0.89629 0.91449 0.92832 0.91052 0.92756 0.92100 0.93280 0.89539 0.92291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 9.67 71.98 0.70 -1.33 16 2 C -0.10 -1.93 4.75 30.60 0.15 -1.79 16 3 C -0.10 -1.81 2.73 -11.54 -0.03 -1.84 16 4 H 0.12 1.49 8.14 -2.39 -0.02 1.47 16 5 C -0.15 -2.65 8.84 71.98 0.64 -2.01 16 6 C 0.51 11.83 7.15 87.66 0.63 12.46 16 7 O -0.58 -18.12 15.91 -3.05 -0.05 -18.16 16 8 N -0.72 -13.63 4.93 -463.05 -2.28 -15.92 16 9 C 0.09 1.77 3.87 86.38 0.33 2.10 16 10 C 0.11 2.11 0.30 3.53 0.00 2.11 16 11 N -0.65 -16.70 4.02 -474.16 -1.90 -18.61 16 12 C 0.06 1.87 5.28 85.56 0.45 2.32 16 13 C 0.45 20.14 7.83 87.66 0.69 20.83 16 14 O -0.60 -32.14 15.89 -3.07 -0.05 -32.18 16 15 N -0.60 -28.27 5.09 -306.99 -1.56 -29.83 16 16 C -0.32 -18.87 10.16 84.04 0.85 -18.01 16 17 H 0.06 4.12 7.39 -2.91 -0.02 4.10 16 18 C -0.01 -0.57 5.50 84.92 0.47 -0.10 16 19 N -0.93 -56.29 13.96 21.66 0.30 -55.99 16 20 Si 0.96 39.89 27.74 68.60 1.90 41.79 16 21 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 22 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 23 H -0.24 -8.56 6.52 99.48 0.65 -7.91 16 24 C -0.10 -1.48 4.67 30.59 0.14 -1.33 16 25 C -0.11 -1.98 5.77 30.59 0.18 -1.80 16 26 C -0.11 -1.92 5.92 30.59 0.18 -1.74 16 27 C -0.11 -2.27 5.77 30.59 0.18 -2.09 16 28 C -0.10 -1.84 4.50 30.59 0.14 -1.71 16 29 H 0.06 0.81 6.56 -2.39 -0.02 0.80 16 30 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.06 1.21 7.95 -2.39 -0.02 1.20 16 34 H 0.09 1.31 6.56 -2.39 -0.02 1.29 16 35 H 0.06 1.12 7.56 -2.38 -0.02 1.11 16 36 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.41 6.42 5.82 -92.71 -0.54 5.88 16 38 H 0.06 1.34 6.76 -2.39 -0.02 1.33 16 39 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 40 H 0.34 9.00 7.28 -89.69 -0.65 8.35 16 41 H 0.06 1.70 6.60 -2.39 -0.02 1.69 16 42 H 0.11 2.95 6.22 -2.39 -0.01 2.93 16 43 H 0.39 15.73 5.76 -92.70 -0.53 15.20 16 44 H 0.28 15.41 8.31 -92.71 -0.77 14.64 16 45 H 0.07 0.91 7.09 -2.38 -0.02 0.89 16 46 H 0.09 1.04 8.14 -2.38 -0.02 1.02 16 47 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 48 H 0.05 1.27 7.60 -2.39 -0.02 1.25 16 49 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 50 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 51 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 52 H 0.05 1.35 7.60 -2.39 -0.02 1.33 16 53 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 54 H 0.06 1.14 6.43 -2.39 -0.02 1.13 16 Total: -1.00 -76.50 410.17 1.17 -75.33 By element: Atomic # 1 Polarization: 48.37 SS G_CDS: -0.87 Total: 47.50 kcal Atomic # 6 Polarization: 0.38 SS G_CDS: 5.68 Total: 6.07 kcal Atomic # 7 Polarization: -114.90 SS G_CDS: -5.45 Total: -120.34 kcal Atomic # 8 Polarization: -50.25 SS G_CDS: -0.10 Total: -50.35 kcal Atomic # 14 Polarization: 39.89 SS G_CDS: 1.90 Total: 41.79 kcal Total: -76.50 1.17 -75.33 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115414214.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.151 kcal (2) G-P(sol) polarization free energy of solvation -76.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds