Wall clock time and date at job start Sat Apr 11 2020 05:50:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47155 * 2 1 4 4 N 1.46893 * 109.47046 * 179.97438 * 3 2 1 5 5 C 1.48669 * 111.11434 * 285.41734 * 4 3 2 6 6 C 1.54381 * 104.67615 * 201.09750 * 5 4 3 7 7 C 1.54260 * 105.05924 * 23.77292 * 6 5 4 8 8 C 1.48560 * 111.00093 * 169.99948 * 4 3 2 9 9 H 1.08997 * 110.41008 * 40.13993 * 8 4 3 10 10 C 1.50700 * 110.41114 * 277.82245 * 8 4 3 11 11 O 1.21278 * 120.00400 * 341.68803 * 10 8 4 12 12 N 1.34777 * 120.00132 * 161.69119 * 10 8 4 13 13 C 1.47519 * 118.75691 * 355.07790 * 12 10 8 14 14 C 1.53568 * 111.02759 * 138.34574 * 13 12 10 15 15 C 1.51527 * 109.58384 * 320.02228 * 14 13 12 16 16 O 1.42154 * 108.75426 * 91.40347 * 15 14 13 17 17 C 1.38024 * 119.43995 * 272.76763 * 16 15 14 18 18 H 1.08996 * 109.47230 * 303.43146 * 17 16 15 19 19 C 1.52997 * 109.46813 * 183.42870 * 17 16 15 20 20 N 1.46501 * 109.47256 * 64.99290 * 19 17 16 21 21 C 1.36937 * 120.00277 * 179.97438 * 20 19 17 22 22 H 1.07996 * 119.99599 * 0.02562 * 21 20 19 23 23 C 1.38807 * 120.00077 * 179.72528 * 21 20 19 24 24 N 1.31622 * 119.99982 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 119.99978 * 180.02562 * 23 21 20 26 26 H 1.48492 * 109.47504 * 59.99991 * 25 23 21 27 27 H 1.48501 * 109.47107 * 180.02562 * 25 23 21 28 28 H 1.48506 * 109.47142 * 299.99792 * 25 23 21 29 29 C 1.45124 * 118.75890 * 175.05648 * 12 10 8 30 30 H 1.09002 * 109.47040 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46794 * 299.99989 * 1 2 3 32 32 H 1.08992 * 109.47070 * 60.00280 * 1 2 3 33 33 H 1.09000 * 109.47282 * 239.99853 * 2 1 3 34 34 H 1.09008 * 109.47059 * 119.99980 * 2 1 3 35 35 H 1.08996 * 109.46677 * 59.99823 * 3 2 1 36 36 H 1.08992 * 109.46903 * 299.99822 * 3 2 1 37 37 H 1.09007 * 110.44241 * 82.26141 * 5 4 3 38 38 H 1.08998 * 110.40505 * 319.92278 * 5 4 3 39 39 H 1.08995 * 110.32875 * 264.87416 * 6 5 4 40 40 H 1.08997 * 110.32036 * 142.66504 * 6 5 4 41 41 H 1.08996 * 110.32681 * 241.10041 * 7 6 5 42 42 H 1.08999 * 110.32614 * 118.89453 * 7 6 5 43 43 H 1.09001 * 109.16395 * 258.74678 * 13 12 10 44 44 H 1.09000 * 109.16292 * 17.99767 * 13 12 10 45 45 H 1.09002 * 109.45071 * 80.06225 * 14 13 12 46 46 H 1.09004 * 109.44990 * 200.01027 * 14 13 12 47 47 H 1.09000 * 109.59815 * 211.18340 * 15 14 13 48 48 H 1.09004 * 109.59429 * 331.47852 * 15 14 13 49 49 H 1.09004 * 109.47176 * 304.99084 * 19 17 16 50 50 H 1.09006 * 109.46929 * 184.99696 * 19 17 16 51 51 H 0.96996 * 119.99560 * 0.02562 * 20 19 17 52 52 H 0.96993 * 119.99929 * 179.97438 * 24 23 21 53 53 H 1.09005 * 109.45937 * 149.28853 * 29 12 10 54 54 H 1.08993 * 109.45891 * 29.32738 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4425 0.0006 5 6 4.0439 1.0740 1.3379 6 6 5.4846 1.6286 1.3492 7 6 5.4830 2.7696 0.3110 8 6 4.0415 2.8083 -0.2402 9 1 3.4484 3.5479 0.2977 10 6 4.0510 3.1162 -1.7154 11 8 3.9810 2.2146 -2.5235 12 7 4.1374 4.3935 -2.1367 13 6 4.1104 5.4750 -1.1338 14 6 5.1386 6.5647 -1.4709 15 6 6.4138 5.9210 -1.9763 16 8 6.3407 5.8118 -3.3918 17 6 5.7494 4.7000 -3.9568 18 1 6.2491 3.8005 -3.5975 19 6 5.8704 4.7768 -5.4801 20 7 7.2827 4.7011 -5.8622 21 6 7.6381 4.7500 -7.1837 22 1 6.8772 4.8447 -7.9443 23 6 8.9766 4.6841 -7.5454 24 7 9.9042 4.5741 -6.6181 25 14 9.4614 4.7515 -9.3481 26 1 8.9927 6.0304 -9.9393 27 1 10.9390 4.6627 -9.4670 28 1 8.8380 3.6140 -10.0712 29 6 4.2538 4.6529 -3.5598 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8901 35 1 1.6766 1.9563 0.8900 36 1 1.6767 1.9563 -0.8899 37 1 4.0527 -0.0093 1.4591 38 1 3.4513 1.5391 2.1256 39 1 6.1916 0.8522 1.0572 40 1 5.7333 2.0161 2.3371 41 1 6.1892 2.5532 -0.4905 42 1 5.7310 3.7171 0.7894 43 1 3.1144 5.9173 -1.1112 44 1 4.3395 5.0589 -0.1527 45 1 4.7330 7.2207 -2.2411 46 1 5.3566 7.1474 -0.5758 47 1 7.2690 6.5383 -1.7011 48 1 6.5221 4.9296 -1.5363 49 1 5.4490 5.7188 -5.8311 50 1 5.3272 3.9457 -5.9300 51 1 7.9660 4.6157 -5.1790 52 1 10.8395 4.5276 -6.8708 53 1 3.7856 5.6090 -3.7942 54 1 3.7554 3.8588 -4.1157 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001200634870.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:50:45 Heat of formation + Delta-G solvation = -78.965003 kcal Electronic energy + Delta-G solvation = -31680.051826 eV Core-core repulsion = 27651.384050 eV Total energy + Delta-G solvation = -4028.667776 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.92379 -40.30525 -38.89733 -36.93609 -36.24974 -35.49219 -34.33335 -32.67646 -31.81279 -31.24927 -29.75996 -27.77744 -26.69425 -26.44383 -24.80261 -23.30673 -22.78934 -22.42921 -22.23189 -21.40564 -19.87935 -19.27962 -18.65249 -17.87724 -17.59265 -16.98063 -16.82497 -16.60183 -16.32196 -16.08832 -15.79827 -15.17811 -15.10887 -15.05501 -14.83252 -14.77597 -14.38578 -14.13098 -13.96083 -13.85980 -13.71065 -13.45825 -13.32168 -13.12796 -12.79899 -12.73903 -12.68039 -12.54918 -12.31424 -12.30364 -12.24611 -12.14962 -11.97512 -11.87240 -11.82716 -11.63594 -11.48642 -11.45388 -10.98236 -10.77385 -10.56460 -9.65616 -9.41869 -9.03266 -7.95124 -5.25366 1.45335 1.50460 1.52790 1.56367 1.82545 2.55471 2.71589 2.91864 3.34515 3.37979 3.54194 3.63598 3.78247 3.84336 3.86095 3.98806 4.05119 4.07243 4.12526 4.14206 4.21850 4.28039 4.36729 4.43773 4.45335 4.46720 4.52879 4.54388 4.66175 4.67375 4.68169 4.71783 4.82577 4.84291 4.85807 4.86898 4.99432 5.06782 5.08371 5.12075 5.15164 5.19074 5.20882 5.28878 5.36222 5.45451 5.50977 5.77924 6.03623 6.25157 6.30254 6.74315 7.16832 7.31197 8.04720 8.30556 9.28698 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.014472 B = 0.002672 C = 0.002551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1934.317529 B =10476.771494 C =10972.251494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.114 4.114 3 C 0.052 3.948 4 N -0.521 5.521 5 C 0.036 3.964 6 C -0.119 4.119 7 C -0.113 4.113 8 C 0.051 3.949 9 H 0.104 0.896 10 C 0.508 3.492 11 O -0.565 6.565 12 N -0.610 5.610 13 C 0.099 3.901 14 C -0.155 4.155 15 C 0.063 3.937 16 O -0.396 6.396 17 C 0.109 3.891 18 H 0.015 0.985 19 C 0.163 3.837 20 N -0.740 5.740 21 C -0.250 4.250 22 H 0.077 0.923 23 C -0.078 4.078 24 N -0.971 5.971 25 Si 0.981 3.019 26 H -0.274 1.274 27 H -0.293 1.293 28 H -0.278 1.278 29 C 0.095 3.905 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.046 0.954 33 H 0.044 0.956 34 H 0.071 0.929 35 H 0.058 0.942 36 H 0.049 0.951 37 H 0.084 0.916 38 H 0.069 0.931 39 H 0.062 0.938 40 H 0.103 0.897 41 H 0.042 0.958 42 H 0.108 0.892 43 H 0.092 0.908 44 H 0.107 0.893 45 H 0.074 0.926 46 H 0.123 0.877 47 H 0.096 0.904 48 H 0.043 0.957 49 H 0.034 0.966 50 H 0.032 0.968 51 H 0.373 0.627 52 H 0.252 0.748 53 H 0.103 0.897 54 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.695 -0.088 25.894 31.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.152 4.152 3 C -0.076 4.076 4 N -0.246 5.246 5 C -0.091 4.091 6 C -0.157 4.157 7 C -0.151 4.151 8 C -0.061 4.061 9 H 0.121 0.879 10 C 0.297 3.703 11 O -0.442 6.442 12 N -0.343 5.343 13 C -0.022 4.022 14 C -0.193 4.193 15 C -0.013 4.013 16 O -0.315 6.315 17 C 0.048 3.952 18 H 0.033 0.967 19 C 0.036 3.964 20 N -0.383 5.383 21 C -0.381 4.381 22 H 0.095 0.905 23 C -0.270 4.270 24 N -0.622 5.622 25 Si 0.809 3.191 26 H -0.200 1.200 27 H -0.219 1.219 28 H -0.204 1.204 29 C -0.029 4.029 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.066 0.934 33 H 0.063 0.937 34 H 0.089 0.911 35 H 0.077 0.923 36 H 0.068 0.932 37 H 0.102 0.898 38 H 0.087 0.913 39 H 0.081 0.919 40 H 0.121 0.879 41 H 0.061 0.939 42 H 0.127 0.873 43 H 0.110 0.890 44 H 0.125 0.875 45 H 0.093 0.907 46 H 0.141 0.859 47 H 0.114 0.886 48 H 0.062 0.938 49 H 0.052 0.948 50 H 0.050 0.950 51 H 0.204 0.796 52 H 0.061 0.939 53 H 0.121 0.879 54 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -18.579 -0.776 24.770 30.973 hybrid contribution 0.539 0.058 -0.587 0.799 sum -18.041 -0.718 24.183 30.179 Atomic orbital electron populations 1.21707 0.94385 1.02336 1.02004 1.21403 0.96280 0.95542 1.01929 1.22280 0.86635 0.98213 1.00505 1.65021 1.08976 1.21271 1.29302 1.23229 0.95312 1.01858 0.88701 1.22309 0.96492 0.97180 0.99672 1.22295 0.92607 1.01593 0.98605 1.22676 0.99221 0.93134 0.91052 0.87876 1.21171 0.75208 0.82059 0.91899 1.90701 1.49661 1.46617 1.57206 1.48052 1.72740 1.06703 1.06840 1.22374 1.01028 0.87518 0.91254 1.22431 0.94634 0.98207 1.04028 1.22428 0.99135 1.00253 0.79478 1.86357 1.79838 1.42562 1.22767 1.21824 0.92748 0.87440 0.93161 0.96669 1.20742 0.86317 0.98425 0.90948 1.42418 1.02455 1.88695 1.04684 1.19645 0.92048 1.41311 0.85135 0.90469 1.25669 0.95711 1.03417 1.02214 1.69847 0.99840 1.58929 1.33545 0.85113 0.76443 0.78300 0.79291 1.20019 1.21878 1.20375 1.22058 0.95832 1.03144 0.81897 0.91885 0.91449 0.93437 0.93670 0.91066 0.92345 0.93198 0.89785 0.91310 0.91890 0.87903 0.93856 0.87329 0.89013 0.87506 0.90694 0.85853 0.88607 0.93824 0.94827 0.95032 0.79551 0.93946 0.87905 0.90705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 9.91 71.98 0.71 -1.26 16 2 C -0.11 -1.96 6.05 30.60 0.19 -1.77 16 3 C 0.05 0.94 4.78 86.31 0.41 1.35 16 4 N -0.52 -10.94 4.62 -860.74 -3.98 -14.92 16 5 C 0.04 0.51 5.92 86.43 0.51 1.02 16 6 C -0.12 -1.61 7.00 31.49 0.22 -1.39 16 7 C -0.11 -1.91 6.24 31.49 0.20 -1.71 16 8 C 0.05 0.98 1.66 44.32 0.07 1.05 16 9 H 0.10 1.30 6.54 -2.39 -0.02 1.28 16 10 C 0.51 14.36 6.39 87.66 0.56 14.92 16 11 O -0.56 -22.24 15.99 -3.02 -0.05 -22.29 16 12 N -0.61 -14.81 2.19 -817.94 -1.79 -16.60 16 13 C 0.10 1.39 5.88 86.38 0.51 1.89 16 14 C -0.16 -2.40 5.78 30.30 0.18 -2.22 16 15 C 0.06 1.57 6.37 71.50 0.46 2.03 16 16 O -0.40 -14.47 9.38 -117.97 -1.11 -15.58 16 17 C 0.11 4.17 2.68 31.21 0.08 4.25 16 18 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 19 C 0.16 7.43 5.92 86.38 0.51 7.94 16 20 N -0.74 -42.07 5.54 -343.45 -1.90 -43.97 16 21 C -0.25 -15.07 9.99 84.03 0.84 -14.23 16 22 H 0.08 4.42 7.83 -2.91 -0.02 4.40 16 23 C -0.08 -4.77 5.50 84.86 0.47 -4.30 16 24 N -0.97 -62.99 13.06 21.65 0.28 -62.71 16 25 Si 0.98 48.45 29.55 68.60 2.03 50.48 16 26 H -0.27 -12.92 7.11 99.48 0.71 -12.21 16 27 H -0.29 -14.40 7.11 99.48 0.71 -13.69 16 28 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 29 C 0.10 2.88 4.90 87.25 0.43 3.30 16 30 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.07 1.05 7.48 -2.38 -0.02 1.03 16 35 H 0.06 0.76 7.77 -2.39 -0.02 0.74 16 36 H 0.05 1.12 7.78 -2.39 -0.02 1.10 16 37 H 0.08 1.20 7.86 -2.38 -0.02 1.18 16 38 H 0.07 0.65 7.75 -2.39 -0.02 0.64 16 39 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 41 H 0.04 1.06 7.85 -2.39 -0.02 1.04 16 42 H 0.11 1.12 7.54 -2.39 -0.02 1.10 16 43 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 44 H 0.11 0.95 4.88 -2.39 -0.01 0.94 16 45 H 0.07 1.35 8.01 -2.39 -0.02 1.33 16 46 H 0.12 1.02 8.14 -2.38 -0.02 1.00 16 47 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 48 H 0.04 1.12 7.41 -2.38 -0.02 1.10 16 49 H 0.03 1.49 8.14 -2.38 -0.02 1.48 16 50 H 0.03 1.46 8.14 -2.38 -0.02 1.44 16 51 H 0.37 22.78 7.65 -92.71 -0.71 22.07 16 52 H 0.25 15.70 8.31 -92.71 -0.77 14.93 16 53 H 0.10 2.65 8.11 -2.38 -0.02 2.63 16 54 H 0.07 2.54 7.21 -2.39 -0.02 2.53 16 Total: -1.00 -82.49 414.33 -0.02 -82.52 By element: Atomic # 1 Polarization: 32.05 SS G_CDS: 0.15 Total: 32.20 kcal Atomic # 6 Polarization: 4.53 SS G_CDS: 6.34 Total: 10.87 kcal Atomic # 7 Polarization: -130.81 SS G_CDS: -7.39 Total: -138.20 kcal Atomic # 8 Polarization: -36.71 SS G_CDS: -1.16 Total: -37.86 kcal Atomic # 14 Polarization: 48.45 SS G_CDS: 2.03 Total: 50.48 kcal Total: -82.49 -0.02 -82.52 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200634870.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.551 kcal (2) G-P(sol) polarization free energy of solvation -82.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds