Wall clock time and date at job start Sat Apr 11 2020 05:52:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47586 * 2 1 4 4 H 1.09002 * 109.47076 * 305.00584 * 3 2 1 5 5 C 1.52994 * 109.46838 * 65.00003 * 3 2 1 6 6 C 1.52991 * 109.47415 * 185.00274 * 3 2 1 7 7 H 1.09002 * 109.47252 * 300.00202 * 6 3 2 8 8 C 1.53004 * 109.47261 * 60.00127 * 6 3 2 9 9 C 1.50698 * 109.47331 * 179.97438 * 6 3 2 10 10 O 1.21285 * 120.00106 * 325.14882 * 9 6 3 11 11 N 1.34856 * 120.00241 * 145.14159 * 9 6 3 12 12 C 1.47757 * 121.46257 * 5.74494 * 11 9 6 13 13 C 1.52906 * 109.31917 * 264.27886 * 12 11 9 14 14 C 1.50760 * 109.53679 * 292.07923 * 13 12 11 15 15 O 1.21262 * 120.24790 * 294.62529 * 14 13 12 16 16 N 1.36007 * 118.96048 * 114.78365 * 14 13 12 17 17 C 1.47596 * 117.03548 * 189.53090 * 16 14 13 18 18 C 1.52992 * 108.82819 * 118.28240 * 17 16 14 19 19 N 1.47754 * 109.12635 * 295.66214 * 18 17 16 20 20 C 1.36981 * 121.47546 * 261.04530 * 19 18 17 21 21 H 1.08002 * 120.00168 * 25.13453 * 20 19 18 22 22 C 1.38812 * 120.00035 * 205.14426 * 20 19 18 23 23 N 1.31621 * 119.99710 * 14.84474 * 22 20 19 24 24 Si 1.86795 * 120.00105 * 194.84288 * 22 20 19 25 25 H 1.48497 * 109.47108 * 59.99940 * 24 22 20 26 26 H 1.48501 * 109.47430 * 179.97438 * 24 22 20 27 27 H 1.48498 * 109.47145 * 299.99985 * 24 22 20 28 28 C 1.47786 * 116.73127 * 81.43309 * 19 18 17 29 29 C 1.47731 * 121.78646 * 185.12843 * 11 9 6 30 30 H 1.08998 * 109.46461 * 299.99981 * 1 2 3 31 31 H 1.08998 * 109.47038 * 59.99827 * 1 2 3 32 32 H 1.08999 * 109.47475 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.47163 * 239.99941 * 2 1 3 34 34 H 1.09005 * 109.47256 * 120.00465 * 2 1 3 35 35 H 1.09000 * 109.47550 * 60.00409 * 5 3 2 36 36 H 1.09001 * 109.47129 * 180.02562 * 5 3 2 37 37 H 1.09001 * 109.47431 * 300.00280 * 5 3 2 38 38 H 1.08994 * 109.47123 * 173.85528 * 8 6 3 39 39 H 1.09004 * 109.46803 * 293.85555 * 8 6 3 40 40 H 1.08994 * 109.47284 * 53.85241 * 8 6 3 41 41 H 1.09097 * 109.45068 * 24.25122 * 12 11 9 42 42 H 1.09055 * 109.55039 * 144.15067 * 12 11 9 43 43 H 1.08942 * 109.73010 * 52.33116 * 13 12 11 44 44 H 1.09092 * 109.40904 * 172.28983 * 13 12 11 45 45 H 0.97134 * 121.52849 * 8.47721 * 16 14 13 46 46 H 1.08857 * 110.05228 * 358.08323 * 17 16 14 47 47 H 1.09123 * 109.43421 * 237.78110 * 17 16 14 48 48 H 1.09042 * 109.54131 * 175.79016 * 18 17 16 49 49 H 1.09009 * 109.57565 * 55.63581 * 18 17 16 50 50 H 0.97008 * 119.99548 * 180.02562 * 23 22 20 51 51 H 1.08976 * 109.36115 * 352.42966 * 28 19 18 52 52 H 1.09173 * 109.22873 * 112.03724 * 28 19 18 53 53 H 1.09182 * 109.26458 * 299.60478 * 29 11 9 54 54 H 1.09011 * 109.34029 * 180.02562 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6354 2.1264 1.3073 6 6 3.5648 1.4442 -0.1258 7 1 3.9995 0.9051 0.7160 8 6 3.9696 0.7602 -1.4332 9 6 4.0672 2.8650 -0.1264 10 8 3.4105 3.7402 -0.6496 11 7 5.2469 3.1634 0.4548 12 6 6.1315 2.1080 0.9905 13 6 5.8760 1.9464 2.4894 14 6 6.3450 3.1808 3.2168 15 8 7.5231 3.4671 3.2373 16 7 5.4277 3.9612 3.8488 17 6 5.8944 5.2647 4.3603 18 6 5.1175 6.3784 3.6556 19 7 5.4411 6.3572 2.2141 20 6 6.3618 7.2163 1.6751 21 1 7.1434 7.6292 2.2957 22 6 6.2902 7.5566 0.3312 23 7 5.1960 7.3021 -0.3546 24 14 7.7466 8.3756 -0.5038 25 1 8.9303 7.4826 -0.4224 26 1 7.4192 8.6339 -1.9291 27 1 8.0485 9.6608 0.1760 28 6 4.7171 5.3714 1.3847 29 6 5.7247 4.5561 0.5757 30 1 -0.3632 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 2.0700 1.5874 2.1492 36 1 1.9984 3.1542 1.3072 37 1 0.5491 2.1252 1.3969 38 1 5.0457 0.8574 -1.5761 39 1 3.7028 -0.2957 -1.3885 40 1 3.4484 1.2316 -2.2664 41 1 5.9229 1.1660 0.4812 42 1 7.1730 2.3858 0.8246 43 1 4.8110 1.8017 2.6674 44 1 6.4251 1.0794 2.8594 45 1 4.5028 3.6808 3.9458 46 1 6.9592 5.3819 4.1670 47 1 5.7120 5.3195 5.4348 48 1 5.3995 7.3434 4.0779 49 1 4.0476 6.2201 3.7920 50 1 5.1461 7.5395 -1.2939 51 1 4.1361 4.7132 2.0304 52 1 4.0436 5.8981 0.7058 53 1 5.8285 4.9891 -0.4212 54 1 6.6941 4.5632 1.0743 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001131392893.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:07 Heat of formation + Delta-G solvation = -76.048635 kcal Electronic energy + Delta-G solvation = -33627.259976 eV Core-core repulsion = 29598.718664 eV Total energy + Delta-G solvation = -4028.541313 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.46661 -40.35881 -38.06887 -37.48198 -36.71984 -35.34864 -33.23325 -32.98621 -31.93628 -30.75699 -30.11986 -28.48123 -26.43582 -25.32617 -25.08806 -24.75980 -23.12821 -22.06062 -21.25381 -20.80957 -19.59062 -18.65737 -18.26614 -17.73415 -17.40659 -16.67622 -16.48083 -16.42579 -15.96712 -15.71208 -15.42009 -15.26094 -15.04896 -14.74194 -14.56425 -14.34085 -14.28098 -14.01032 -13.83355 -13.61223 -13.41198 -13.20121 -13.13893 -12.88921 -12.76883 -12.72239 -12.67197 -12.53807 -12.48386 -12.39826 -12.13237 -12.02222 -11.94039 -11.81494 -11.55320 -11.50038 -11.34747 -11.22685 -10.77803 -10.66138 -10.38482 -9.92070 -9.61342 -8.62137 -7.69436 -5.29873 1.39307 1.42437 1.47887 1.72680 1.86270 2.09879 2.49221 2.55265 3.32821 3.52379 3.66775 3.77738 3.85217 4.00670 4.08983 4.19467 4.33482 4.34855 4.42007 4.44364 4.47255 4.51611 4.61601 4.63981 4.68351 4.71564 4.73645 4.79238 4.81575 4.84079 4.87126 4.94415 4.97625 5.01100 5.02994 5.18679 5.19939 5.26522 5.29101 5.33528 5.35352 5.40367 5.57787 5.61686 5.63239 5.64799 5.72720 5.94900 6.32251 6.70405 6.76257 7.15022 7.43297 7.44434 7.85950 8.38877 9.19973 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.012000 B = 0.004595 C = 0.004032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2332.734459 B = 6092.105342 C = 6942.392667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.111 4.111 3 C -0.072 4.072 4 H 0.047 0.953 5 C -0.148 4.148 6 C -0.096 4.096 7 H 0.122 0.878 8 C -0.141 4.141 9 C 0.512 3.488 10 O -0.577 6.577 11 N -0.620 5.620 12 C 0.111 3.889 13 C -0.150 4.150 14 C 0.514 3.486 15 O -0.587 6.587 16 N -0.717 5.717 17 C 0.097 3.903 18 C 0.123 3.877 19 N -0.607 5.607 20 C -0.251 4.251 21 H 0.062 0.938 22 C -0.042 4.042 23 N -0.913 5.913 24 Si 0.946 3.054 25 H -0.286 1.286 26 H -0.298 1.298 27 H -0.272 1.272 28 C 0.188 3.812 29 C 0.145 3.855 30 H 0.054 0.946 31 H 0.041 0.959 32 H 0.066 0.934 33 H 0.075 0.925 34 H 0.083 0.917 35 H 0.077 0.923 36 H 0.021 0.979 37 H 0.062 0.938 38 H 0.058 0.942 39 H 0.104 0.896 40 H 0.041 0.959 41 H 0.130 0.870 42 H 0.067 0.933 43 H 0.108 0.892 44 H 0.139 0.861 45 H 0.412 0.588 46 H 0.059 0.941 47 H 0.090 0.910 48 H 0.060 0.940 49 H 0.048 0.952 50 H 0.241 0.759 51 H 0.040 0.960 52 H 0.027 0.973 53 H 0.020 0.980 54 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.416 -21.557 6.607 23.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.148 4.148 3 C -0.091 4.091 4 H 0.066 0.934 5 C -0.205 4.205 6 C -0.117 4.117 7 H 0.140 0.860 8 C -0.198 4.198 9 C 0.302 3.698 10 O -0.456 6.456 11 N -0.354 5.354 12 C -0.012 4.012 13 C -0.191 4.191 14 C 0.302 3.698 15 O -0.468 6.468 16 N -0.370 5.370 17 C -0.029 4.029 18 C -0.003 4.003 19 N -0.330 5.330 20 C -0.382 4.382 21 H 0.080 0.920 22 C -0.238 4.238 23 N -0.559 5.559 24 Si 0.775 3.225 25 H -0.213 1.213 26 H -0.224 1.224 27 H -0.198 1.198 28 C 0.062 3.938 29 C 0.021 3.979 30 H 0.073 0.927 31 H 0.060 0.940 32 H 0.085 0.915 33 H 0.093 0.907 34 H 0.102 0.898 35 H 0.096 0.904 36 H 0.040 0.960 37 H 0.081 0.919 38 H 0.077 0.923 39 H 0.122 0.878 40 H 0.060 0.940 41 H 0.148 0.852 42 H 0.085 0.915 43 H 0.126 0.874 44 H 0.156 0.844 45 H 0.250 0.750 46 H 0.078 0.922 47 H 0.108 0.892 48 H 0.079 0.921 49 H 0.066 0.934 50 H 0.051 0.949 51 H 0.058 0.942 52 H 0.044 0.956 53 H 0.038 0.962 54 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -6.010 -20.799 6.168 22.512 hybrid contribution 0.561 1.543 -0.970 1.907 sum -5.449 -19.257 5.198 20.677 Atomic orbital electron populations 1.21828 0.95940 1.02009 1.01476 1.21595 0.95873 0.93880 1.03488 1.20992 0.92180 0.97791 0.98177 0.93431 1.21884 1.01843 0.99236 0.97556 1.21505 0.97563 0.90396 1.02278 0.85997 1.21813 1.01430 1.02031 0.94541 1.21439 0.79721 0.92155 0.76459 1.90745 1.57569 1.51559 1.45713 1.49102 1.19933 1.07461 1.58886 1.21982 0.94247 0.92472 0.92453 1.22265 1.05158 0.96468 0.95237 1.21409 0.85452 0.85554 0.77337 1.90663 1.19006 1.74800 1.62288 1.46402 1.12806 1.18764 1.59022 1.22207 0.99807 0.83234 0.97653 1.21648 0.97106 0.97268 0.84322 1.44702 1.47011 1.37912 1.03406 1.19182 1.04537 1.20733 0.93737 0.92038 1.25555 0.98481 1.01060 0.98705 1.70184 1.26164 1.51618 1.07940 0.85659 0.80313 0.79083 0.77434 1.21306 1.22402 1.19800 1.20868 0.92656 0.88630 0.91643 1.21802 0.97174 0.80191 0.98715 0.92651 0.93997 0.91461 0.90657 0.89826 0.90430 0.95956 0.91891 0.92259 0.87763 0.94002 0.85222 0.91482 0.87363 0.84361 0.75036 0.92236 0.89154 0.92110 0.93371 0.94920 0.94161 0.95551 0.96183 0.92812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.13 9.67 71.98 0.70 -1.44 16 2 C -0.11 -1.47 5.19 30.59 0.16 -1.31 16 3 C -0.07 -1.52 1.66 -10.80 -0.02 -1.54 16 4 H 0.05 1.33 7.85 -2.39 -0.02 1.31 16 5 C -0.15 -3.22 8.69 71.98 0.63 -2.60 16 6 C -0.10 -2.03 1.51 -11.54 -0.02 -2.05 16 7 H 0.12 1.68 6.16 -2.39 -0.01 1.67 16 8 C -0.14 -2.55 8.49 71.98 0.61 -1.93 16 9 C 0.51 17.51 5.36 87.64 0.47 17.98 16 10 O -0.58 -26.84 15.05 -3.04 -0.05 -26.88 16 11 N -0.62 -21.42 2.60 -815.43 -2.12 -23.54 16 12 C 0.11 2.68 5.13 86.11 0.44 3.12 16 13 C -0.15 -2.99 5.93 29.84 0.18 -2.82 16 14 C 0.51 15.90 5.09 87.48 0.45 16.34 16 15 O -0.59 -23.94 15.86 -2.97 -0.05 -23.98 16 16 N -0.72 -20.38 3.71 -458.94 -1.70 -22.08 16 17 C 0.10 3.17 6.68 86.17 0.58 3.75 16 18 C 0.12 4.77 6.06 86.14 0.52 5.29 16 19 N -0.61 -30.27 2.72 -695.59 -1.89 -32.16 16 20 C -0.25 -14.16 9.15 84.03 0.77 -13.39 16 21 H 0.06 3.44 7.87 -2.91 -0.02 3.42 16 22 C -0.04 -2.41 4.52 84.86 0.38 -2.03 16 23 N -0.91 -56.65 9.75 21.65 0.21 -56.44 16 24 Si 0.95 47.70 29.58 68.60 2.03 49.73 16 25 H -0.29 -14.36 7.11 99.48 0.71 -13.65 16 26 H -0.30 -15.21 7.11 99.48 0.71 -14.50 16 27 H -0.27 -13.14 7.11 99.48 0.71 -12.43 16 28 C 0.19 9.21 3.65 86.06 0.31 9.53 16 29 C 0.15 6.87 3.90 86.07 0.34 7.21 16 30 H 0.05 0.78 6.56 -2.39 -0.02 0.76 16 31 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.07 0.86 6.31 -2.39 -0.02 0.85 16 34 H 0.08 0.79 8.14 -2.38 -0.02 0.77 16 35 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.02 0.66 6.82 -2.39 -0.02 0.64 16 37 H 0.06 1.27 6.56 -2.39 -0.02 1.25 16 38 H 0.06 1.06 7.70 -2.39 -0.02 1.04 16 39 H 0.10 1.13 6.66 -2.38 -0.02 1.12 16 40 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 41 H 0.13 1.96 6.01 -2.34 -0.01 1.94 16 42 H 0.07 1.93 7.79 -2.36 -0.02 1.91 16 43 H 0.11 1.58 7.60 -2.42 -0.02 1.56 16 44 H 0.14 1.83 8.15 -2.34 -0.02 1.81 16 45 H 0.41 9.24 8.45 -92.61 -0.78 8.46 16 46 H 0.06 2.40 6.78 -2.46 -0.02 2.38 16 47 H 0.09 2.26 8.15 -2.32 -0.02 2.24 16 48 H 0.06 2.35 8.03 -2.36 -0.02 2.33 16 49 H 0.05 1.72 8.05 -2.38 -0.02 1.70 16 50 H 0.24 15.04 8.31 -92.70 -0.77 14.27 16 51 H 0.04 1.74 6.22 -2.40 -0.01 1.72 16 52 H 0.03 1.62 6.16 -2.30 -0.01 1.61 16 53 H 0.02 1.14 6.88 -2.29 -0.02 1.13 16 54 H 0.05 2.75 6.13 -2.38 -0.01 2.74 16 Total: -1.00 -82.76 397.19 3.04 -79.72 By element: Atomic # 1 Polarization: 21.40 SS G_CDS: 0.11 Total: 21.52 kcal Atomic # 6 Polarization: 27.63 SS G_CDS: 6.49 Total: 34.11 kcal Atomic # 7 Polarization: -128.72 SS G_CDS: -5.50 Total: -134.22 kcal Atomic # 8 Polarization: -50.78 SS G_CDS: -0.09 Total: -50.87 kcal Atomic # 14 Polarization: 47.70 SS G_CDS: 2.03 Total: 49.73 kcal Total: -82.76 3.04 -79.72 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131392893.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.673 kcal (2) G-P(sol) polarization free energy of solvation -82.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds