Wall clock time and date at job start Sat Apr 11 2020 05:49:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47292 * 2 1 4 4 N 1.46906 * 109.46870 * 119.99663 * 2 1 3 5 5 C 1.47011 * 110.99848 * 56.04550 * 4 2 1 6 6 C 1.53099 * 109.29346 * 182.37120 * 5 4 2 7 7 O 1.43022 * 109.25585 * 303.22213 * 6 5 4 8 8 C 1.43017 * 113.77628 * 58.59426 * 7 6 5 9 9 H 1.09007 * 109.53620 * 61.31926 * 8 7 6 10 10 C 1.50700 * 109.50565 * 181.42048 * 8 7 6 11 11 O 1.21282 * 120.00079 * 4.79236 * 10 8 7 12 12 N 1.34778 * 119.99956 * 184.78621 * 10 8 7 13 13 C 1.46503 * 119.99931 * 174.64208 * 12 10 8 14 14 C 1.52996 * 109.46987 * 184.87671 * 13 12 10 15 15 C 1.53001 * 109.47178 * 178.77598 * 14 13 12 16 16 C 1.53002 * 115.55111 * 40.17268 * 15 14 13 17 17 N 1.46505 * 109.47132 * 65.19558 * 16 15 14 18 18 C 1.36937 * 119.99807 * 185.12167 * 17 16 15 19 19 H 1.07999 * 120.00460 * 4.91440 * 18 17 16 20 20 C 1.38811 * 119.99673 * 184.91500 * 18 17 16 21 21 N 1.31621 * 120.00161 * 183.49339 * 20 18 17 22 22 Si 1.86809 * 120.00098 * 3.48851 * 20 18 17 23 23 H 1.48499 * 109.46731 * 91.18249 * 22 20 18 24 24 H 1.48496 * 109.47066 * 211.18279 * 22 20 18 25 25 H 1.48503 * 109.46741 * 331.18184 * 22 20 18 26 26 C 1.52996 * 117.50061 * 254.46835 * 15 14 13 27 27 C 1.52999 * 117.49950 * 185.84354 * 15 14 13 28 28 C 1.47015 * 110.99860 * 179.68248 * 4 2 1 29 29 H 1.09002 * 109.47026 * 300.00725 * 1 2 3 30 30 H 1.09003 * 109.46666 * 60.00213 * 1 2 3 31 31 H 1.08991 * 109.47263 * 180.02562 * 1 2 3 32 32 H 1.08993 * 109.47128 * 239.99223 * 2 1 3 33 33 H 1.08992 * 109.47363 * 179.97438 * 3 2 1 34 34 H 1.09007 * 109.46828 * 299.99933 * 3 2 1 35 35 H 1.09004 * 109.47464 * 59.99177 * 3 2 1 36 36 H 1.08997 * 109.50879 * 302.32170 * 5 4 2 37 37 H 1.08991 * 109.50945 * 62.41564 * 5 4 2 38 38 H 1.09003 * 109.50619 * 63.10350 * 6 5 4 39 39 H 1.08993 * 109.51005 * 183.23920 * 6 5 4 40 40 H 0.97000 * 119.99955 * 354.64432 * 12 10 8 41 41 H 1.08995 * 109.47114 * 304.87612 * 13 12 10 42 42 H 1.08999 * 109.47098 * 64.87638 * 13 12 10 43 43 H 1.09003 * 109.47504 * 298.77195 * 14 13 12 44 44 H 1.08995 * 109.47366 * 58.77849 * 14 13 12 45 45 H 1.09001 * 109.47786 * 185.19944 * 16 15 14 46 46 H 1.09007 * 109.46893 * 305.19789 * 16 15 14 47 47 H 0.96998 * 119.99549 * 5.12277 * 17 16 15 48 48 H 0.97000 * 120.00147 * 180.02562 * 21 20 18 49 49 H 1.09004 * 117.50038 * 359.97438 * 26 15 14 50 50 H 1.08997 * 117.50244 * 145.01981 * 26 15 14 51 51 H 1.09004 * 117.49698 * 214.98071 * 27 15 14 52 52 H 1.08997 * 117.50182 * 359.97438 * 27 15 14 53 53 H 1.08998 * 109.50341 * 297.54114 * 28 4 2 54 54 H 1.08994 * 109.50718 * 57.67026 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 1.4725 -2.0545 1.2818 6 6 1.9591 -2.7180 2.5729 7 8 3.3890 -2.7054 2.5997 8 6 3.9557 -1.3946 2.5217 9 1 3.6301 -0.8052 3.3790 10 6 5.4593 -1.4955 2.5224 11 8 5.9940 -2.5838 2.4957 12 7 6.2098 -0.3765 2.5525 13 6 7.6667 -0.4745 2.6716 14 6 8.2630 0.9281 2.8048 15 6 9.7816 0.8241 2.9599 16 6 10.4640 -0.2274 2.0826 17 7 10.3189 0.1439 0.6728 18 6 10.7606 -0.7040 -0.3075 19 1 11.1431 -1.6795 -0.0458 20 6 10.7168 -0.3097 -1.6377 21 7 11.0767 -1.1493 -2.5852 22 14 10.1470 1.4128 -2.0830 23 1 11.3188 2.3235 -2.1360 24 1 9.4805 1.3861 -3.4097 25 1 9.1889 1.8978 -1.0573 26 6 10.3685 1.0730 4.3507 27 6 10.5527 2.1144 3.2450 28 6 3.4892 -0.7187 1.2297 29 1 -0.3633 0.5140 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8901 35 1 1.6766 1.9564 0.8899 36 1 0.3834 -2.0097 1.2838 37 1 1.8113 -2.6353 0.4240 38 1 1.5749 -2.1680 3.4320 39 1 1.6028 -3.7474 2.6098 40 1 5.7853 0.4939 2.4953 41 1 7.9204 -1.0625 3.5536 42 1 8.0721 -0.9588 1.7832 43 1 8.0279 1.5092 1.9131 44 1 7.8413 1.4205 3.6810 45 1 11.5226 -0.2815 2.3369 46 1 9.9996 -1.1989 2.2521 47 1 9.9099 0.9904 0.4340 48 1 11.0464 -0.8736 -3.5148 49 1 9.6727 1.3113 5.1553 50 1 11.2408 0.4876 4.6411 51 1 11.5463 2.2141 2.8080 52 1 9.9782 3.0375 3.3218 53 1 3.8609 -1.2784 0.3715 54 1 3.8723 0.3011 1.1936 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166814738.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:08 Heat of formation + Delta-G solvation = -61.750670 kcal Electronic energy + Delta-G solvation = -30787.966818 eV Core-core repulsion = 26760.045512 eV Total energy + Delta-G solvation = -4027.921307 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.55176 -40.18649 -39.48526 -37.73508 -36.12649 -35.90484 -33.30476 -33.18668 -32.88485 -31.05456 -28.49332 -28.08499 -27.73229 -25.37148 -24.37799 -24.23880 -23.06469 -22.65228 -21.53030 -21.09723 -20.41528 -19.27185 -18.46875 -17.90718 -17.39520 -16.94596 -16.67043 -16.60960 -16.38059 -16.18247 -15.97618 -15.63808 -15.34113 -15.20281 -15.11600 -14.81565 -14.55856 -14.44161 -14.15132 -13.99277 -13.44502 -13.35700 -13.23908 -13.05896 -12.87653 -12.85272 -12.78801 -12.66423 -12.57737 -12.22536 -12.19273 -12.12434 -11.92029 -11.84396 -11.74451 -11.56706 -11.11538 -11.00565 -10.86326 -10.75973 -10.56386 -10.16248 -9.55023 -9.28429 -8.03973 -5.37082 1.32517 1.40013 1.42780 1.46523 1.75145 2.46916 2.58057 2.84531 2.98559 3.26670 3.57847 3.63571 3.70767 3.77386 3.85374 3.88272 3.94056 3.97029 4.04250 4.07742 4.12772 4.24649 4.35144 4.39223 4.41899 4.42206 4.47980 4.59196 4.62820 4.68357 4.82027 4.84923 4.87160 4.91503 4.94055 4.94276 4.98705 5.05206 5.10269 5.14259 5.22281 5.27266 5.30376 5.35905 5.37353 5.40069 5.74242 5.79894 5.91989 5.98427 6.20069 6.48076 7.07774 7.15583 7.83327 8.06444 9.18282 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.009730 B = 0.003041 C = 0.002698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2877.057307 B = 9204.094806 C =10374.701919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.069 3.931 3 C -0.146 4.146 4 N -0.522 5.522 5 C 0.010 3.990 6 C 0.059 3.941 7 O -0.393 6.393 8 C 0.089 3.911 9 H 0.123 0.877 10 C 0.511 3.489 11 O -0.574 6.574 12 N -0.707 5.707 13 C 0.126 3.874 14 C -0.072 4.072 15 C -0.149 4.149 16 C 0.187 3.813 17 N -0.746 5.746 18 C -0.234 4.234 19 H 0.046 0.954 20 C -0.067 4.067 21 N -0.987 5.987 22 Si 0.962 3.038 23 H -0.277 1.277 24 H -0.297 1.297 25 H -0.245 1.245 26 C -0.148 4.148 27 C -0.163 4.163 28 C 0.030 3.970 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.059 0.941 32 H 0.026 0.974 33 H 0.051 0.949 34 H 0.070 0.930 35 H 0.074 0.926 36 H 0.118 0.882 37 H 0.026 0.974 38 H 0.080 0.920 39 H 0.116 0.884 40 H 0.417 0.583 41 H 0.062 0.938 42 H 0.039 0.961 43 H 0.070 0.930 44 H 0.106 0.894 45 H 0.016 0.984 46 H 0.019 0.981 47 H 0.369 0.631 48 H 0.257 0.743 49 H 0.122 0.878 50 H 0.091 0.909 51 H 0.082 0.918 52 H 0.116 0.884 53 H 0.020 0.980 54 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.849 10.898 15.119 31.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.039 4.039 3 C -0.204 4.204 4 N -0.248 5.248 5 C -0.118 4.118 6 C -0.017 4.017 7 O -0.312 6.312 8 C 0.028 3.972 9 H 0.141 0.859 10 C 0.296 3.704 11 O -0.452 6.452 12 N -0.361 5.361 13 C 0.002 3.998 14 C -0.109 4.109 15 C -0.150 4.150 16 C 0.061 3.939 17 N -0.392 5.392 18 C -0.366 4.366 19 H 0.064 0.936 20 C -0.258 4.258 21 N -0.638 5.638 22 Si 0.788 3.212 23 H -0.203 1.203 24 H -0.224 1.224 25 H -0.169 1.169 26 C -0.186 4.186 27 C -0.200 4.200 28 C -0.099 4.099 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.078 0.922 32 H 0.044 0.956 33 H 0.070 0.930 34 H 0.089 0.911 35 H 0.093 0.907 36 H 0.136 0.864 37 H 0.044 0.956 38 H 0.098 0.902 39 H 0.134 0.866 40 H 0.255 0.745 41 H 0.080 0.920 42 H 0.057 0.943 43 H 0.088 0.912 44 H 0.124 0.876 45 H 0.034 0.966 46 H 0.037 0.963 47 H 0.203 0.797 48 H 0.066 0.934 49 H 0.140 0.860 50 H 0.109 0.891 51 H 0.100 0.900 52 H 0.134 0.866 53 H 0.038 0.962 54 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -24.423 10.023 15.473 30.600 hybrid contribution 0.400 0.047 -1.968 2.009 sum -24.023 10.070 13.504 29.341 Atomic orbital electron populations 1.21876 0.92330 1.02502 1.03184 1.21784 0.97157 0.95484 0.89458 1.21898 1.00890 0.94319 1.03285 1.62407 1.05544 1.16736 1.40102 1.22971 1.02481 0.88562 0.97756 1.22998 0.78577 1.02893 0.97214 1.88104 1.22072 1.26211 1.94784 1.21932 0.88820 0.86206 1.00246 0.85945 1.20735 0.89655 0.84199 0.75764 1.90738 1.74976 1.29548 1.49942 1.45731 1.07320 1.08845 1.74178 1.21291 0.78630 0.98942 1.00946 1.21135 0.91632 0.94524 1.03656 1.21465 0.94380 0.99496 0.99657 1.20274 0.96173 0.95173 0.82306 1.42555 1.73585 1.21425 1.01638 1.19010 1.33356 0.96695 0.87493 0.93625 1.25593 1.02340 1.02585 0.95280 1.69921 1.56640 1.37376 0.99867 0.85313 0.78684 0.79905 0.77280 1.20345 1.22438 1.16888 1.23146 1.03040 1.01650 0.90720 1.23044 1.01218 0.93218 1.02544 1.22682 0.89925 1.02056 0.95243 0.90994 0.91112 0.92178 0.95598 0.93047 0.91137 0.90693 0.86378 0.95565 0.90197 0.86635 0.74492 0.91997 0.94295 0.91158 0.87570 0.96606 0.96302 0.79718 0.93396 0.86019 0.89053 0.89978 0.86555 0.96204 0.86764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.44 8.84 71.98 0.64 -0.81 16 2 C 0.07 1.00 2.67 44.91 0.12 1.12 16 3 C -0.15 -1.82 8.97 71.98 0.65 -1.17 16 4 N -0.52 -8.52 4.60 -870.02 -4.00 -12.52 16 5 C 0.01 0.16 5.24 86.32 0.45 0.61 16 6 C 0.06 1.00 7.01 72.02 0.51 1.51 16 7 O -0.39 -10.66 10.01 -130.02 -1.30 -11.96 16 8 C 0.09 2.04 3.22 29.88 0.10 2.14 16 9 H 0.12 2.01 8.14 -2.38 -0.02 1.99 16 10 C 0.51 15.64 7.18 87.66 0.63 16.27 16 11 O -0.57 -24.71 16.52 15.93 0.26 -24.45 16 12 N -0.71 -17.24 5.51 -463.06 -2.55 -19.79 16 13 C 0.13 3.73 4.80 86.38 0.41 4.14 16 14 C -0.07 -1.66 5.37 30.59 0.16 -1.49 16 15 C -0.15 -4.06 1.83 -52.18 -0.10 -4.16 16 16 C 0.19 7.37 5.32 86.38 0.46 7.83 16 17 N -0.75 -35.51 5.29 -343.43 -1.82 -37.33 16 18 C -0.23 -14.00 10.47 84.03 0.88 -13.12 16 19 H 0.05 3.05 8.06 -2.91 -0.02 3.03 16 20 C -0.07 -4.08 5.50 84.86 0.47 -3.61 16 21 N -0.99 -65.72 13.97 21.65 0.30 -65.42 16 22 Si 0.96 46.09 27.90 68.60 1.91 48.00 16 23 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 24 H -0.30 -14.45 7.11 99.48 0.71 -13.75 16 25 H -0.24 -10.18 6.30 99.48 0.63 -9.56 16 26 C -0.15 -3.06 9.87 30.59 0.30 -2.75 16 27 C -0.16 -3.72 9.97 30.59 0.31 -3.41 16 28 C 0.03 0.60 4.56 86.31 0.39 1.00 16 29 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.06 0.57 6.29 -2.39 -0.02 0.56 16 32 H 0.03 0.47 8.14 -2.39 -0.02 0.45 16 33 H 0.05 0.71 6.36 -2.39 -0.02 0.69 16 34 H 0.07 0.77 8.14 -2.38 -0.02 0.75 16 35 H 0.07 0.81 8.14 -2.38 -0.02 0.79 16 36 H 0.12 1.25 6.11 -2.39 -0.01 1.24 16 37 H 0.03 0.52 8.14 -2.39 -0.02 0.50 16 38 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.12 1.60 8.14 -2.39 -0.02 1.58 16 40 H 0.42 6.51 8.17 -92.71 -0.76 5.75 16 41 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 42 H 0.04 1.57 6.85 -2.39 -0.02 1.56 16 43 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 44 H 0.11 1.61 7.95 -2.39 -0.02 1.59 16 45 H 0.02 0.65 8.09 -2.39 -0.02 0.63 16 46 H 0.02 0.82 6.69 -2.38 -0.02 0.80 16 47 H 0.37 16.41 5.46 -92.71 -0.51 15.90 16 48 H 0.26 16.23 8.31 -92.71 -0.77 15.46 16 49 H 0.12 1.83 8.09 -2.39 -0.02 1.81 16 50 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 51 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 52 H 0.12 2.05 8.14 -2.39 -0.02 2.03 16 53 H 0.02 0.53 8.14 -2.39 -0.02 0.51 16 54 H 0.11 1.80 5.90 -2.39 -0.01 1.79 16 Total: -1.00 -84.36 419.57 -1.27 -85.63 By element: Atomic # 1 Polarization: 34.21 SS G_CDS: -0.46 Total: 33.75 kcal Atomic # 6 Polarization: -2.29 SS G_CDS: 6.37 Total: 4.08 kcal Atomic # 7 Polarization: -126.99 SS G_CDS: -8.07 Total: -135.06 kcal Atomic # 8 Polarization: -35.37 SS G_CDS: -1.04 Total: -36.41 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 1.91 Total: 48.00 kcal Total: -84.36 -1.27 -85.63 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166814738.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.878 kcal (2) G-P(sol) polarization free energy of solvation -84.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds