Wall clock time and date at job start Sat Apr 11 2020 05:49:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47079 * 2 1 4 4 N 1.46502 * 109.47122 * 179.97438 * 3 2 1 5 5 C 1.46772 * 124.34559 * 90.00043 * 4 3 2 6 6 C 1.54477 * 105.47145 * 196.99692 * 5 4 3 7 7 H 1.09002 * 110.97256 * 92.74496 * 6 5 4 8 8 C 1.50709 * 110.96926 * 216.46552 * 6 5 4 9 9 O 1.21282 * 119.99469 * 0.02562 * 8 6 5 10 10 N 1.34772 * 119.99917 * 179.97438 * 8 6 5 11 11 C 1.46500 * 119.99660 * 180.02562 * 10 8 6 12 12 H 1.09002 * 109.47353 * 324.99874 * 11 10 8 13 13 C 1.52993 * 109.47503 * 85.00420 * 11 10 8 14 14 C 1.53009 * 109.47055 * 205.00405 * 11 10 8 15 15 C 1.52996 * 109.46924 * 64.99640 * 14 11 10 16 16 C 1.53009 * 109.46924 * 179.97438 * 15 14 11 17 17 C 1.52996 * 109.46924 * 180.02562 * 16 15 14 18 18 N 1.46504 * 109.46681 * 179.97438 * 17 16 15 19 19 C 1.36943 * 119.99781 * 180.02562 * 18 17 16 20 20 H 1.08002 * 119.99788 * 359.97438 * 19 18 17 21 21 C 1.38811 * 119.99622 * 180.27904 * 19 18 17 22 22 N 1.31614 * 120.00467 * 359.72375 * 21 19 18 23 23 Si 1.86801 * 119.99700 * 179.72266 * 21 19 18 24 24 H 1.48504 * 109.47306 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.47021 * 119.99661 * 23 21 19 26 26 H 1.48501 * 109.47039 * 240.00078 * 23 21 19 27 27 C 1.54627 * 101.76661 * 334.58723 * 6 5 4 28 28 C 1.34421 * 124.35485 * 269.98204 * 4 3 2 29 29 O 1.21272 * 124.93696 * 359.60921 * 28 4 3 30 30 H 1.08997 * 109.46959 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47081 * 300.00013 * 1 2 3 32 32 H 1.09008 * 109.47033 * 60.00085 * 1 2 3 33 33 H 1.08998 * 109.47584 * 240.00024 * 2 1 3 34 34 H 1.09000 * 109.47348 * 119.99934 * 2 1 3 35 35 H 1.09000 * 109.47175 * 60.00045 * 3 2 1 36 36 H 1.08995 * 109.47402 * 299.99981 * 3 2 1 37 37 H 1.08998 * 110.24171 * 77.99789 * 5 4 3 38 38 H 1.08993 * 110.32003 * 316.03655 * 5 4 3 39 39 H 0.96997 * 120.00214 * 0.02562 * 10 8 6 40 40 H 1.08998 * 109.47649 * 180.02562 * 13 11 10 41 41 H 1.09007 * 109.46982 * 300.00226 * 13 11 10 42 42 H 1.09002 * 109.47262 * 59.99398 * 13 11 10 43 43 H 1.09000 * 109.46573 * 305.00346 * 14 11 10 44 44 H 1.08997 * 109.47029 * 184.99973 * 14 11 10 45 45 H 1.09006 * 109.47179 * 60.00557 * 15 14 11 46 46 H 1.08997 * 109.47540 * 300.00020 * 15 14 11 47 47 H 1.08998 * 109.46895 * 60.00008 * 16 15 14 48 48 H 1.08997 * 109.47029 * 300.00333 * 16 15 14 49 49 H 1.09006 * 109.47179 * 60.00557 * 17 16 15 50 50 H 1.08997 * 109.47540 * 300.00020 * 17 16 15 51 51 H 0.97000 * 120.00410 * 0.02562 * 18 17 16 52 52 H 0.96995 * 120.00147 * 180.02562 * 22 21 19 53 53 H 1.09000 * 110.48957 * 143.48249 * 27 6 5 54 54 H 1.09008 * 110.48167 * 266.11736 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.3336 1.4424 -1.2109 6 6 5.7414 1.0072 -0.7472 7 1 5.8679 -0.0711 -0.8435 8 6 6.8122 1.7433 -1.5107 9 8 6.5038 2.5532 -2.3591 10 7 8.1122 1.5022 -1.2499 11 6 9.1531 2.2182 -1.9917 12 1 8.8216 2.3811 -3.0172 13 6 9.4204 3.5674 -1.3218 14 6 10.4383 1.3879 -1.9971 15 6 10.2048 0.0919 -2.7759 16 6 11.4902 -0.7382 -2.7819 17 6 11.2569 -2.0339 -3.5612 18 7 12.4878 -2.8283 -3.5674 19 6 12.5192 -4.0373 -4.2098 20 1 11.6364 -4.4053 -4.7114 21 6 13.6838 -4.7927 -4.2106 22 7 14.7595 -4.3445 -3.5988 23 14 13.7244 -6.4454 -5.0803 24 1 12.3962 -6.7191 -5.6854 25 1 14.7584 -6.4188 -6.1458 26 1 14.0507 -7.5125 -4.1003 27 6 5.7295 1.4332 0.7392 28 6 4.2631 1.4430 1.1107 29 8 3.8338 1.4503 2.2448 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8901 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 1.6766 1.9564 0.8900 36 1 1.6767 1.9564 -0.8899 37 1 4.3709 2.4426 -1.6423 38 1 3.9400 0.7327 -1.9385 39 1 8.3588 0.8547 -0.5711 40 1 10.1945 4.1003 -1.8739 41 1 8.5048 4.1589 -1.3179 42 1 9.7519 3.4045 -0.2962 43 1 10.7211 1.1496 -0.9717 44 1 11.2371 1.9579 -2.4713 45 1 9.9219 0.3301 -3.8013 46 1 9.4059 -0.4782 -2.3017 47 1 11.7735 -0.9764 -1.7567 48 1 12.2887 -0.1679 -3.2563 49 1 10.9738 -1.7953 -4.5865 50 1 10.4582 -2.6044 -3.0872 51 1 13.2806 -2.4980 -3.1165 52 1 15.5733 -4.8721 -3.5997 53 1 6.2724 0.7100 1.3478 54 1 6.1589 2.4286 0.8542 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001175501185.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:14 Heat of formation + Delta-G solvation = -113.793001 kcal Electronic energy + Delta-G solvation = -29120.518084 eV Core-core repulsion = 25090.340053 eV Total energy + Delta-G solvation = -4030.178031 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.92208 -40.49714 -38.13673 -37.46898 -36.78061 -35.76063 -34.75405 -33.19308 -32.40978 -31.32618 -28.82777 -28.72003 -27.32764 -25.93522 -24.65407 -23.50388 -22.74315 -22.01368 -21.70883 -21.22209 -20.46635 -19.11454 -18.55633 -17.99337 -17.29752 -16.97692 -16.67689 -16.32843 -16.20288 -15.92702 -15.55645 -15.39616 -15.27136 -14.84582 -14.80014 -14.67900 -14.61013 -14.30370 -14.10653 -13.85624 -13.73470 -13.20143 -13.10361 -13.00245 -12.89241 -12.85578 -12.81843 -12.49946 -12.45420 -12.39557 -12.23596 -12.19486 -12.10036 -11.86835 -11.76959 -11.68459 -11.45280 -11.35413 -11.15131 -10.93901 -10.73538 -10.03668 -9.77537 -9.00164 -7.96223 -5.25119 1.44594 1.47319 1.48120 1.58348 1.58881 1.87306 2.24601 2.55672 3.17650 3.32912 3.37487 3.63186 3.76906 3.86509 3.98468 4.02352 4.08465 4.10059 4.15266 4.21820 4.31898 4.40098 4.46417 4.47514 4.53627 4.59985 4.64171 4.66951 4.68892 4.76950 4.83034 4.85259 4.91672 4.94151 4.98158 5.03363 5.06853 5.13412 5.16426 5.17110 5.30875 5.31355 5.37043 5.47892 5.48526 5.53371 5.57020 5.63538 6.02843 6.27065 6.58114 7.04732 7.25792 7.32721 8.10255 8.32749 9.27567 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.011396 B = 0.001804 C = 0.001630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2456.322890 B =15516.686090 C =17174.615583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.136 4.136 3 C 0.120 3.880 4 N -0.616 5.616 5 C 0.116 3.884 6 C -0.115 4.115 7 H 0.144 0.856 8 C 0.530 3.470 9 O -0.573 6.573 10 N -0.708 5.708 11 C 0.145 3.855 12 H 0.071 0.929 13 C -0.158 4.158 14 C -0.118 4.118 15 C -0.104 4.104 16 C -0.114 4.114 17 C 0.147 3.853 18 N -0.750 5.750 19 C -0.248 4.248 20 H 0.074 0.926 21 C -0.077 4.077 22 N -0.969 5.969 23 Si 0.974 3.026 24 H -0.266 1.266 25 H -0.292 1.292 26 H -0.292 1.292 27 C -0.135 4.135 28 C 0.510 3.490 29 O -0.577 6.577 30 H 0.061 0.939 31 H 0.053 0.947 32 H 0.068 0.932 33 H 0.073 0.927 34 H 0.045 0.955 35 H 0.069 0.931 36 H 0.101 0.899 37 H 0.082 0.918 38 H 0.102 0.898 39 H 0.415 0.585 40 H 0.072 0.928 41 H 0.044 0.956 42 H 0.069 0.931 43 H 0.083 0.917 44 H 0.082 0.918 45 H 0.056 0.944 46 H 0.070 0.930 47 H 0.062 0.938 48 H 0.054 0.946 49 H 0.013 0.987 50 H 0.020 0.980 51 H 0.374 0.626 52 H 0.252 0.748 53 H 0.132 0.868 54 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.507 16.477 8.004 30.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.174 4.174 3 C -0.001 4.001 4 N -0.348 5.348 5 C -0.006 4.006 6 C -0.136 4.136 7 H 0.162 0.838 8 C 0.316 3.684 9 O -0.452 6.452 10 N -0.360 5.360 11 C 0.041 3.959 12 H 0.089 0.911 13 C -0.217 4.217 14 C -0.156 4.156 15 C -0.142 4.142 16 C -0.151 4.151 17 C 0.021 3.979 18 N -0.392 5.392 19 C -0.380 4.380 20 H 0.092 0.908 21 C -0.269 4.269 22 N -0.620 5.620 23 Si 0.803 3.197 24 H -0.191 1.191 25 H -0.220 1.220 26 H -0.219 1.219 27 C -0.175 4.175 28 C 0.299 3.701 29 O -0.457 6.457 30 H 0.080 0.920 31 H 0.072 0.928 32 H 0.087 0.913 33 H 0.092 0.908 34 H 0.064 0.936 35 H 0.087 0.913 36 H 0.119 0.881 37 H 0.100 0.900 38 H 0.120 0.880 39 H 0.252 0.748 40 H 0.091 0.909 41 H 0.064 0.936 42 H 0.088 0.912 43 H 0.102 0.898 44 H 0.101 0.899 45 H 0.074 0.926 46 H 0.089 0.911 47 H 0.081 0.919 48 H 0.073 0.927 49 H 0.031 0.969 50 H 0.038 0.962 51 H 0.205 0.795 52 H 0.060 0.940 53 H 0.150 0.850 54 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -25.117 16.938 7.856 31.296 hybrid contribution 0.744 -1.117 -0.037 1.342 sum -24.373 15.821 7.819 30.091 Atomic orbital electron populations 1.21682 0.93880 1.02528 1.02456 1.21848 0.97240 0.96280 1.02061 1.21599 0.77073 0.97780 1.03678 1.48485 1.06963 1.72123 1.07225 1.22042 0.88052 1.03856 0.86687 1.22228 0.93368 1.03601 0.94429 0.83840 1.20289 0.83903 0.81818 0.82428 1.90717 1.82650 1.36688 1.35190 1.46028 1.04900 1.43944 1.41120 1.20946 0.87160 0.91776 0.96049 0.91065 1.22122 1.01689 0.96107 1.01752 1.21847 0.96349 0.95344 1.02026 1.21427 0.96430 0.95727 1.00636 1.21613 0.98745 0.94812 0.99978 1.20878 0.88295 0.91726 0.96979 1.42653 1.11128 1.20536 1.64909 1.19707 0.96821 0.95932 1.25556 0.90759 1.25598 0.95836 1.02823 1.02676 1.69816 1.02284 1.40042 1.49867 0.85059 0.77653 0.79450 0.77512 1.19056 1.21952 1.21861 1.22320 0.93675 1.06249 0.95228 1.21287 0.90354 0.74448 0.84061 1.90712 1.79489 1.52661 1.22858 0.92005 0.92789 0.91276 0.90836 0.93581 0.91288 0.88114 0.90007 0.88006 0.74787 0.90893 0.93648 0.91202 0.89819 0.89903 0.92553 0.91097 0.91937 0.92688 0.96903 0.96226 0.79468 0.93950 0.85020 0.87017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.91 71.98 0.71 -0.59 16 2 C -0.14 -1.55 6.26 30.59 0.19 -1.36 16 3 C 0.12 1.49 5.94 86.38 0.51 2.00 16 4 N -0.62 -8.86 2.93 -818.00 -2.40 -11.26 16 5 C 0.12 1.32 6.71 86.83 0.58 1.90 16 6 C -0.11 -1.09 3.54 -10.48 -0.04 -1.13 16 7 H 0.14 0.76 8.14 -2.39 -0.02 0.74 16 8 C 0.53 7.64 7.02 87.66 0.62 8.25 16 9 O -0.57 -12.86 15.17 -3.03 -0.05 -12.90 16 10 N -0.71 -8.19 4.53 -442.52 -2.00 -10.20 16 11 C 0.15 2.07 2.57 44.99 0.12 2.19 16 12 H 0.07 1.34 7.58 -2.39 -0.02 1.32 16 13 C -0.16 -2.08 9.48 71.98 0.68 -1.39 16 14 C -0.12 -1.70 4.75 30.60 0.15 -1.56 16 15 C -0.10 -2.07 5.10 30.60 0.16 -1.91 16 16 C -0.11 -3.24 5.33 30.60 0.16 -3.08 16 17 C 0.15 5.73 6.26 86.38 0.54 6.27 16 18 N -0.75 -38.34 5.60 -343.44 -1.92 -40.27 16 19 C -0.25 -14.01 9.99 84.03 0.84 -13.17 16 20 H 0.07 4.03 7.83 -2.91 -0.02 4.01 16 21 C -0.08 -4.45 5.50 84.86 0.47 -3.99 16 22 N -0.97 -59.35 13.06 21.65 0.28 -59.07 16 23 Si 0.97 46.03 29.55 68.60 2.03 48.06 16 24 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 25 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 26 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 27 C -0.13 -1.43 6.41 30.58 0.20 -1.23 16 28 C 0.51 9.37 8.02 87.90 0.71 10.08 16 29 O -0.58 -15.74 17.59 -3.01 -0.05 -15.79 16 30 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.07 0.45 8.14 -2.38 -0.02 0.43 16 33 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.07 1.06 7.92 -2.39 -0.02 1.04 16 36 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.08 1.18 6.96 -2.39 -0.02 1.16 16 38 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.42 2.86 8.60 -92.71 -0.80 2.06 16 40 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 41 H 0.04 0.73 8.14 -2.38 -0.02 0.71 16 42 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 43 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 44 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 45 H 0.06 1.21 8.14 -2.38 -0.02 1.19 16 46 H 0.07 1.28 7.75 -2.39 -0.02 1.26 16 47 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 48 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 49 H 0.01 0.51 8.14 -2.38 -0.02 0.50 16 50 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 51 H 0.37 20.18 7.67 -92.71 -0.71 19.46 16 52 H 0.25 14.85 8.31 -92.71 -0.77 14.08 16 53 H 0.13 0.91 8.14 -2.39 -0.02 0.89 16 54 H 0.11 1.16 7.89 -2.38 -0.02 1.14 16 Total: -1.00 -77.15 437.77 1.83 -75.32 By element: Atomic # 1 Polarization: 25.47 SS G_CDS: -0.64 Total: 24.83 kcal Atomic # 6 Polarization: -5.31 SS G_CDS: 6.59 Total: 1.28 kcal Atomic # 7 Polarization: -114.75 SS G_CDS: -6.04 Total: -120.79 kcal Atomic # 8 Polarization: -28.59 SS G_CDS: -0.10 Total: -28.69 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 2.03 Total: 48.06 kcal Total: -77.15 1.83 -75.32 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175501185.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.476 kcal (2) G-P(sol) polarization free energy of solvation -77.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds