Wall clock time and date at job start Sat Apr 11 2020 05:50:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.46773 * 2 1 4 4 H 1.09000 * 109.47456 * 304.99673 * 3 2 1 5 5 C 1.52999 * 109.47269 * 65.00046 * 3 2 1 6 6 C 1.53004 * 109.46716 * 185.00110 * 3 2 1 7 7 H 1.09004 * 109.47013 * 299.99234 * 6 3 2 8 8 C 1.52999 * 109.47303 * 59.99957 * 6 3 2 9 9 C 1.50704 * 109.47102 * 180.02562 * 6 3 2 10 10 O 1.21283 * 119.99692 * 342.54341 * 9 6 3 11 11 N 1.34773 * 120.00295 * 162.55403 * 9 6 3 12 12 C 1.44677 * 118.54976 * 185.27820 * 11 9 6 13 13 C 1.54952 * 109.52262 * 269.05178 * 12 11 9 14 14 C 1.47542 * 109.72862 * 290.52011 * 13 12 11 15 15 N 1.46261 * 114.37726 * 62.22113 * 14 13 12 16 16 C 1.46904 * 111.00293 * 148.55034 * 15 14 13 17 17 C 1.50690 * 109.46897 * 64.09084 * 16 15 14 18 18 O 1.21297 * 120.00428 * 354.21172 * 17 16 15 19 19 N 1.34775 * 119.99806 * 173.93780 * 17 16 15 20 20 C 1.37108 * 120.00315 * 180.27400 * 19 17 16 21 21 H 1.07999 * 119.99265 * 0.02562 * 20 19 17 22 22 C 1.38943 * 120.00365 * 180.02562 * 20 19 17 23 23 N 1.31408 * 120.00252 * 180.02562 * 22 20 19 24 24 Si 1.86802 * 119.99879 * 359.97438 * 22 20 19 25 25 H 1.48502 * 109.47122 * 90.00299 * 24 22 20 26 26 H 1.48497 * 109.47161 * 210.00146 * 24 22 20 27 27 H 1.48501 * 109.47294 * 330.00278 * 24 22 20 28 28 C 1.44765 * 110.64148 * 272.24687 * 15 14 13 29 29 C 1.47777 * 118.54583 * 5.24615 * 11 9 6 30 30 H 1.09003 * 109.47328 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47664 * 300.00022 * 1 2 3 32 32 H 1.08998 * 109.47414 * 60.00285 * 1 2 3 33 33 H 1.08993 * 109.47047 * 239.99865 * 2 1 3 34 34 H 1.09006 * 109.47097 * 119.99723 * 2 1 3 35 35 H 1.09010 * 109.46831 * 179.97438 * 5 3 2 36 36 H 1.08991 * 109.47258 * 299.99524 * 5 3 2 37 37 H 1.08999 * 109.47007 * 60.00222 * 5 3 2 38 38 H 1.08998 * 109.46767 * 172.46830 * 8 6 3 39 39 H 1.09000 * 109.46731 * 292.46751 * 8 6 3 40 40 H 1.08999 * 109.46838 * 52.46855 * 8 6 3 41 41 H 1.08992 * 109.46720 * 149.02843 * 12 11 9 42 42 H 1.09007 * 109.45227 * 29.05731 * 12 11 9 43 43 H 1.09000 * 109.42622 * 170.44084 * 13 12 11 44 44 H 1.08999 * 109.42812 * 50.59849 * 13 12 11 45 45 H 1.08994 * 108.50328 * 300.95061 * 14 13 12 46 46 H 1.09006 * 108.37825 * 183.39369 * 14 13 12 47 47 H 1.09006 * 109.46853 * 304.08882 * 16 15 14 48 48 H 1.08994 * 109.46982 * 184.09238 * 16 15 14 49 49 H 0.97003 * 120.00315 * 0.27952 * 19 17 16 50 50 H 0.96996 * 120.00152 * 179.97438 * 23 22 20 51 51 H 1.08999 * 109.43899 * 214.22427 * 28 15 14 52 52 H 1.09002 * 109.43188 * 334.09688 * 28 15 14 53 53 H 1.09000 * 109.06949 * 258.67316 * 29 11 9 54 54 H 1.08999 * 109.06465 * 17.61013 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 1.6351 2.1265 1.3073 6 6 3.5647 1.4443 -0.1258 7 1 3.9994 0.9054 0.7162 8 6 3.9695 0.7603 -1.4331 9 6 4.0671 2.8651 -0.1251 10 8 3.3023 3.7788 -0.3513 11 7 5.3663 3.1205 0.1265 12 6 5.7919 4.4990 0.2339 13 6 6.2392 5.0128 -1.1578 14 6 7.4960 4.3489 -1.5535 15 7 7.3919 2.8972 -1.6990 16 6 8.3124 2.4044 -2.7325 17 6 9.7337 2.6620 -2.3033 18 8 9.9570 3.2954 -1.2933 19 7 10.7569 2.1840 -3.0389 20 6 12.0501 2.4136 -2.6456 21 1 12.2487 2.9772 -1.7460 22 6 13.1049 1.9212 -3.4042 23 7 14.3443 2.1408 -3.0269 24 14 12.7610 0.9458 -4.9597 25 1 12.6862 1.8718 -6.1183 26 1 13.8535 -0.0356 -5.1803 27 1 11.4701 0.2257 -4.8174 28 6 7.6333 2.2388 -0.4326 29 6 6.2931 1.9798 0.2812 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 1.9988 3.1542 1.3075 36 1 0.5489 2.1253 1.3969 37 1 2.0698 1.5876 2.1491 38 1 5.0419 0.8788 -1.5882 39 1 3.7252 -0.3006 -1.3788 40 1 3.4297 1.2154 -2.2635 41 1 6.6260 4.5683 0.9320 42 1 4.9633 5.1075 0.5966 43 1 6.3970 6.0904 -1.1129 44 1 5.4650 4.7908 -1.8923 45 1 8.2543 4.5677 -0.8019 46 1 7.8220 4.7694 -2.5049 47 1 8.1163 2.9231 -3.6709 48 1 8.1631 1.3336 -2.8712 49 1 10.5784 1.6775 -3.8468 50 1 15.0806 1.7968 -3.5562 51 1 8.1401 1.2899 -0.6079 52 1 8.2605 2.8742 0.1928 53 1 6.4809 1.8149 1.3421 54 1 5.8319 1.0867 -0.1405 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001197587110.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:50:31 Heat of formation + Delta-G solvation = -90.030128 kcal Electronic energy + Delta-G solvation = -31652.350405 eV Core-core repulsion = 27623.202810 eV Total energy + Delta-G solvation = -4029.147596 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.72067 -40.75220 -38.84418 -37.54868 -36.24362 -35.55504 -34.30557 -33.77085 -32.58449 -30.56499 -30.12478 -28.08764 -27.14750 -25.57575 -25.28529 -24.74646 -22.85344 -22.00039 -21.23535 -20.87827 -20.14064 -19.45345 -18.16973 -17.87102 -17.39804 -16.96054 -16.62797 -16.28834 -16.10877 -15.75074 -15.64002 -15.42015 -15.15809 -14.99402 -14.75661 -14.59898 -14.36978 -14.19689 -13.92931 -13.74750 -13.60676 -13.36927 -13.14189 -13.01515 -12.86403 -12.69678 -12.58831 -12.48303 -12.41960 -12.26814 -12.15270 -12.01589 -11.94226 -11.80384 -11.66997 -11.52754 -11.43635 -11.38840 -11.24267 -10.92533 -10.43255 -10.24640 -9.49778 -9.16618 -8.42978 -6.03331 1.29643 1.34577 1.43724 1.76381 1.92420 2.14972 2.21725 2.89795 2.97733 3.14573 3.55340 3.77767 3.87252 4.01623 4.02271 4.06778 4.12650 4.21520 4.27456 4.32014 4.43055 4.45843 4.48737 4.60412 4.65007 4.67021 4.70783 4.72557 4.76616 4.81141 4.82399 4.84462 4.91293 4.98961 5.02752 5.09040 5.11561 5.18104 5.19197 5.27791 5.34290 5.35688 5.43919 5.51752 5.58839 5.62487 5.74460 5.91716 5.99431 6.12209 6.51197 6.56948 6.87099 7.33976 7.38384 7.93619 8.74421 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.019579 B = 0.002543 C = 0.002362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.791537 B =11006.671367 C =11851.546515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.116 4.116 3 C -0.068 4.068 4 H 0.056 0.944 5 C -0.149 4.149 6 C -0.102 4.102 7 H 0.109 0.891 8 C -0.144 4.144 9 C 0.516 3.484 10 O -0.581 6.581 11 N -0.592 5.592 12 C 0.121 3.879 13 C -0.117 4.117 14 C 0.063 3.937 15 N -0.494 5.494 16 C 0.049 3.951 17 C 0.419 3.581 18 O -0.615 6.615 19 N -0.589 5.589 20 C -0.325 4.325 21 H 0.054 0.946 22 C -0.016 4.016 23 N -0.934 5.934 24 Si 0.963 3.037 25 H -0.261 1.261 26 H -0.277 1.277 27 H -0.227 1.227 28 C 0.046 3.954 29 C 0.112 3.888 30 H 0.062 0.938 31 H 0.054 0.946 32 H 0.047 0.953 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.039 0.961 36 H 0.060 0.940 37 H 0.059 0.941 38 H 0.070 0.930 39 H 0.090 0.910 40 H 0.048 0.952 41 H 0.071 0.929 42 H 0.074 0.926 43 H 0.083 0.917 44 H 0.059 0.941 45 H 0.032 0.968 46 H 0.049 0.951 47 H 0.113 0.887 48 H 0.126 0.874 49 H 0.389 0.611 50 H 0.278 0.722 51 H 0.079 0.921 52 H 0.034 0.966 53 H 0.080 0.920 54 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.584 -7.805 2.761 26.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.154 4.154 3 C -0.087 4.087 4 H 0.075 0.925 5 C -0.207 4.207 6 C -0.124 4.124 7 H 0.127 0.873 8 C -0.201 4.201 9 C 0.305 3.695 10 O -0.461 6.461 11 N -0.323 5.323 12 C -0.003 4.003 13 C -0.156 4.156 14 C -0.065 4.065 15 N -0.216 5.216 16 C -0.083 4.083 17 C 0.206 3.794 18 O -0.500 6.500 19 N -0.230 5.230 20 C -0.454 4.454 21 H 0.072 0.928 22 C -0.215 4.215 23 N -0.575 5.575 24 Si 0.783 3.217 25 H -0.185 1.185 26 H -0.202 1.202 27 H -0.150 1.150 28 C -0.084 4.084 29 C -0.010 4.010 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.066 0.934 33 H 0.093 0.907 34 H 0.090 0.910 35 H 0.058 0.942 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.089 0.911 39 H 0.109 0.891 40 H 0.068 0.932 41 H 0.090 0.910 42 H 0.092 0.908 43 H 0.101 0.899 44 H 0.077 0.923 45 H 0.051 0.949 46 H 0.067 0.933 47 H 0.131 0.869 48 H 0.144 0.856 49 H 0.225 0.775 50 H 0.088 0.912 51 H 0.097 0.903 52 H 0.052 0.948 53 H 0.098 0.902 54 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -26.068 -7.024 3.168 27.183 hybrid contribution 1.868 0.398 -0.489 1.971 sum -24.200 -6.626 2.680 25.233 Atomic orbital electron populations 1.21819 0.95776 1.01918 1.01633 1.21615 0.96049 0.94693 1.03001 1.20929 0.92438 0.97057 0.98294 0.92518 1.21907 1.01569 1.00138 0.97045 1.21443 0.97359 0.91732 1.01821 0.87314 1.21901 1.02267 1.01482 0.94464 1.21176 0.81389 0.92198 0.74688 1.90626 1.56620 1.48506 1.50338 1.47668 1.08073 1.06556 1.69979 1.21331 0.99659 0.82662 0.96655 1.21231 0.96979 0.99732 0.97675 1.20910 0.96916 0.88006 1.00716 1.61476 1.47821 1.05161 1.07098 1.22471 0.84657 1.04227 0.96901 1.22257 0.89069 0.82814 0.85291 1.90540 1.86081 1.44959 1.28442 1.42221 1.05293 1.50342 1.25139 1.18979 0.82225 1.34206 1.10030 0.92750 1.26130 0.94054 0.98715 1.02606 1.69804 0.99681 1.46695 1.41327 0.85385 0.80162 0.78704 0.77409 1.18538 1.20214 1.15048 1.22314 0.95829 0.99529 0.90694 1.22420 0.89245 0.88973 1.00372 0.91881 0.92734 0.93369 0.90720 0.90984 0.94206 0.92086 0.92228 0.91076 0.89123 0.93238 0.91027 0.90767 0.89897 0.92260 0.94920 0.93263 0.86906 0.85589 0.77537 0.91222 0.90274 0.94759 0.90219 0.86944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 9.67 71.98 0.70 -1.08 16 2 C -0.12 -1.36 5.19 30.59 0.16 -1.20 16 3 C -0.07 -1.14 1.59 -10.79 -0.02 -1.16 16 4 H 0.06 1.21 7.92 -2.39 -0.02 1.19 16 5 C -0.15 -2.68 8.65 71.98 0.62 -2.06 16 6 C -0.10 -1.70 1.45 -11.54 -0.02 -1.72 16 7 H 0.11 1.39 7.32 -2.39 -0.02 1.38 16 8 C -0.14 -2.06 8.13 71.98 0.59 -1.47 16 9 C 0.52 12.34 6.18 87.66 0.54 12.88 16 10 O -0.58 -18.05 13.98 -3.04 -0.04 -18.10 16 11 N -0.59 -13.61 2.53 -817.14 -2.07 -15.68 16 12 C 0.12 3.03 5.40 87.39 0.47 3.50 16 13 C -0.12 -3.09 6.02 29.56 0.18 -2.92 16 14 C 0.06 1.91 3.98 84.72 0.34 2.24 16 15 N -0.49 -13.54 4.37 -916.52 -4.01 -17.54 16 16 C 0.05 1.37 5.48 85.55 0.47 1.84 16 17 C 0.42 17.20 7.08 87.65 0.62 17.82 16 18 O -0.61 -30.62 12.14 -3.08 -0.04 -30.66 16 19 N -0.59 -26.13 5.09 -306.99 -1.56 -27.69 16 20 C -0.32 -18.32 10.16 84.04 0.85 -17.47 16 21 H 0.05 3.68 7.39 -2.91 -0.02 3.66 16 22 C -0.02 -0.89 5.50 84.93 0.47 -0.42 16 23 N -0.93 -55.38 13.96 21.66 0.30 -55.08 16 24 Si 0.96 37.64 27.74 68.60 1.90 39.54 16 25 H -0.26 -9.79 7.11 99.48 0.71 -9.08 16 26 H -0.28 -10.84 7.11 99.48 0.71 -10.13 16 27 H -0.23 -7.30 6.52 99.48 0.65 -6.66 16 28 C 0.05 1.22 4.28 87.05 0.37 1.59 16 29 C 0.11 2.18 5.73 86.48 0.50 2.68 16 30 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.05 0.64 6.57 -2.38 -0.02 0.63 16 32 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.07 0.76 6.34 -2.39 -0.02 0.75 16 34 H 0.07 0.71 8.14 -2.38 -0.02 0.69 16 35 H 0.04 0.94 6.17 -2.38 -0.01 0.92 16 36 H 0.06 0.99 6.56 -2.39 -0.02 0.98 16 37 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.07 1.08 6.02 -2.39 -0.01 1.07 16 39 H 0.09 0.87 6.74 -2.39 -0.02 0.85 16 40 H 0.05 0.84 8.13 -2.39 -0.02 0.82 16 41 H 0.07 1.78 8.09 -2.39 -0.02 1.76 16 42 H 0.07 1.93 7.32 -2.38 -0.02 1.91 16 43 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 44 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 45 H 0.03 1.21 5.81 -2.39 -0.01 1.20 16 46 H 0.05 1.56 7.54 -2.38 -0.02 1.54 16 47 H 0.11 2.75 7.92 -2.38 -0.02 2.73 16 48 H 0.13 2.71 8.07 -2.39 -0.02 2.69 16 49 H 0.39 14.29 5.76 -92.71 -0.53 13.76 16 50 H 0.28 15.12 8.31 -92.71 -0.77 14.35 16 51 H 0.08 2.06 7.47 -2.39 -0.02 2.04 16 52 H 0.03 1.15 6.23 -2.39 -0.01 1.14 16 53 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 54 H 0.11 1.68 4.07 -2.39 -0.01 1.67 16 Total: -1.00 -74.93 397.80 1.63 -73.30 By element: Atomic # 1 Polarization: 38.55 SS G_CDS: 0.30 Total: 38.85 kcal Atomic # 6 Polarization: 6.22 SS G_CDS: 6.84 Total: 13.06 kcal Atomic # 7 Polarization: -108.66 SS G_CDS: -7.34 Total: -116.00 kcal Atomic # 8 Polarization: -48.68 SS G_CDS: -0.08 Total: -48.76 kcal Atomic # 14 Polarization: 37.64 SS G_CDS: 1.90 Total: 39.54 kcal Total: -74.93 1.63 -73.30 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001197587110.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.728 kcal (2) G-P(sol) polarization free energy of solvation -74.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds