Wall clock time and date at job start Sat Apr 11 2020 05:50:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53008 * 109.47209 * 2 1 4 4 H 1.09007 * 109.46713 * 305.00074 * 3 2 1 5 5 C 1.52996 * 109.47133 * 64.99614 * 3 2 1 6 6 C 1.53001 * 109.47140 * 185.00206 * 3 2 1 7 7 H 1.08994 * 109.46941 * 299.99703 * 6 3 2 8 8 C 1.52997 * 109.46785 * 179.97438 * 6 3 2 9 9 C 1.50693 * 109.47193 * 60.00059 * 6 3 2 10 10 O 1.21279 * 120.00386 * 23.36295 * 9 6 3 11 11 N 1.34777 * 119.99983 * 203.36898 * 9 6 3 12 12 C 1.46926 * 120.62833 * 4.57702 * 11 9 6 13 13 C 1.53628 * 108.54334 * 126.37304 * 12 11 9 14 14 C 1.53044 * 109.24300 * 54.85402 * 13 12 11 15 15 N 1.46897 * 109.45978 * 178.49635 * 14 13 12 16 16 C 1.46903 * 110.99728 * 275.06615 * 15 14 13 17 17 C 1.50696 * 109.47365 * 180.02562 * 16 15 14 18 18 O 1.21296 * 119.99983 * 359.97438 * 17 16 15 19 19 N 1.34773 * 120.00453 * 180.02562 * 17 16 15 20 20 C 1.37090 * 120.00467 * 180.02562 * 19 17 16 21 21 H 1.08008 * 119.99976 * 359.97438 * 20 19 17 22 22 C 1.38945 * 120.00542 * 179.97438 * 20 19 17 23 23 N 1.31413 * 120.00772 * 179.97438 * 22 20 19 24 24 Si 1.86806 * 119.99830 * 359.97438 * 22 20 19 25 25 H 1.48492 * 109.47442 * 90.00016 * 24 22 20 26 26 H 1.48505 * 109.47171 * 210.00214 * 24 22 20 27 27 H 1.48508 * 109.46972 * 329.99752 * 24 22 20 28 28 C 1.53049 * 109.53745 * 298.51326 * 14 13 12 29 29 C 1.46925 * 120.63185 * 184.85906 * 11 9 6 30 30 H 1.09005 * 109.46881 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47328 * 299.99646 * 1 2 3 32 32 H 1.09002 * 109.47279 * 59.99894 * 1 2 3 33 33 H 1.08998 * 109.47499 * 119.99633 * 2 1 3 34 34 H 1.09003 * 109.47328 * 240.00354 * 2 1 3 35 35 H 1.08995 * 109.47243 * 179.97438 * 5 3 2 36 36 H 1.08998 * 109.47722 * 300.00859 * 5 3 2 37 37 H 1.09011 * 109.46670 * 60.00164 * 5 3 2 38 38 H 1.09004 * 109.47161 * 65.94124 * 8 6 3 39 39 H 1.09002 * 109.46895 * 185.94232 * 8 6 3 40 40 H 1.09007 * 109.47352 * 305.94005 * 8 6 3 41 41 H 1.09001 * 109.58773 * 246.20158 * 12 11 9 42 42 H 1.08992 * 109.58905 * 6.63289 * 12 11 9 43 43 H 1.09001 * 109.63081 * 294.86522 * 13 12 11 44 44 H 1.08993 * 109.43255 * 174.72603 * 13 12 11 45 45 H 1.09001 * 109.45679 * 58.52952 * 14 13 12 46 46 H 1.00903 * 110.99953 * 151.12132 * 15 14 13 47 47 H 1.09000 * 109.47164 * 300.00460 * 16 15 14 48 48 H 1.09007 * 109.46934 * 59.99959 * 16 15 14 49 49 H 0.97002 * 119.99605 * 359.97438 * 19 17 16 50 50 H 0.96997 * 120.00331 * 179.97438 * 23 22 20 51 51 H 1.08994 * 109.49499 * 301.41456 * 28 14 13 52 52 H 1.08995 * 109.51950 * 181.32940 * 28 14 13 53 53 H 1.09000 * 109.58693 * 353.37653 * 29 11 9 54 54 H 1.09001 * 109.58748 * 113.65311 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 -0.8419 5 6 1.6352 2.1266 1.3073 6 6 3.5648 1.4444 -0.1258 7 1 3.9994 0.9054 0.7160 8 6 4.0747 2.8869 -0.1264 9 6 3.9635 0.7707 -1.4134 10 8 3.1782 0.7125 -2.3358 11 7 5.1927 0.2326 -1.5400 12 6 6.1192 0.2060 -0.4000 13 6 6.5958 -1.2395 -0.1914 14 6 7.1923 -1.7674 -1.4982 15 7 7.6824 -3.1372 -1.2943 16 6 9.0451 -3.1325 -0.7457 17 6 9.5132 -4.5516 -0.5511 18 8 8.7832 -5.4761 -0.8404 19 7 10.7426 -4.7937 -0.0546 20 6 11.1686 -6.0847 0.1220 21 1 10.5189 -6.9079 -0.1364 22 6 12.4362 -6.3342 0.6333 23 7 12.8445 -7.5718 0.8031 24 14 13.5603 -4.9105 1.0796 25 1 13.3354 -4.5276 2.4966 26 1 14.9756 -5.3211 0.8965 27 1 13.2635 -3.7511 0.2003 28 6 6.1179 -1.7674 -2.5882 29 6 5.6339 -0.3329 -2.8223 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.9989 3.1541 1.3075 36 1 0.5489 2.1253 1.3969 37 1 2.0698 1.5875 2.1492 38 1 3.8794 3.3417 0.8448 39 1 5.1471 2.8931 -0.3215 40 1 3.5609 3.4536 -0.9030 41 1 6.9742 0.8489 -0.6089 42 1 5.6064 0.5559 0.4958 43 1 5.7523 -1.8645 0.1020 44 1 7.3550 -1.2618 0.5902 45 1 8.0200 -1.1275 -1.8042 46 1 7.6395 -3.6679 -2.1514 47 1 9.7139 -2.6214 -1.4384 48 1 9.0491 -2.6134 0.2128 49 1 11.3262 -4.0543 0.1771 50 1 13.7295 -7.7459 1.1597 51 1 5.2790 -2.3873 -2.2721 52 1 6.5366 -2.1655 -3.5124 53 1 4.8008 -0.3384 -3.5252 54 1 6.4484 0.2685 -3.2260 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001203093151.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:50:59 Heat of formation + Delta-G solvation = -111.056785 kcal Electronic energy + Delta-G solvation = -30296.873192 eV Core-core repulsion = 26266.813812 eV Total energy + Delta-G solvation = -4030.059380 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.57410 -40.35378 -39.14533 -37.50102 -36.34721 -35.79811 -33.78534 -33.62764 -32.17646 -31.92748 -29.48914 -28.48698 -26.89164 -26.08510 -24.66571 -24.47011 -23.15435 -21.79802 -21.30167 -20.86544 -20.23560 -19.67372 -18.39310 -17.72515 -17.16284 -16.89716 -16.57045 -16.35607 -15.98189 -15.94084 -15.60591 -15.41379 -15.09166 -14.94967 -14.77486 -14.67045 -14.32677 -14.09085 -13.95582 -13.82148 -13.67350 -13.46756 -13.36457 -13.14334 -13.00287 -12.90785 -12.61277 -12.56211 -12.49131 -12.40807 -12.30648 -12.17940 -11.97449 -11.83650 -11.52900 -11.51159 -11.46826 -11.33818 -11.30319 -10.55159 -10.43004 -10.24698 -9.66166 -9.32301 -8.40800 -6.02158 1.30737 1.36989 1.45849 1.65230 1.96253 2.02454 2.23999 2.71530 3.15323 3.34091 3.49280 3.68090 3.80305 3.82078 3.92078 4.08176 4.12795 4.15402 4.22912 4.32098 4.35248 4.41685 4.43938 4.50600 4.54118 4.60936 4.63729 4.64658 4.71264 4.74993 4.78277 4.80983 4.85631 4.95155 4.99218 5.03766 5.11614 5.13829 5.16482 5.18677 5.24941 5.32644 5.37703 5.51249 5.53696 5.55810 5.59462 5.92041 6.09988 6.37644 6.43323 6.60270 6.88614 7.20788 7.40194 7.97410 8.76897 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.019528 B = 0.001968 C = 0.001956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.526347 B =14222.291540 C =14313.111692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.124 4.124 3 C -0.071 4.071 4 H 0.059 0.941 5 C -0.145 4.145 6 C -0.106 4.106 7 H 0.111 0.889 8 C -0.138 4.138 9 C 0.515 3.485 10 O -0.584 6.584 11 N -0.612 5.612 12 C 0.107 3.893 13 C -0.122 4.122 14 C 0.091 3.909 15 N -0.686 5.686 16 C 0.064 3.936 17 C 0.447 3.553 18 O -0.617 6.617 19 N -0.590 5.590 20 C -0.329 4.329 21 H 0.053 0.947 22 C -0.018 4.018 23 N -0.935 5.935 24 Si 0.967 3.033 25 H -0.256 1.256 26 H -0.277 1.277 27 H -0.229 1.229 28 C -0.128 4.128 29 C 0.117 3.883 30 H 0.049 0.951 31 H 0.070 0.930 32 H 0.045 0.955 33 H 0.064 0.936 34 H 0.038 0.962 35 H 0.070 0.930 36 H 0.061 0.939 37 H 0.064 0.936 38 H 0.092 0.908 39 H 0.068 0.932 40 H 0.050 0.950 41 H 0.094 0.906 42 H 0.109 0.891 43 H 0.053 0.947 44 H 0.087 0.913 45 H 0.066 0.934 46 H 0.343 0.657 47 H 0.078 0.922 48 H 0.117 0.883 49 H 0.390 0.610 50 H 0.279 0.721 51 H 0.053 0.947 52 H 0.081 0.919 53 H 0.074 0.926 54 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.264 29.712 0.930 33.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.162 4.162 3 C -0.090 4.090 4 H 0.078 0.922 5 C -0.202 4.202 6 C -0.127 4.127 7 H 0.129 0.871 8 C -0.195 4.195 9 C 0.306 3.694 10 O -0.464 6.464 11 N -0.344 5.344 12 C -0.015 4.015 13 C -0.161 4.161 14 C -0.018 4.018 15 N -0.318 5.318 16 C -0.068 4.068 17 C 0.235 3.765 18 O -0.502 6.502 19 N -0.232 5.232 20 C -0.459 4.459 21 H 0.071 0.929 22 C -0.216 4.216 23 N -0.576 5.576 24 Si 0.787 3.213 25 H -0.180 1.180 26 H -0.202 1.202 27 H -0.152 1.152 28 C -0.167 4.167 29 C -0.006 4.006 30 H 0.068 0.932 31 H 0.089 0.911 32 H 0.064 0.936 33 H 0.083 0.917 34 H 0.057 0.943 35 H 0.089 0.911 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.110 0.890 39 H 0.087 0.913 40 H 0.069 0.931 41 H 0.112 0.888 42 H 0.127 0.873 43 H 0.072 0.928 44 H 0.106 0.894 45 H 0.084 0.916 46 H 0.163 0.837 47 H 0.096 0.904 48 H 0.135 0.865 49 H 0.226 0.774 50 H 0.088 0.912 51 H 0.071 0.929 52 H 0.099 0.901 53 H 0.093 0.907 54 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -16.300 28.835 0.920 33.136 hybrid contribution 1.251 -0.474 -0.838 1.579 sum -15.049 28.362 0.082 32.107 Atomic orbital electron populations 1.21757 0.95228 1.01517 1.02006 1.21610 0.96826 0.96775 1.00948 1.20973 0.92576 0.96121 0.99337 0.92210 1.21913 1.01882 1.00903 0.95527 1.21512 0.97754 0.98717 0.94710 0.87120 1.21780 1.01467 0.92444 1.03840 1.21233 0.80540 0.77455 0.90222 1.90653 1.51578 1.60555 1.43611 1.48293 1.14761 1.58651 1.12710 1.22146 0.93723 0.96645 0.88996 1.22016 1.01216 0.95466 0.97436 1.21584 0.96412 0.88270 0.95527 1.60107 1.21891 1.14249 1.35590 1.21681 0.90505 0.91527 1.03077 1.21072 0.81647 0.92498 0.81301 1.90553 1.55948 1.48092 1.55578 1.42021 1.15044 1.06840 1.59286 1.18992 1.00570 0.83997 1.42298 0.92921 1.26174 0.98500 1.00544 0.96419 1.69812 1.20777 1.21604 1.45406 0.85334 0.77504 0.78252 0.80211 1.18014 1.20170 1.15192 1.22001 0.98719 0.96891 0.99077 1.21508 1.00201 0.93101 0.85767 0.93163 0.91083 0.93551 0.91738 0.94345 0.91129 0.92035 0.91727 0.88963 0.91293 0.93123 0.88762 0.87342 0.92774 0.89424 0.91574 0.83739 0.90430 0.86534 0.77380 0.91157 0.92857 0.90064 0.90728 0.89470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.34 9.67 71.98 0.70 -1.65 16 2 C -0.12 -2.21 5.18 30.60 0.16 -2.05 16 3 C -0.07 -1.05 1.60 -10.79 -0.02 -1.06 16 4 H 0.06 1.13 7.88 -2.38 -0.02 1.11 16 5 C -0.15 -1.35 8.60 71.98 0.62 -0.74 16 6 C -0.11 -1.39 1.52 -11.54 -0.02 -1.41 16 7 H 0.11 1.08 6.14 -2.39 -0.01 1.06 16 8 C -0.14 -1.24 8.64 71.98 0.62 -0.61 16 9 C 0.52 10.32 5.98 87.65 0.52 10.84 16 10 O -0.58 -16.61 14.36 -3.03 -0.04 -16.65 16 11 N -0.61 -10.19 2.97 -818.08 -2.43 -12.62 16 12 C 0.11 1.18 6.16 86.51 0.53 1.71 16 13 C -0.12 -1.98 5.60 30.82 0.17 -1.81 16 14 C 0.09 1.72 2.45 44.95 0.11 1.83 16 15 N -0.69 -19.08 5.93 -495.41 -2.94 -22.02 16 16 C 0.06 1.82 5.96 85.56 0.51 2.33 16 17 C 0.45 19.74 7.82 87.66 0.69 20.42 16 18 O -0.62 -34.21 15.78 -3.08 -0.05 -34.26 16 19 N -0.59 -27.24 5.09 -306.99 -1.56 -28.81 16 20 C -0.33 -19.19 10.16 84.04 0.85 -18.34 16 21 H 0.05 3.69 7.39 -2.91 -0.02 3.66 16 22 C -0.02 -0.99 5.50 84.93 0.47 -0.52 16 23 N -0.94 -56.24 13.96 21.66 0.30 -55.94 16 24 Si 0.97 37.87 27.74 68.60 1.90 39.78 16 25 H -0.26 -9.44 7.11 99.48 0.71 -8.74 16 26 H -0.28 -10.82 7.11 99.48 0.71 -10.11 16 27 H -0.23 -7.38 6.52 99.48 0.65 -6.73 16 28 C -0.13 -2.46 5.36 30.67 0.16 -2.30 16 29 C 0.12 2.06 6.44 86.36 0.56 2.61 16 30 H 0.05 0.80 8.14 -2.38 -0.02 0.78 16 31 H 0.07 0.88 6.57 -2.39 -0.02 0.86 16 32 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.04 0.93 6.28 -2.39 -0.01 0.91 16 35 H 0.07 0.49 6.57 -2.39 -0.02 0.47 16 36 H 0.06 0.57 6.56 -2.39 -0.02 0.55 16 37 H 0.06 0.51 8.14 -2.38 -0.02 0.49 16 38 H 0.09 0.46 6.76 -2.39 -0.02 0.45 16 39 H 0.07 0.51 7.96 -2.39 -0.02 0.49 16 40 H 0.05 0.59 8.14 -2.38 -0.02 0.57 16 41 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 42 H 0.11 0.80 5.41 -2.39 -0.01 0.78 16 43 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 44 H 0.09 1.26 7.42 -2.39 -0.02 1.25 16 45 H 0.07 1.01 7.80 -2.39 -0.02 0.99 16 46 H 0.34 10.55 8.03 -89.69 -0.72 9.83 16 47 H 0.08 1.75 8.05 -2.39 -0.02 1.73 16 48 H 0.12 2.67 7.41 -2.38 -0.02 2.65 16 49 H 0.39 14.64 5.76 -92.71 -0.53 14.11 16 50 H 0.28 15.30 8.31 -92.71 -0.77 14.53 16 51 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 52 H 0.08 1.45 8.10 -2.39 -0.02 1.43 16 53 H 0.07 1.62 7.00 -2.39 -0.02 1.60 16 54 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 Total: -1.00 -81.93 411.88 1.41 -80.52 By element: Atomic # 1 Polarization: 41.14 SS G_CDS: -0.41 Total: 40.73 kcal Atomic # 6 Polarization: 2.63 SS G_CDS: 6.64 Total: 9.27 kcal Atomic # 7 Polarization: -112.76 SS G_CDS: -6.63 Total: -119.39 kcal Atomic # 8 Polarization: -50.82 SS G_CDS: -0.09 Total: -50.91 kcal Atomic # 14 Polarization: 37.87 SS G_CDS: 1.90 Total: 39.78 kcal Total: -81.93 1.41 -80.52 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203093151.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.534 kcal (2) G-P(sol) polarization free energy of solvation -81.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds