Wall clock time and date at job start Sat Apr 11 2020 05:50:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52999 * 109.46984 * 2 1 4 4 H 1.09000 * 109.47486 * 55.00077 * 3 2 1 5 5 C 1.52997 * 109.47269 * 294.99741 * 3 2 1 6 6 C 1.50706 * 109.46573 * 175.00011 * 3 2 1 7 7 O 1.21274 * 120.00042 * 359.72068 * 6 3 2 8 8 N 1.34777 * 119.99766 * 179.97438 * 6 3 2 9 9 C 1.46496 * 120.00266 * 179.97438 * 8 6 3 10 10 C 1.50699 * 109.47317 * 180.02562 * 9 8 6 11 11 O 1.21282 * 120.00041 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99614 * 180.02562 * 10 9 8 13 13 C 1.48144 * 127.84310 * 359.67830 * 12 10 9 14 14 C 1.54787 * 104.41897 * 140.37039 * 13 12 10 15 15 H 1.08996 * 110.19993 * 142.94161 * 14 13 12 16 16 C 1.52998 * 110.61301 * 265.17736 * 14 13 12 17 17 C 1.54285 * 104.92253 * 24.16653 * 14 13 12 18 18 C 1.52994 * 110.34240 * 240.93824 * 17 14 13 19 19 C 1.53001 * 110.34477 * 118.67806 * 17 14 13 20 20 N 1.46493 * 109.47094 * 183.00987 * 19 17 14 21 21 C 1.36938 * 120.00003 * 179.97438 * 20 19 17 22 22 H 1.07996 * 120.00075 * 0.02562 * 21 20 19 23 23 C 1.38817 * 120.00132 * 180.02562 * 21 20 19 24 24 N 1.31620 * 119.99958 * 180.02562 * 23 21 20 25 25 Si 1.86795 * 119.99950 * 0.02562 * 23 21 20 26 26 H 1.48503 * 109.47170 * 89.99965 * 25 23 21 27 27 H 1.48502 * 109.47186 * 210.00009 * 25 23 21 28 28 H 1.48506 * 109.47234 * 329.99836 * 25 23 21 29 29 C 1.48150 * 127.83275 * 180.02562 * 12 10 9 30 30 H 1.08999 * 109.47112 * 300.00392 * 1 2 3 31 31 H 1.09001 * 109.46642 * 60.00139 * 1 2 3 32 32 H 1.08998 * 109.46901 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.46604 * 239.99625 * 2 1 3 34 34 H 1.09001 * 109.46642 * 119.99861 * 2 1 3 35 35 H 1.09000 * 109.47140 * 300.00547 * 5 3 2 36 36 H 1.09001 * 109.47230 * 59.99691 * 5 3 2 37 37 H 1.09001 * 109.47375 * 180.02562 * 5 3 2 38 38 H 0.96999 * 120.00043 * 0.02562 * 8 6 3 39 39 H 1.09004 * 109.47212 * 300.00463 * 9 8 6 40 40 H 1.09000 * 109.46684 * 60.00307 * 9 8 6 41 41 H 1.09002 * 110.40974 * 259.20285 * 13 12 10 42 42 H 1.09004 * 110.40411 * 21.62777 * 13 12 10 43 43 H 1.09003 * 109.47273 * 175.64734 * 16 14 13 44 44 H 1.08998 * 109.47547 * 295.65244 * 16 14 13 45 45 H 1.09008 * 109.47165 * 55.65077 * 16 14 13 46 46 H 1.09006 * 109.47186 * 176.98638 * 18 17 14 47 47 H 1.08996 * 109.47426 * 296.98822 * 18 17 14 48 48 H 1.09004 * 109.47169 * 56.99201 * 18 17 14 49 49 H 1.09005 * 109.46574 * 303.01112 * 19 17 14 50 50 H 1.08998 * 109.46924 * 63.01138 * 19 17 14 51 51 H 0.97005 * 120.00034 * 0.02562 * 20 19 17 52 52 H 0.96996 * 119.99776 * 180.02562 * 24 23 21 53 53 H 1.09001 * 110.41090 * 338.36043 * 29 12 10 54 54 H 1.09000 * 110.40866 * 100.68543 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9816 0.8418 5 6 1.6354 2.1265 -1.3073 6 6 3.5420 1.4442 0.1238 7 8 4.1446 0.3952 0.2093 8 7 4.2151 2.6117 0.1448 9 6 5.6750 2.6135 0.2657 10 6 6.1774 4.0342 0.2656 11 8 5.3931 4.9548 0.1740 12 7 7.4983 4.2819 0.3673 13 6 8.6001 3.2996 0.4934 14 6 9.7321 3.8743 -0.3921 15 1 10.7020 3.6878 0.0688 16 6 9.6835 3.2617 -1.7933 17 6 9.4531 5.3902 -0.4595 18 6 9.2094 5.8224 -1.9068 19 6 10.6221 6.1735 0.1411 20 7 10.3068 7.6041 0.1330 21 6 11.2106 8.5072 0.6258 22 1 12.1560 8.1649 1.0200 23 6 10.9116 9.8628 0.6186 24 7 11.7805 10.7308 1.0918 25 14 9.2762 10.4549 -0.0626 26 1 8.2698 10.4922 1.0287 27 1 9.4407 11.8170 -0.6309 28 1 8.8180 9.5264 -1.1271 29 6 8.1773 5.5985 0.3853 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 2.0699 1.5875 -2.1491 36 1 0.5490 2.1252 -1.3970 37 1 1.9991 3.1541 -1.3075 38 1 3.7328 3.4508 0.0805 39 1 5.9631 2.1267 1.1975 40 1 6.1099 2.0739 -0.5756 41 1 8.9263 3.2255 1.5309 42 1 8.2841 2.3244 0.1229 43 1 10.4375 3.7344 -2.4228 44 1 9.8823 2.1920 -1.7293 45 1 8.6961 3.4225 -2.2261 46 1 8.9613 6.8835 -1.9323 47 1 10.1097 5.6455 -2.4953 48 1 8.3835 5.2461 -2.3239 49 1 10.7913 5.8445 1.1664 50 1 11.5203 5.9961 -0.4504 51 1 9.4575 7.9116 -0.2207 52 1 11.5715 11.6780 1.0871 53 1 7.5420 6.3600 -0.0671 54 1 8.4367 5.8785 1.4063 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001183432923.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:50:11 Heat of formation + Delta-G solvation = -93.732992 kcal Electronic energy + Delta-G solvation = -30546.913862 eV Core-core repulsion = 26517.605698 eV Total energy + Delta-G solvation = -4029.308164 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.73584 -40.95505 -39.58406 -36.67865 -36.43912 -35.60761 -34.66718 -33.32728 -31.63335 -31.01464 -29.49359 -28.40255 -26.90161 -26.66967 -25.92633 -24.65638 -22.72547 -22.40797 -21.08645 -20.50848 -20.21167 -19.39346 -18.50665 -17.74254 -17.47420 -17.06614 -16.72389 -16.50105 -16.20364 -16.03605 -15.51834 -15.43154 -15.28589 -15.01171 -14.81710 -14.64643 -14.41983 -14.26665 -13.97032 -13.83453 -13.59782 -13.47188 -13.42998 -13.14279 -12.98184 -12.94616 -12.65641 -12.57425 -12.57019 -12.52659 -12.40111 -12.11360 -11.87967 -11.72942 -11.59109 -11.53998 -11.48773 -11.26833 -11.14126 -10.99046 -10.87297 -10.30044 -9.84666 -9.28506 -8.03893 -5.35476 1.34189 1.36045 1.36444 1.42433 1.54853 1.55935 2.26417 2.45068 3.18290 3.28263 3.47675 3.52642 3.65438 3.74476 3.84615 3.93972 3.97240 4.18569 4.22360 4.23352 4.24203 4.28666 4.40372 4.51012 4.51966 4.60001 4.61991 4.66607 4.72266 4.74007 4.80758 4.86949 4.94896 4.98504 5.00322 5.01935 5.04372 5.10006 5.11044 5.17357 5.23720 5.24326 5.33688 5.36679 5.39819 5.50441 5.56905 5.76442 6.20577 6.37670 6.42441 6.87399 7.07473 7.10746 7.84793 8.01516 9.17698 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.017669 B = 0.002303 C = 0.002131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.297586 B =12156.212020 C =13134.788659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.103 4.103 3 C -0.106 4.106 4 H 0.115 0.885 5 C -0.145 4.145 6 C 0.518 3.482 7 O -0.576 6.576 8 N -0.717 5.717 9 C 0.112 3.888 10 C 0.527 3.473 11 O -0.579 6.579 12 N -0.612 5.612 13 C 0.099 3.901 14 C -0.090 4.090 15 H 0.105 0.895 16 C -0.140 4.140 17 C -0.072 4.072 18 C -0.129 4.129 19 C 0.169 3.831 20 N -0.757 5.757 21 C -0.226 4.226 22 H 0.062 0.938 23 C -0.060 4.060 24 N -0.982 5.982 25 Si 0.943 3.057 26 H -0.282 1.282 27 H -0.295 1.295 28 H -0.256 1.256 29 C 0.117 3.883 30 H 0.061 0.939 31 H 0.067 0.933 32 H 0.060 0.940 33 H 0.058 0.942 34 H 0.056 0.944 35 H 0.054 0.946 36 H 0.089 0.911 37 H 0.062 0.938 38 H 0.414 0.586 39 H 0.110 0.890 40 H 0.111 0.889 41 H 0.092 0.908 42 H 0.110 0.890 43 H 0.060 0.940 44 H 0.076 0.924 45 H 0.051 0.949 46 H 0.030 0.970 47 H 0.070 0.930 48 H 0.064 0.936 49 H 0.033 0.967 50 H 0.034 0.966 51 H 0.363 0.637 52 H 0.257 0.743 53 H 0.057 0.943 54 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.249 -25.457 -5.203 32.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.141 4.141 3 C -0.127 4.127 4 H 0.133 0.867 5 C -0.202 4.202 6 C 0.306 3.694 7 O -0.455 6.455 8 N -0.372 5.372 9 C -0.015 4.015 10 C 0.316 3.684 11 O -0.459 6.459 12 N -0.344 5.344 13 C -0.022 4.022 14 C -0.109 4.109 15 H 0.123 0.877 16 C -0.197 4.197 17 C -0.073 4.073 18 C -0.186 4.186 19 C 0.043 3.957 20 N -0.403 5.403 21 C -0.357 4.357 22 H 0.080 0.920 23 C -0.252 4.252 24 N -0.633 5.633 25 Si 0.771 3.229 26 H -0.209 1.209 27 H -0.221 1.221 28 H -0.181 1.181 29 C -0.006 4.006 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.108 0.892 37 H 0.081 0.919 38 H 0.253 0.747 39 H 0.127 0.873 40 H 0.129 0.871 41 H 0.110 0.890 42 H 0.129 0.871 43 H 0.079 0.921 44 H 0.095 0.905 45 H 0.070 0.930 46 H 0.049 0.951 47 H 0.089 0.911 48 H 0.083 0.917 49 H 0.051 0.949 50 H 0.052 0.948 51 H 0.196 0.804 52 H 0.066 0.934 53 H 0.075 0.925 54 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -19.132 -25.691 -5.113 32.438 hybrid contribution -0.509 1.793 -0.086 1.866 sum -19.641 -23.898 -5.200 31.367 Atomic orbital electron populations 1.21827 0.93723 1.02462 1.02740 1.21319 0.96812 0.93695 1.02303 1.21409 0.89095 1.00017 1.02188 0.86714 1.21850 1.03642 1.00108 0.94594 1.21248 0.91300 0.82385 0.74424 1.90681 1.71252 1.32442 1.51117 1.45845 1.06442 1.10187 1.74746 1.21020 0.82516 0.92290 1.05700 1.20478 0.80714 0.91549 0.75648 1.90699 1.55179 1.47533 1.52511 1.48924 1.05156 1.09531 1.70795 1.22944 0.85146 0.92772 1.01341 1.22204 0.99759 0.91172 0.97767 0.87716 1.21895 1.01877 1.01178 0.94751 1.21647 0.93487 0.96561 0.95590 1.21855 1.02124 0.99777 0.94880 1.20894 0.95119 0.81785 0.97871 1.42780 1.18867 1.03114 1.75512 1.19051 0.97874 0.87832 1.30958 0.91958 1.25383 1.01179 0.96156 1.02487 1.69859 1.37453 1.01725 1.54226 0.85592 0.80780 0.77602 0.78909 1.20871 1.22137 1.18137 1.22347 0.92655 0.85402 1.00176 0.91988 0.91425 0.92131 0.92362 0.92521 0.92637 0.89237 0.91871 0.74718 0.87254 0.87079 0.88984 0.87141 0.92123 0.90471 0.93037 0.95084 0.91127 0.91688 0.94867 0.94821 0.80370 0.93427 0.92478 0.91217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.67 71.99 0.70 -0.58 16 2 C -0.10 -1.35 4.75 30.60 0.15 -1.21 16 3 C -0.11 -1.34 2.73 -11.54 -0.03 -1.37 16 4 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 5 C -0.14 -1.45 8.84 71.98 0.64 -0.81 16 6 C 0.52 9.74 7.15 87.66 0.63 10.37 16 7 O -0.58 -14.56 15.92 -3.01 -0.05 -14.60 16 8 N -0.72 -12.88 5.42 -466.79 -2.53 -15.41 16 9 C 0.11 1.96 5.13 85.63 0.44 2.40 16 10 C 0.53 12.38 7.98 87.66 0.70 13.08 16 11 O -0.58 -17.98 15.93 -3.04 -0.05 -18.03 16 12 N -0.61 -13.57 3.31 -807.08 -2.67 -16.24 16 13 C 0.10 1.48 6.49 86.67 0.56 2.05 16 14 C -0.09 -1.55 3.30 -9.75 -0.03 -1.58 16 15 H 0.10 1.63 7.71 -2.39 -0.02 1.61 16 16 C -0.14 -2.03 7.95 71.98 0.57 -1.46 16 17 C -0.07 -1.86 0.73 -51.26 -0.04 -1.90 16 18 C -0.13 -3.46 7.08 71.98 0.51 -2.95 16 19 C 0.17 5.82 4.85 86.38 0.42 6.24 16 20 N -0.76 -34.21 4.93 -343.46 -1.69 -35.90 16 21 C -0.23 -12.68 10.47 84.03 0.88 -11.80 16 22 H 0.06 3.79 8.06 -2.91 -0.02 3.77 16 23 C -0.06 -3.57 5.50 84.86 0.47 -3.10 16 24 N -0.98 -62.94 13.97 21.65 0.30 -62.64 16 25 Si 0.94 46.39 27.74 68.60 1.90 48.30 16 26 H -0.28 -13.75 7.11 99.48 0.71 -13.04 16 27 H -0.29 -14.64 7.11 99.48 0.71 -13.93 16 28 H -0.26 -11.57 6.52 99.48 0.65 -10.92 16 29 C 0.12 3.35 5.54 86.55 0.48 3.83 16 30 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.07 0.46 6.56 -2.39 -0.02 0.44 16 32 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 33 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.06 0.90 7.95 -2.39 -0.02 0.88 16 35 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 36 H 0.09 0.60 6.56 -2.39 -0.02 0.58 16 37 H 0.06 0.64 7.56 -2.39 -0.02 0.62 16 38 H 0.41 7.32 6.85 -92.71 -0.64 6.69 16 39 H 0.11 1.71 8.14 -2.38 -0.02 1.69 16 40 H 0.11 1.69 7.96 -2.39 -0.02 1.67 16 41 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 42 H 0.11 1.06 7.04 -2.39 -0.02 1.04 16 43 H 0.06 0.96 6.89 -2.39 -0.02 0.94 16 44 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 45 H 0.05 0.81 6.72 -2.38 -0.02 0.80 16 46 H 0.03 0.99 7.01 -2.38 -0.02 0.98 16 47 H 0.07 1.76 6.98 -2.39 -0.02 1.74 16 48 H 0.06 1.55 6.62 -2.38 -0.02 1.54 16 49 H 0.03 1.14 8.14 -2.38 -0.02 1.12 16 50 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 51 H 0.36 16.21 4.14 -92.70 -0.38 15.83 16 52 H 0.26 15.76 8.31 -92.71 -0.77 14.99 16 53 H 0.06 1.92 7.60 -2.39 -0.02 1.90 16 54 H 0.07 2.17 7.87 -2.39 -0.02 2.15 16 Total: -1.00 -75.73 415.95 2.06 -73.67 By element: Atomic # 1 Polarization: 29.84 SS G_CDS: -0.19 Total: 29.66 kcal Atomic # 6 Polarization: 4.16 SS G_CDS: 7.03 Total: 11.19 kcal Atomic # 7 Polarization: -123.59 SS G_CDS: -6.59 Total: -130.18 kcal Atomic # 8 Polarization: -32.54 SS G_CDS: -0.10 Total: -32.63 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 1.90 Total: 48.30 kcal Total: -75.73 2.06 -73.67 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183432923.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.064 kcal (2) G-P(sol) polarization free energy of solvation -75.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds