Wall clock time and date at job start Sat Apr 11 2020 05:49:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47340 * 2 1 4 4 H 1.09000 * 109.46622 * 54.99756 * 3 2 1 5 5 C 1.50699 * 109.47257 * 175.00254 * 3 2 1 6 6 O 1.21279 * 120.00039 * 120.00346 * 5 3 2 7 7 N 1.34773 * 119.99928 * 300.00277 * 5 3 2 8 8 C 1.46500 * 119.99910 * 180.02562 * 7 5 3 9 9 H 1.08993 * 109.47452 * 324.99846 * 8 7 5 10 10 C 1.53006 * 109.46998 * 84.99768 * 8 7 5 11 11 C 1.52997 * 109.47007 * 204.99627 * 8 7 5 12 12 C 1.53001 * 109.47328 * 65.00131 * 11 8 7 13 13 C 1.52997 * 109.47328 * 179.97438 * 12 11 8 14 14 C 1.53000 * 109.46822 * 179.97438 * 13 12 11 15 15 N 1.46507 * 109.46942 * 180.02562 * 14 13 12 16 16 C 1.36928 * 120.00092 * 180.02562 * 15 14 13 17 17 H 1.08007 * 120.00077 * 359.97438 * 16 15 14 18 18 C 1.38814 * 120.00139 * 179.97438 * 16 15 14 19 19 N 1.31623 * 119.99780 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 120.00173 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47644 * 59.99562 * 20 18 16 22 22 H 1.48499 * 109.47203 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.46958 * 299.99683 * 20 18 16 24 24 N 1.46497 * 109.46958 * 295.00540 * 3 2 1 25 25 C 1.46762 * 124.35268 * 119.72530 * 24 3 2 26 26 C 1.54654 * 105.38630 * 162.85125 * 25 24 3 27 27 C 1.54627 * 101.68304 * 25.76509 * 26 25 24 28 28 C 1.34423 * 124.34994 * 300.01928 * 24 3 2 29 29 O 1.21278 * 124.93959 * 0.39352 * 28 24 3 30 30 H 1.08999 * 109.47198 * 180.02562 * 1 2 3 31 31 H 1.09009 * 109.46774 * 299.99582 * 1 2 3 32 32 H 1.08996 * 109.47788 * 59.99667 * 1 2 3 33 33 H 1.09003 * 109.46844 * 239.99969 * 2 1 3 34 34 H 1.09001 * 109.47128 * 120.00103 * 2 1 3 35 35 H 0.97003 * 120.00095 * 359.97438 * 7 5 3 36 36 H 1.09001 * 109.46801 * 60.00058 * 10 8 7 37 37 H 1.09001 * 109.46998 * 179.97438 * 10 8 7 38 38 H 1.09000 * 109.47050 * 299.99945 * 10 8 7 39 39 H 1.09002 * 109.47196 * 184.99891 * 11 8 7 40 40 H 1.09001 * 109.47630 * 304.99986 * 11 8 7 41 41 H 1.09002 * 109.46786 * 300.00010 * 12 11 8 42 42 H 1.09001 * 109.46883 * 59.99398 * 12 11 8 43 43 H 1.09002 * 109.47196 * 299.99760 * 13 12 11 44 44 H 1.08998 * 109.46963 * 60.00165 * 13 12 11 45 45 H 1.08992 * 109.47381 * 299.99402 * 14 13 12 46 46 H 1.08998 * 109.47082 * 60.00403 * 14 13 12 47 47 H 0.97002 * 119.99509 * 359.97438 * 15 14 13 48 48 H 0.97001 * 119.99365 * 180.02562 * 19 18 16 49 49 H 1.09001 * 110.24559 * 281.97993 * 25 24 3 50 50 H 1.09005 * 110.24469 * 43.97810 * 25 24 3 51 51 H 1.08997 * 111.19440 * 267.59649 * 26 25 24 52 52 H 1.08996 * 110.82447 * 143.77463 * 26 25 24 53 53 H 1.08996 * 110.48707 * 216.30811 * 27 26 25 54 54 H 1.09011 * 110.48584 * 93.66795 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4443 0.1238 6 8 4.2216 1.9436 -0.7478 7 7 4.1298 0.8911 1.2030 8 6 5.5898 0.8933 1.3236 9 1 6.0361 0.7748 0.3363 10 6 6.0490 2.2185 1.9352 11 6 6.0289 -0.2632 2.2239 12 6 5.6803 -1.5931 1.5524 13 6 6.1200 -2.7496 2.4524 14 6 5.7708 -4.0793 1.7811 15 7 6.1912 -5.1868 2.6432 16 6 5.9808 -6.4806 2.2474 17 1 5.5044 -6.6847 1.2997 18 6 6.3797 -7.5299 3.0639 19 7 6.9606 -7.2811 4.2185 20 14 6.0932 -9.2949 2.5236 21 1 6.8073 -9.5435 1.2455 22 1 6.6064 -10.2209 3.5650 23 1 4.6387 -9.5236 2.3305 24 7 1.6524 2.0975 -1.2517 25 6 0.8028 3.2915 -1.3331 26 6 1.0293 3.8602 -2.7533 27 6 1.4528 2.5943 -3.5337 28 6 2.0244 1.6788 -2.4737 29 8 2.7178 0.7086 -2.6942 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5138 -0.8899 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 3.5861 0.4920 1.9003 36 1 5.6027 2.3369 2.9226 37 1 7.1353 2.2200 2.0253 38 1 5.7361 3.0424 1.2938 39 1 7.1055 -0.2092 2.3857 40 1 5.5136 -0.1939 3.1819 41 1 4.6037 -1.6471 1.3906 42 1 6.1956 -1.6624 0.5944 43 1 7.1966 -2.6953 2.6138 44 1 5.6050 -2.6803 3.4106 45 1 4.6941 -4.1334 1.6202 46 1 6.2855 -4.1488 0.8229 47 1 6.6194 -5.0034 3.4941 48 1 7.2397 -8.0144 4.7889 49 1 -0.2437 3.0199 -1.1951 50 1 1.1058 4.0218 -0.5828 51 1 1.8250 4.6051 -2.7572 52 1 0.1058 4.2760 -3.1561 53 1 2.2124 2.8399 -4.2758 54 1 0.5878 2.1327 -4.0103 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001176668215.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:25 Heat of formation + Delta-G solvation = -106.549143 kcal Electronic energy + Delta-G solvation = -30331.234781 eV Core-core repulsion = 26301.370867 eV Total energy + Delta-G solvation = -4029.863914 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.88994 -40.38673 -38.07384 -37.40184 -36.82695 -35.91414 -34.77186 -32.95494 -31.92487 -31.64452 -28.85379 -28.44319 -28.05939 -25.95122 -23.91595 -23.31377 -22.72361 -22.51316 -22.05653 -21.55896 -20.04423 -19.15035 -18.32321 -17.97811 -17.47371 -17.07273 -16.70970 -16.30869 -15.97770 -15.86678 -15.44298 -15.37390 -15.27361 -14.96784 -14.69280 -14.57858 -14.34878 -14.21513 -14.14940 -13.87998 -13.59863 -13.31497 -13.26681 -13.05051 -12.95772 -12.89757 -12.85933 -12.49234 -12.41219 -12.30406 -12.21852 -12.15272 -11.99630 -11.90889 -11.84096 -11.82827 -11.53526 -11.42891 -10.95891 -10.95507 -10.64991 -10.07604 -9.65536 -9.04368 -7.98508 -5.28109 1.44557 1.48371 1.54705 1.54810 1.62322 1.95107 2.36449 2.53531 3.34104 3.43024 3.55783 3.64427 3.74723 3.83925 3.95053 4.00438 4.01877 4.08756 4.11109 4.20429 4.32034 4.34777 4.38931 4.48002 4.57305 4.61369 4.66919 4.68830 4.74859 4.78147 4.84126 4.87826 4.88972 4.95793 4.98270 5.03776 5.08651 5.09176 5.15056 5.22829 5.23625 5.28970 5.33058 5.41232 5.42825 5.49180 5.55632 5.61013 6.18691 6.24196 6.54681 7.20751 7.29849 7.31945 8.05457 8.30358 9.24742 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.014005 B = 0.002124 C = 0.001952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1998.865206 B =13181.342793 C =14343.697854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.135 4.135 3 C 0.144 3.856 4 H 0.154 0.846 5 C 0.497 3.503 6 O -0.571 6.571 7 N -0.710 5.710 8 C 0.145 3.855 9 H 0.053 0.947 10 C -0.152 4.152 11 C -0.114 4.114 12 C -0.105 4.105 13 C -0.110 4.110 14 C 0.148 3.852 15 N -0.748 5.748 16 C -0.253 4.253 17 H 0.071 0.929 18 C -0.076 4.076 19 N -0.968 5.968 20 Si 0.977 3.023 21 H -0.279 1.279 22 H -0.290 1.290 23 H -0.276 1.276 24 N -0.606 5.606 25 C 0.098 3.902 26 C -0.120 4.120 27 C -0.154 4.154 28 C 0.506 3.494 29 O -0.579 6.579 30 H 0.055 0.945 31 H 0.083 0.917 32 H 0.052 0.948 33 H 0.042 0.958 34 H 0.091 0.909 35 H 0.413 0.587 36 H 0.076 0.924 37 H 0.073 0.927 38 H 0.040 0.960 39 H 0.085 0.915 40 H 0.091 0.909 41 H 0.063 0.937 42 H 0.045 0.955 43 H 0.057 0.943 44 H 0.068 0.932 45 H 0.017 0.983 46 H 0.007 0.993 47 H 0.375 0.625 48 H 0.253 0.747 49 H 0.101 0.899 50 H 0.092 0.908 51 H 0.078 0.922 52 H 0.123 0.877 53 H 0.092 0.908 54 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.882 31.192 -6.970 36.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.173 4.173 3 C 0.037 3.963 4 H 0.171 0.829 5 C 0.283 3.717 6 O -0.449 6.449 7 N -0.364 5.364 8 C 0.040 3.960 9 H 0.071 0.929 10 C -0.210 4.210 11 C -0.152 4.152 12 C -0.143 4.143 13 C -0.148 4.148 14 C 0.022 3.978 15 N -0.390 5.390 16 C -0.385 4.385 17 H 0.089 0.911 18 C -0.268 4.268 19 N -0.618 5.618 20 Si 0.805 3.195 21 H -0.206 1.206 22 H -0.216 1.216 23 H -0.202 1.202 24 N -0.339 5.339 25 C -0.023 4.023 26 C -0.157 4.157 27 C -0.194 4.194 28 C 0.295 3.705 29 O -0.458 6.458 30 H 0.074 0.926 31 H 0.102 0.898 32 H 0.071 0.929 33 H 0.061 0.939 34 H 0.109 0.891 35 H 0.250 0.750 36 H 0.095 0.905 37 H 0.092 0.908 38 H 0.060 0.940 39 H 0.104 0.896 40 H 0.109 0.891 41 H 0.082 0.918 42 H 0.064 0.936 43 H 0.076 0.924 44 H 0.087 0.913 45 H 0.035 0.965 46 H 0.025 0.975 47 H 0.207 0.793 48 H 0.062 0.938 49 H 0.119 0.881 50 H 0.110 0.890 51 H 0.096 0.904 52 H 0.141 0.859 53 H 0.110 0.890 54 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -17.078 30.904 -7.755 36.151 hybrid contribution 0.481 -1.576 0.119 1.652 sum -16.597 29.328 -7.636 34.553 Atomic orbital electron populations 1.21665 0.92650 1.02390 1.02872 1.21869 0.98723 0.93726 1.03011 1.21045 0.89985 0.96394 0.88912 0.82855 1.21430 0.91740 0.77336 0.81218 1.90690 1.66278 1.46784 1.41118 1.45986 1.07731 1.59716 1.22948 1.20908 0.80031 0.95966 0.99092 0.92876 1.22072 1.02204 0.95584 1.01168 1.21835 1.03041 0.91487 0.98840 1.21412 1.01224 0.93715 0.97954 1.21581 1.01150 0.92831 0.99207 1.20839 0.96249 0.87745 0.93002 1.42597 1.72608 1.01759 1.22074 1.19602 1.31945 0.84658 1.02282 0.91141 1.25627 1.01841 1.02239 0.97115 1.69810 1.47556 1.31855 1.12602 0.85167 0.77995 0.79368 0.76963 1.20564 1.21622 1.20203 1.48120 1.50754 1.30545 1.04498 1.22493 0.95226 0.85372 0.99199 1.22649 1.04370 0.95503 0.93186 1.22371 1.03239 0.96639 0.97130 1.21599 0.78365 0.84600 0.85889 1.90692 1.39607 1.30856 1.84659 0.92628 0.89834 0.92899 0.93905 0.89105 0.74964 0.90492 0.90824 0.94047 0.89627 0.89070 0.91789 0.93634 0.92380 0.91326 0.96509 0.97463 0.79291 0.93808 0.88132 0.88983 0.90372 0.85875 0.88967 0.86238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 9.80 71.98 0.71 -0.94 16 2 C -0.13 -2.31 5.30 30.59 0.16 -2.15 16 3 C 0.14 2.30 2.67 44.25 0.12 2.42 16 4 H 0.15 1.11 8.07 -2.39 -0.02 1.09 16 5 C 0.50 11.67 6.82 87.66 0.60 12.27 16 6 O -0.57 -19.11 14.56 10.95 0.16 -18.95 16 7 N -0.71 -13.14 4.39 -442.54 -1.94 -15.08 16 8 C 0.14 2.98 2.57 44.99 0.12 3.09 16 9 H 0.05 1.49 7.58 -2.39 -0.02 1.47 16 10 C -0.15 -2.58 9.48 71.98 0.68 -1.90 16 11 C -0.11 -2.19 4.75 30.59 0.15 -2.04 16 12 C -0.10 -2.73 5.10 30.59 0.16 -2.57 16 13 C -0.11 -3.56 5.33 30.59 0.16 -3.40 16 14 C 0.15 6.39 6.26 86.38 0.54 6.93 16 15 N -0.75 -40.40 5.60 -343.45 -1.92 -42.32 16 16 C -0.25 -14.95 9.99 84.04 0.84 -14.11 16 17 H 0.07 4.04 7.83 -2.91 -0.02 4.02 16 18 C -0.08 -4.52 5.50 84.86 0.47 -4.05 16 19 N -0.97 -60.59 13.06 21.65 0.28 -60.31 16 20 Si 0.98 47.51 29.55 68.60 2.03 49.54 16 21 H -0.28 -13.19 7.11 99.48 0.71 -12.49 16 22 H -0.29 -13.98 7.11 99.48 0.71 -13.28 16 23 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 24 N -0.61 -10.17 2.08 -797.86 -1.66 -11.83 16 25 C 0.10 0.66 7.31 86.89 0.64 1.30 16 26 C -0.12 -0.74 7.19 31.71 0.23 -0.51 16 27 C -0.15 -2.14 6.86 30.59 0.21 -1.93 16 28 C 0.51 12.31 6.68 87.90 0.59 12.90 16 29 O -0.58 -21.03 15.35 10.96 0.17 -20.86 16 30 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.08 0.55 8.14 -2.38 -0.02 0.53 16 32 H 0.05 0.65 7.75 -2.39 -0.02 0.63 16 33 H 0.04 1.14 6.62 -2.39 -0.02 1.13 16 34 H 0.09 1.31 7.43 -2.39 -0.02 1.29 16 35 H 0.41 5.17 7.96 -92.71 -0.74 4.43 16 36 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 40 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 41 H 0.06 1.61 7.75 -2.39 -0.02 1.59 16 42 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 43 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 44 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 45 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 46 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 47 H 0.38 21.08 7.67 -92.71 -0.71 20.37 16 48 H 0.25 15.26 8.31 -92.71 -0.77 14.49 16 49 H 0.10 0.19 8.14 -2.39 -0.02 0.17 16 50 H 0.09 0.38 8.14 -2.38 -0.02 0.36 16 51 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 52 H 0.12 -0.02 8.14 -2.39 -0.02 -0.03 16 53 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 54 H 0.12 1.19 8.14 -2.38 -0.02 1.17 16 Total: -1.00 -87.74 431.05 2.89 -84.85 By element: Atomic # 1 Polarization: 30.24 SS G_CDS: -0.58 Total: 29.66 kcal Atomic # 6 Polarization: -1.05 SS G_CDS: 6.35 Total: 5.31 kcal Atomic # 7 Polarization: -124.30 SS G_CDS: -5.24 Total: -129.54 kcal Atomic # 8 Polarization: -40.14 SS G_CDS: 0.33 Total: -39.81 kcal Atomic # 14 Polarization: 47.51 SS G_CDS: 2.03 Total: 49.54 kcal Total: -87.74 2.89 -84.85 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176668215.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.701 kcal (2) G-P(sol) polarization free energy of solvation -87.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds