Wall clock time and date at job start Sat Apr 11 2020 05:49:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53007 * 109.47161 * 2 1 4 4 H 1.08997 * 109.47133 * 308.80656 * 3 2 1 5 5 C 1.53002 * 109.47185 * 188.80807 * 3 2 1 6 6 C 1.52995 * 109.46974 * 68.80588 * 3 2 1 7 7 H 1.09001 * 109.47281 * 172.65588 * 6 3 2 8 8 N 1.46504 * 109.47230 * 52.65894 * 6 3 2 9 9 C 1.34774 * 120.00077 * 97.25325 * 8 6 3 10 10 C 1.50702 * 119.99843 * 175.00192 * 9 8 6 11 11 O 1.21281 * 120.00225 * 354.99568 * 9 8 6 12 12 C 1.50699 * 109.47297 * 292.65864 * 6 3 2 13 13 O 1.21286 * 119.99946 * 113.38930 * 12 6 3 14 14 N 1.34779 * 119.99906 * 293.39412 * 12 6 3 15 15 C 1.46502 * 119.99710 * 175.29330 * 14 12 6 16 16 C 1.52998 * 109.46790 * 179.97438 * 15 14 12 17 17 C 1.53003 * 109.47278 * 184.77515 * 16 15 14 18 18 C 1.52996 * 115.54825 * 279.47785 * 17 16 15 19 19 N 1.46497 * 109.47395 * 294.31957 * 18 17 16 20 20 C 1.36936 * 120.00030 * 183.79838 * 19 18 17 21 21 H 1.07997 * 120.00502 * 359.97438 * 20 19 18 22 22 C 1.38815 * 119.99806 * 179.97438 * 20 19 18 23 23 N 1.31614 * 120.00430 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 119.99783 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47370 * 359.97438 * 24 22 20 26 26 H 1.48495 * 109.47312 * 120.00253 * 24 22 20 27 27 H 1.48507 * 109.47040 * 239.99962 * 24 22 20 28 28 C 1.52998 * 117.49861 * 133.76914 * 17 16 15 29 29 C 1.52994 * 117.49820 * 65.14772 * 17 16 15 30 30 H 1.09004 * 109.47302 * 163.66089 * 1 2 3 31 31 H 1.09000 * 109.47331 * 283.66571 * 1 2 3 32 32 H 1.09004 * 109.47173 * 43.66709 * 1 2 3 33 33 H 1.09001 * 109.47172 * 240.00441 * 2 1 3 34 34 H 1.08990 * 109.47692 * 120.00186 * 2 1 3 35 35 H 1.09004 * 109.47085 * 305.90215 * 5 3 2 36 36 H 1.08998 * 109.47158 * 65.89928 * 5 3 2 37 37 H 1.09000 * 109.46910 * 185.90753 * 5 3 2 38 38 H 0.97008 * 119.99973 * 277.25387 * 8 6 3 39 39 H 1.08999 * 109.47581 * 59.99429 * 10 9 8 40 40 H 1.09004 * 109.46808 * 179.97438 * 10 9 8 41 41 H 1.08998 * 109.46872 * 299.99760 * 10 9 8 42 42 H 0.96994 * 119.99599 * 355.56392 * 14 12 6 43 43 H 1.08992 * 109.47309 * 299.99704 * 15 14 12 44 44 H 1.09003 * 109.47202 * 60.00180 * 15 14 12 45 45 H 1.09003 * 109.47250 * 304.77593 * 16 15 14 46 46 H 1.09002 * 109.47304 * 64.77513 * 16 15 14 47 47 H 1.09007 * 109.46998 * 54.32077 * 18 17 16 48 48 H 1.08999 * 109.47023 * 174.31545 * 18 17 16 49 49 H 0.96997 * 120.00394 * 3.79462 * 19 18 17 50 50 H 0.97001 * 120.00590 * 179.97438 * 23 22 20 51 51 H 1.08997 * 117.50262 * 0.02562 * 28 17 16 52 52 H 1.09005 * 117.49728 * 145.01967 * 28 17 16 53 53 H 1.08997 * 117.50176 * 214.98271 * 29 17 16 54 54 H 1.09002 * 117.49981 * 0.02562 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5539 1.9998 -0.8008 5 6 3.5540 1.4482 -0.2209 6 6 1.7183 2.0972 1.3449 7 1 2.1935 3.0769 1.3951 8 7 2.2224 1.2538 2.4316 9 6 3.4148 1.5257 2.9980 10 6 3.8824 0.7291 4.1887 11 8 4.1114 2.4114 2.5494 12 6 0.2259 2.2551 1.4826 13 8 -0.3758 1.6219 2.3240 14 7 -0.4401 3.0998 0.6706 15 6 -1.9017 3.1772 0.7342 16 6 -2.4026 4.2045 -0.2829 17 6 -3.9162 4.3726 -0.1349 18 6 -4.7687 3.2966 -0.8103 19 7 -4.5960 3.3772 -2.2629 20 6 -5.3241 2.5595 -3.0854 21 1 -6.0254 1.8550 -2.6633 22 6 -5.1607 2.6363 -4.4617 23 7 -4.3065 3.4952 -4.9762 24 14 -6.1534 1.5204 -5.5837 25 1 -7.0358 0.6520 -4.7636 26 1 -6.9823 2.3474 -6.4970 27 1 -5.2308 0.6741 -6.3825 28 6 -4.4693 5.7988 -0.1074 29 6 -4.4362 4.9664 1.1758 30 1 -0.3634 -0.9862 -0.2891 31 1 -0.3634 0.2428 0.9986 32 1 -0.3634 0.7434 -0.7096 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8898 35 1 4.0315 0.8052 0.5185 36 1 3.7765 1.0784 -1.2218 37 1 3.9325 2.4651 -0.1166 38 1 1.6981 0.4996 2.7434 39 1 3.9544 -0.3237 3.9161 40 1 4.8611 1.0898 4.5055 41 1 3.1703 0.8450 5.0057 42 1 0.0481 3.6536 0.0415 43 1 -2.3275 2.2005 0.5044 44 1 -2.2063 3.4799 1.7360 45 1 -1.9117 5.1613 -0.1048 46 1 -2.1722 3.8601 -1.2910 47 1 -4.4555 2.3126 -0.4612 48 1 -5.8178 3.4540 -0.5599 49 1 -3.9659 4.0097 -2.6421 50 1 -4.1920 3.5486 -5.9380 51 1 -3.7550 6.6175 -0.1953 52 1 -5.4408 5.9709 -0.5709 53 1 -5.3859 4.5907 1.5567 54 1 -3.7000 5.2377 1.9325 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168270117.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:11 Heat of formation + Delta-G solvation = -75.688317 kcal Electronic energy + Delta-G solvation = -30920.512779 eV Core-core repulsion = 26891.987091 eV Total energy + Delta-G solvation = -4028.525688 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.89820 -40.22733 -39.51931 -37.51385 -36.16133 -35.73699 -34.48792 -32.77268 -31.92505 -31.13446 -30.47293 -28.13805 -27.57087 -24.71292 -24.56951 -24.28332 -22.97521 -22.17307 -21.74801 -20.76033 -19.99770 -19.06544 -18.58279 -17.93896 -17.36481 -17.00492 -16.66927 -16.50226 -16.36943 -15.97677 -15.63090 -15.41184 -15.20237 -14.88414 -14.83224 -14.49891 -14.38593 -14.21412 -13.94366 -13.85040 -13.63792 -13.31551 -13.16508 -13.03400 -12.98197 -12.92224 -12.82378 -12.55606 -12.51456 -12.27426 -12.12130 -11.97997 -11.93579 -11.80680 -11.66990 -11.47156 -11.13650 -11.00435 -10.94631 -10.88616 -10.57205 -10.08802 -10.05711 -8.96172 -7.94376 -5.21449 1.46458 1.46733 1.47579 1.56576 1.59146 1.90882 2.46055 2.54439 2.90116 3.38978 3.52050 3.69997 3.75994 3.84555 3.84991 3.93142 3.99020 4.07048 4.08125 4.25889 4.36726 4.37863 4.45169 4.50188 4.55249 4.57324 4.65222 4.68209 4.70476 4.74362 4.84075 4.92489 4.94192 4.98181 5.04708 5.08544 5.11487 5.12163 5.20053 5.23212 5.28228 5.33640 5.33848 5.34972 5.38867 5.41451 5.47466 5.49968 6.28224 6.45044 6.52670 7.11713 7.23118 7.35579 8.12055 8.37486 9.28998 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.012764 B = 0.002654 C = 0.002360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2193.104740 B =10548.397265 C =11862.613731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.111 4.111 3 C -0.094 4.094 4 H 0.087 0.913 5 C -0.130 4.130 6 C 0.134 3.866 7 H 0.114 0.886 8 N -0.704 5.704 9 C 0.510 3.490 10 C -0.168 4.168 11 O -0.583 6.583 12 C 0.520 3.480 13 O -0.564 6.564 14 N -0.714 5.714 15 C 0.137 3.863 16 C -0.079 4.079 17 C -0.136 4.136 18 C 0.188 3.812 19 N -0.735 5.735 20 C -0.242 4.242 21 H 0.070 0.930 22 C -0.072 4.072 23 N -0.965 5.965 24 Si 0.967 3.033 25 H -0.269 1.269 26 H -0.293 1.293 27 H -0.293 1.293 28 C -0.166 4.166 29 C -0.150 4.150 30 H 0.050 0.950 31 H 0.071 0.929 32 H 0.042 0.958 33 H 0.069 0.931 34 H 0.072 0.928 35 H 0.049 0.951 36 H 0.064 0.936 37 H 0.054 0.946 38 H 0.415 0.585 39 H 0.110 0.890 40 H 0.093 0.907 41 H 0.104 0.896 42 H 0.412 0.588 43 H 0.048 0.952 44 H 0.072 0.928 45 H 0.088 0.912 46 H 0.059 0.941 47 H 0.015 0.985 48 H 0.016 0.984 49 H 0.377 0.623 50 H 0.251 0.749 51 H 0.106 0.894 52 H 0.078 0.922 53 H 0.095 0.905 54 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.814 -3.016 18.104 24.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.148 4.148 3 C -0.114 4.114 4 H 0.105 0.895 5 C -0.187 4.187 6 C 0.024 3.976 7 H 0.132 0.868 8 N -0.357 5.357 9 C 0.299 3.701 10 C -0.227 4.227 11 O -0.463 6.463 12 C 0.307 3.693 13 O -0.444 6.444 14 N -0.365 5.365 15 C 0.013 3.987 16 C -0.117 4.117 17 C -0.137 4.137 18 C 0.062 3.938 19 N -0.378 5.378 20 C -0.374 4.374 21 H 0.088 0.912 22 C -0.264 4.264 23 N -0.616 5.616 24 Si 0.797 3.203 25 H -0.194 1.194 26 H -0.220 1.220 27 H -0.220 1.220 28 C -0.203 4.203 29 C -0.187 4.187 30 H 0.069 0.931 31 H 0.090 0.910 32 H 0.061 0.939 33 H 0.088 0.912 34 H 0.091 0.909 35 H 0.068 0.932 36 H 0.083 0.917 37 H 0.073 0.927 38 H 0.252 0.748 39 H 0.128 0.872 40 H 0.112 0.888 41 H 0.123 0.877 42 H 0.248 0.752 43 H 0.066 0.934 44 H 0.090 0.910 45 H 0.107 0.893 46 H 0.077 0.923 47 H 0.033 0.967 48 H 0.034 0.966 49 H 0.209 0.791 50 H 0.060 0.940 51 H 0.125 0.875 52 H 0.096 0.904 53 H 0.114 0.886 54 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 15.719 -2.981 18.378 24.366 hybrid contribution -0.733 -0.398 -1.480 1.699 sum 14.986 -3.379 16.898 22.837 Atomic orbital electron populations 1.22304 0.96797 1.01590 1.03121 1.21516 0.94741 0.95711 1.02843 1.21590 0.97968 0.97193 0.94665 0.89476 1.21681 0.93437 1.02084 1.01544 1.20823 0.89936 0.97665 0.89151 0.86792 1.45747 1.21021 1.32682 1.36246 1.21493 0.80099 0.83761 0.84763 1.21935 1.04084 1.01740 0.94927 1.90707 1.55555 1.34756 1.65261 1.20721 0.89949 0.78411 0.80247 1.90647 1.70245 1.47251 1.36280 1.45925 1.07872 1.42569 1.40182 1.21162 0.78786 0.99090 0.99615 1.21111 0.92420 0.99361 0.98768 1.21400 0.94548 0.95577 1.02221 1.20229 0.95350 0.94947 0.83277 1.42437 1.49143 1.45236 1.00945 1.19614 1.15952 1.13132 0.88694 0.91208 1.25465 1.01388 1.01463 0.98125 1.69800 1.40411 1.40391 1.10990 0.85160 0.77960 0.78225 0.78956 1.19394 1.22029 1.22016 1.22991 1.02441 0.93391 1.01472 1.23052 1.03075 1.02321 0.90263 0.93100 0.91043 0.93859 0.91217 0.90917 0.93226 0.91745 0.92697 0.74764 0.87200 0.88822 0.87734 0.75151 0.93392 0.90983 0.89346 0.92251 0.96731 0.96638 0.79101 0.94046 0.87526 0.90381 0.88618 0.86804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.26 8.56 71.98 0.62 -3.64 16 2 C -0.11 -2.03 5.28 30.60 0.16 -1.87 16 3 C -0.09 -1.67 2.35 -10.79 -0.03 -1.69 16 4 H 0.09 1.54 7.83 -2.39 -0.02 1.52 16 5 C -0.13 -2.27 8.02 71.98 0.58 -1.70 16 6 C 0.13 2.51 2.29 44.24 0.10 2.61 16 7 H 0.11 2.24 7.27 -2.39 -0.02 2.22 16 8 N -0.70 -11.77 3.69 -446.10 -1.65 -13.42 16 9 C 0.51 8.88 6.94 87.66 0.61 9.49 16 10 C -0.17 -1.52 10.32 71.24 0.74 -0.78 16 11 O -0.58 -14.55 15.44 -3.03 -0.05 -14.60 16 12 C 0.52 11.62 4.60 87.66 0.40 12.02 16 13 O -0.56 -15.60 13.95 -3.05 -0.04 -15.64 16 14 N -0.71 -14.95 5.38 -463.06 -2.49 -17.44 16 15 C 0.14 3.41 5.62 86.38 0.49 3.89 16 16 C -0.08 -2.07 5.21 30.59 0.16 -1.91 16 17 C -0.14 -4.08 1.53 -52.18 -0.08 -4.16 16 18 C 0.19 7.49 6.09 86.38 0.53 8.02 16 19 N -0.73 -36.69 5.40 -343.46 -1.86 -38.54 16 20 C -0.24 -13.50 9.99 84.03 0.84 -12.66 16 21 H 0.07 3.81 7.83 -2.91 -0.02 3.78 16 22 C -0.07 -4.11 5.50 84.86 0.47 -3.64 16 23 N -0.97 -58.23 13.06 21.65 0.28 -57.95 16 24 Si 0.97 46.16 29.55 68.60 2.03 48.19 16 25 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 26 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 27 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 28 C -0.17 -4.54 9.90 30.59 0.30 -4.24 16 29 C -0.15 -3.53 9.43 30.59 0.29 -3.24 16 30 H 0.05 1.20 8.14 -2.38 -0.02 1.18 16 31 H 0.07 1.85 4.54 -2.39 -0.01 1.84 16 32 H 0.04 1.14 7.80 -2.38 -0.02 1.12 16 33 H 0.07 1.23 8.12 -2.39 -0.02 1.21 16 34 H 0.07 1.18 6.77 -2.39 -0.02 1.17 16 35 H 0.05 0.90 7.03 -2.39 -0.02 0.89 16 36 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.05 1.05 8.03 -2.39 -0.02 1.03 16 38 H 0.41 6.24 7.50 -92.70 -0.70 5.55 16 39 H 0.11 0.53 8.14 -2.39 -0.02 0.51 16 40 H 0.09 0.87 8.12 -2.39 -0.02 0.85 16 41 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 42 H 0.41 6.91 8.44 -92.71 -0.78 6.13 16 43 H 0.05 1.45 7.91 -2.39 -0.02 1.43 16 44 H 0.07 1.75 7.50 -2.39 -0.02 1.73 16 45 H 0.09 1.89 7.94 -2.39 -0.02 1.87 16 46 H 0.06 1.91 7.47 -2.39 -0.02 1.89 16 47 H 0.01 0.61 7.91 -2.38 -0.02 0.59 16 48 H 0.02 0.64 8.09 -2.39 -0.02 0.62 16 49 H 0.38 19.80 7.17 -92.71 -0.66 19.14 16 50 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 51 H 0.11 2.53 8.08 -2.39 -0.02 2.51 16 52 H 0.08 2.43 8.14 -2.38 -0.02 2.41 16 53 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 54 H 0.11 2.18 7.92 -2.39 -0.02 2.16 16 Total: -1.00 -70.95 425.88 1.16 -69.80 By element: Atomic # 1 Polarization: 44.35 SS G_CDS: -1.24 Total: 43.11 kcal Atomic # 6 Polarization: -9.67 SS G_CDS: 6.17 Total: -3.50 kcal Atomic # 7 Polarization: -121.65 SS G_CDS: -5.71 Total: -127.35 kcal Atomic # 8 Polarization: -30.15 SS G_CDS: -0.09 Total: -30.24 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 2.03 Total: 48.19 kcal Total: -70.95 1.16 -69.80 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168270117.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.892 kcal (2) G-P(sol) polarization free energy of solvation -70.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds