Wall clock time and date at job start Sat Apr 11 2020 05:52:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47268 * 2 1 4 4 H 1.09003 * 109.47387 * 305.00062 * 3 2 1 5 5 C 1.53001 * 109.47455 * 64.99741 * 3 2 1 6 6 C 1.52994 * 109.47480 * 184.99970 * 3 2 1 7 7 H 1.08998 * 109.47131 * 299.99992 * 6 3 2 8 8 C 1.52995 * 109.47709 * 179.97438 * 6 3 2 9 9 C 1.50706 * 109.47222 * 59.99708 * 6 3 2 10 10 O 1.21281 * 119.99572 * 13.20446 * 9 6 3 11 11 N 1.34871 * 120.00147 * 193.21128 * 9 6 3 12 12 C 1.47761 * 121.44598 * 354.53525 * 11 9 6 13 13 C 1.52897 * 109.31287 * 96.43337 * 12 11 9 14 14 C 1.50766 * 109.55043 * 68.47737 * 13 12 11 15 15 O 1.21249 * 120.31764 * 65.88939 * 14 13 12 16 16 N 1.36021 * 118.88508 * 245.75987 * 14 13 12 17 17 C 1.47599 * 117.01794 * 169.58565 * 16 14 13 18 18 C 1.52987 * 108.83225 * 239.78317 * 17 16 14 19 19 N 1.47753 * 109.09251 * 64.93366 * 18 17 16 20 20 C 1.36988 * 121.49431 * 100.31398 * 19 18 17 21 21 H 1.07993 * 120.00433 * 331.38937 * 20 19 18 22 22 C 1.38816 * 119.99881 * 151.38759 * 20 19 18 23 23 N 1.31619 * 120.00084 * 346.39190 * 22 20 19 24 24 Si 1.86801 * 119.99983 * 166.38817 * 22 20 19 25 25 H 1.48503 * 109.47248 * 90.00041 * 24 22 20 26 26 H 1.48506 * 109.47159 * 210.00284 * 24 22 20 27 27 H 1.48505 * 109.46913 * 329.99887 * 24 22 20 28 28 C 1.47794 * 116.72438 * 279.98744 * 19 18 17 29 29 C 1.47729 * 121.77731 * 175.10859 * 11 9 6 30 30 H 1.08998 * 109.47279 * 300.00481 * 1 2 3 31 31 H 1.09000 * 109.46857 * 59.99904 * 1 2 3 32 32 H 1.08994 * 109.47018 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47279 * 239.99519 * 2 1 3 34 34 H 1.09000 * 109.46857 * 120.00096 * 2 1 3 35 35 H 1.08994 * 109.47366 * 180.02562 * 5 3 2 36 36 H 1.09005 * 109.47180 * 300.00113 * 5 3 2 37 37 H 1.08998 * 109.46771 * 60.00244 * 5 3 2 38 38 H 1.09008 * 109.47217 * 70.25842 * 8 6 3 39 39 H 1.08999 * 109.47808 * 190.26238 * 8 6 3 40 40 H 1.09000 * 109.47016 * 310.26317 * 8 6 3 41 41 H 1.09032 * 109.53274 * 216.57504 * 12 11 9 42 42 H 1.09099 * 109.46764 * 336.44430 * 12 11 9 43 43 H 1.09105 * 109.40157 * 188.24201 * 13 12 11 44 44 H 1.08949 * 109.72707 * 308.19488 * 13 12 11 45 45 H 0.97138 * 121.55069 * 350.75743 * 16 14 13 46 46 H 1.08874 * 110.03630 * 359.96509 * 17 16 14 47 47 H 1.09122 * 109.44283 * 120.25978 * 17 16 14 48 48 H 1.09018 * 109.55149 * 184.84459 * 18 17 16 49 49 H 1.09009 * 109.56895 * 304.99692 * 18 17 16 50 50 H 0.97006 * 119.99646 * 180.02562 * 23 22 20 51 51 H 1.08971 * 109.36798 * 6.31974 * 28 19 18 52 52 H 1.09150 * 109.25231 * 246.66487 * 28 19 18 53 53 H 1.09160 * 109.30335 * 60.42850 * 29 11 9 54 54 H 1.09030 * 109.35123 * 180.02562 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 1.6353 2.1266 1.3073 6 6 3.5648 1.4443 -0.1257 7 1 3.9994 0.9053 0.7161 8 6 4.0748 2.8868 -0.1264 9 6 3.9636 0.7705 -1.4134 10 8 3.1291 0.5476 -2.2648 11 7 5.2483 0.4153 -1.6190 12 6 6.3112 0.7765 -0.6581 13 6 6.5591 -0.3992 0.2873 14 6 7.1852 -1.5379 -0.4770 15 8 8.2977 -1.4223 -0.9453 16 7 6.4826 -2.6928 -0.6282 17 6 7.0242 -3.6882 -1.5739 18 6 5.9877 -3.9431 -2.6699 19 7 5.7974 -2.7043 -3.4525 20 6 6.4023 -2.5260 -4.6686 21 1 7.3416 -3.0146 -4.8813 22 6 5.8079 -1.7173 -5.6275 23 7 4.5550 -1.3400 -5.4854 24 14 6.7862 -1.1645 -7.1198 25 1 6.6236 -2.1559 -8.2134 26 1 6.2902 0.1595 -7.5741 27 1 8.2225 -1.0575 -6.7581 28 6 4.9180 -1.6737 -2.8620 29 6 5.6641 -0.3410 -2.8179 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5139 0.8900 35 1 1.9982 3.1543 1.3071 36 1 0.5489 2.1253 1.3969 37 1 2.0699 1.5876 2.1491 38 1 3.9494 3.3170 0.8674 39 1 5.1307 2.8988 -0.3969 40 1 3.5077 3.4723 -0.8499 41 1 7.2280 1.0108 -1.1997 42 1 5.9992 1.6488 -0.0818 43 1 7.2344 -0.0866 1.0852 44 1 5.6152 -0.7274 0.7215 45 1 5.6523 -2.8490 -0.1489 46 1 7.9452 -3.3165 -2.0199 47 1 7.2277 -4.6199 -1.0435 48 1 6.3394 -4.7390 -3.3267 49 1 5.0412 -4.2372 -2.2161 50 1 4.1395 -0.7752 -6.1557 51 1 4.6334 -1.9755 -1.8544 52 1 4.0211 -1.5713 -3.4757 53 1 5.4276 0.2402 -3.7112 54 1 6.7390 -0.5188 -2.7781 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001131392891.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:00 Heat of formation + Delta-G solvation = -71.629469 kcal Electronic energy + Delta-G solvation = -33617.660207 eV Core-core repulsion = 29589.310524 eV Total energy + Delta-G solvation = -4028.349683 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.49840 -40.38812 -38.04479 -37.40666 -36.72572 -35.34795 -33.40031 -33.18581 -31.92921 -30.84707 -29.39600 -28.37778 -26.88337 -25.97803 -25.09107 -24.18775 -22.80518 -22.07355 -21.24474 -20.96123 -19.71815 -18.63675 -18.24194 -17.72444 -17.44526 -16.74717 -16.51794 -16.40433 -15.92083 -15.78683 -15.57466 -15.24917 -14.96326 -14.69310 -14.59245 -14.32831 -14.23763 -13.95438 -13.85032 -13.64409 -13.31227 -13.24632 -13.15430 -12.94153 -12.83066 -12.74030 -12.59010 -12.46267 -12.40543 -12.27053 -12.18301 -12.11671 -11.95078 -11.84805 -11.51620 -11.39625 -11.37304 -11.22198 -10.77406 -10.65416 -10.33430 -9.91193 -9.59921 -8.59524 -7.68645 -5.33691 1.38460 1.41232 1.49251 1.71143 1.87672 2.09763 2.48706 2.54683 3.32992 3.53065 3.67323 3.78226 3.84676 3.99915 4.08637 4.21943 4.29679 4.34027 4.43009 4.47283 4.49676 4.51898 4.58722 4.63070 4.68138 4.70134 4.71611 4.78445 4.81333 4.86271 4.87919 4.96203 5.00251 5.02841 5.04395 5.20078 5.20437 5.26484 5.27253 5.32093 5.39000 5.42136 5.59349 5.61031 5.63626 5.68382 5.72313 5.97527 6.34883 6.70677 6.75515 7.15461 7.42609 7.44464 7.85542 8.40153 9.19296 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.010790 B = 0.004828 C = 0.004184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2594.262703 B = 5797.925770 C = 6690.595428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.126 4.126 3 C -0.069 4.069 4 H 0.046 0.954 5 C -0.140 4.140 6 C -0.096 4.096 7 H 0.123 0.877 8 C -0.148 4.148 9 C 0.507 3.493 10 O -0.570 6.570 11 N -0.619 5.619 12 C 0.104 3.896 13 C -0.150 4.150 14 C 0.514 3.486 15 O -0.588 6.588 16 N -0.717 5.717 17 C 0.098 3.902 18 C 0.123 3.877 19 N -0.606 5.606 20 C -0.252 4.252 21 H 0.059 0.941 22 C -0.039 4.039 23 N -0.911 5.911 24 Si 0.946 3.054 25 H -0.281 1.281 26 H -0.299 1.299 27 H -0.275 1.275 28 C 0.181 3.819 29 C 0.145 3.855 30 H 0.075 0.925 31 H 0.034 0.966 32 H 0.049 0.951 33 H 0.036 0.964 34 H 0.074 0.926 35 H 0.068 0.932 36 H 0.059 0.941 37 H 0.073 0.927 38 H 0.104 0.896 39 H 0.068 0.932 40 H 0.045 0.955 41 H 0.066 0.934 42 H 0.136 0.864 43 H 0.138 0.862 44 H 0.108 0.892 45 H 0.413 0.587 46 H 0.058 0.942 47 H 0.089 0.911 48 H 0.061 0.939 49 H 0.047 0.953 50 H 0.241 0.759 51 H 0.041 0.959 52 H 0.033 0.967 53 H 0.015 0.985 54 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.622 5.540 22.126 22.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.163 4.163 3 C -0.088 4.088 4 H 0.065 0.935 5 C -0.197 4.197 6 C -0.117 4.117 7 H 0.141 0.859 8 C -0.205 4.205 9 C 0.297 3.703 10 O -0.448 6.448 11 N -0.353 5.353 12 C -0.018 4.018 13 C -0.191 4.191 14 C 0.302 3.698 15 O -0.468 6.468 16 N -0.371 5.371 17 C -0.028 4.028 18 C -0.003 4.003 19 N -0.330 5.330 20 C -0.383 4.383 21 H 0.077 0.923 22 C -0.236 4.236 23 N -0.557 5.557 24 Si 0.775 3.225 25 H -0.207 1.207 26 H -0.226 1.226 27 H -0.201 1.201 28 C 0.055 3.945 29 C 0.021 3.979 30 H 0.094 0.906 31 H 0.054 0.946 32 H 0.068 0.932 33 H 0.055 0.945 34 H 0.093 0.907 35 H 0.087 0.913 36 H 0.078 0.922 37 H 0.092 0.908 38 H 0.123 0.877 39 H 0.086 0.914 40 H 0.064 0.936 41 H 0.085 0.915 42 H 0.154 0.846 43 H 0.156 0.844 44 H 0.126 0.874 45 H 0.250 0.750 46 H 0.077 0.923 47 H 0.107 0.893 48 H 0.079 0.921 49 H 0.065 0.935 50 H 0.051 0.949 51 H 0.059 0.941 52 H 0.051 0.949 53 H 0.033 0.967 54 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.423 5.578 21.203 22.058 hybrid contribution 0.115 0.004 -1.957 1.960 sum -2.308 5.582 19.246 20.172 Atomic orbital electron populations 1.21736 0.95571 1.01354 1.01595 1.21638 0.96525 0.96764 1.01374 1.20931 0.92337 0.96395 0.99167 0.93538 1.21881 1.01793 1.00791 0.95279 1.21484 0.97917 0.98337 0.93934 0.85922 1.21997 1.01148 0.92927 1.04406 1.21505 0.80862 0.78088 0.89828 1.90747 1.50815 1.55721 1.47529 1.49041 1.07798 1.55539 1.22926 1.22201 0.90730 0.97793 0.91083 1.22262 1.04068 0.93573 0.99203 1.21439 0.84790 0.84246 0.79278 1.90656 1.21535 1.82362 1.52284 1.46438 1.27316 1.18400 1.44908 1.22205 0.97896 0.91819 0.90918 1.21641 0.96861 0.88817 0.93015 1.44668 1.55976 1.14153 1.18183 1.19146 1.00835 1.27707 0.90587 0.92319 1.25654 0.95829 1.02545 0.99595 1.70147 1.11427 1.38898 1.35193 0.85594 0.78674 0.77119 0.81089 1.20741 1.22580 1.20069 1.20950 0.93483 0.86337 0.93692 1.21736 0.97470 0.93336 0.85317 0.90642 0.94641 0.93166 0.94478 0.90714 0.91312 0.92163 0.90826 0.87688 0.91350 0.93602 0.91542 0.84647 0.84406 0.87388 0.75002 0.92299 0.89324 0.92071 0.93483 0.94913 0.94081 0.94928 0.96687 0.92728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.21 9.67 71.98 0.70 -2.51 16 2 C -0.13 -3.05 5.15 30.59 0.16 -2.89 16 3 C -0.07 -1.49 1.57 -10.80 -0.02 -1.51 16 4 H 0.05 1.30 7.96 -2.39 -0.02 1.28 16 5 C -0.14 -1.85 8.61 71.98 0.62 -1.23 16 6 C -0.10 -1.98 1.51 -11.54 -0.02 -2.00 16 7 H 0.12 1.72 7.42 -2.39 -0.02 1.70 16 8 C -0.15 -2.38 8.10 71.98 0.58 -1.79 16 9 C 0.51 17.11 6.07 87.64 0.53 17.64 16 10 O -0.57 -26.00 13.59 -3.03 -0.04 -26.04 16 11 N -0.62 -21.07 2.61 -815.43 -2.13 -23.19 16 12 C 0.10 2.48 5.05 86.10 0.44 2.91 16 13 C -0.15 -2.97 6.09 29.83 0.18 -2.79 16 14 C 0.51 15.80 5.06 87.48 0.44 16.25 16 15 O -0.59 -23.76 15.93 -2.93 -0.05 -23.81 16 16 N -0.72 -20.44 3.67 -458.91 -1.69 -22.13 16 17 C 0.10 3.21 6.67 86.16 0.57 3.79 16 18 C 0.12 4.79 6.07 86.13 0.52 5.31 16 19 N -0.61 -30.20 2.70 -695.64 -1.88 -32.08 16 20 C -0.25 -14.18 9.14 84.03 0.77 -13.41 16 21 H 0.06 3.30 7.86 -2.91 -0.02 3.27 16 22 C -0.04 -2.29 4.61 84.86 0.39 -1.89 16 23 N -0.91 -56.49 10.15 21.65 0.22 -56.27 16 24 Si 0.95 47.62 29.57 68.60 2.03 49.65 16 25 H -0.28 -13.74 7.11 99.48 0.71 -13.03 16 26 H -0.30 -15.35 7.11 99.48 0.71 -14.64 16 27 H -0.28 -13.51 7.11 99.48 0.71 -12.80 16 28 C 0.18 8.82 3.67 86.06 0.32 9.14 16 29 C 0.15 6.81 4.03 86.08 0.35 7.15 16 30 H 0.07 1.26 6.56 -2.39 -0.02 1.25 16 31 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.04 1.26 5.91 -2.39 -0.01 1.24 16 34 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.07 0.75 6.67 -2.39 -0.02 0.73 16 36 H 0.06 0.79 6.57 -2.38 -0.02 0.77 16 37 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 38 H 0.10 0.95 7.02 -2.38 -0.02 0.93 16 39 H 0.07 1.06 5.53 -2.39 -0.01 1.05 16 40 H 0.04 0.91 8.11 -2.39 -0.02 0.89 16 41 H 0.07 1.88 7.82 -2.37 -0.02 1.86 16 42 H 0.14 2.06 4.35 -2.33 -0.01 2.05 16 43 H 0.14 1.81 8.15 -2.33 -0.02 1.80 16 44 H 0.11 1.57 7.54 -2.41 -0.02 1.55 16 45 H 0.41 9.31 8.37 -92.61 -0.78 8.54 16 46 H 0.06 2.39 6.80 -2.45 -0.02 2.37 16 47 H 0.09 2.25 8.15 -2.32 -0.02 2.24 16 48 H 0.06 2.38 8.02 -2.38 -0.02 2.36 16 49 H 0.05 1.69 8.07 -2.38 -0.02 1.67 16 50 H 0.24 14.99 8.31 -92.70 -0.77 14.22 16 51 H 0.04 1.76 6.15 -2.40 -0.01 1.74 16 52 H 0.03 1.98 5.96 -2.31 -0.01 1.97 16 53 H 0.01 0.84 7.23 -2.30 -0.02 0.82 16 54 H 0.05 2.75 6.21 -2.37 -0.01 2.73 16 Total: -1.00 -82.24 393.92 3.13 -79.12 By element: Atomic # 1 Polarization: 22.47 SS G_CDS: 0.13 Total: 22.60 kcal Atomic # 6 Polarization: 25.62 SS G_CDS: 6.53 Total: 32.16 kcal Atomic # 7 Polarization: -128.20 SS G_CDS: -5.47 Total: -133.67 kcal Atomic # 8 Polarization: -49.76 SS G_CDS: -0.09 Total: -49.85 kcal Atomic # 14 Polarization: 47.62 SS G_CDS: 2.03 Total: 49.65 kcal Total: -82.24 3.13 -79.12 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131392891.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.487 kcal (2) G-P(sol) polarization free energy of solvation -82.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds