Wall clock time and date at job start Sat Apr 11 2020 05:51:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53003 * 109.46622 * 2 1 4 4 H 1.08999 * 109.47082 * 55.00894 * 3 2 1 5 5 C 1.53000 * 109.47447 * 295.00160 * 3 2 1 6 6 C 1.53008 * 109.46536 * 175.00115 * 3 2 1 7 7 H 1.08999 * 109.46798 * 60.00606 * 6 3 2 8 8 C 1.52991 * 109.47367 * 300.00323 * 6 3 2 9 9 C 1.50701 * 109.46572 * 180.02562 * 6 3 2 10 10 O 1.21269 * 120.00409 * 27.44104 * 9 6 3 11 11 N 1.34776 * 119.99714 * 207.16467 * 9 6 3 12 12 C 1.46925 * 120.63440 * 175.15750 * 11 9 6 13 13 C 1.52756 * 109.00997 * 233.58556 * 12 11 9 14 14 C 1.53041 * 109.38630 * 305.58440 * 13 12 11 15 15 N 1.46894 * 109.46108 * 181.26350 * 14 13 12 16 16 C 1.46894 * 111.00272 * 84.93330 * 15 14 13 17 17 C 1.50703 * 109.47032 * 179.97438 * 16 15 14 18 18 O 1.21292 * 120.00389 * 359.97438 * 17 16 15 19 19 N 1.34778 * 119.99781 * 180.02562 * 17 16 15 20 20 C 1.37094 * 120.00028 * 180.02562 * 19 17 16 21 21 H 1.08004 * 120.00068 * 359.97438 * 20 19 17 22 22 C 1.38949 * 120.00461 * 180.02562 * 20 19 17 23 23 N 1.31412 * 119.99316 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 120.00389 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47482 * 89.99685 * 24 22 20 26 26 H 1.48501 * 109.46879 * 209.99731 * 24 22 20 27 27 H 1.48498 * 109.47120 * 329.99308 * 24 22 20 28 28 C 1.53043 * 109.53478 * 61.23990 * 14 13 12 29 29 C 1.46936 * 120.63027 * 355.43923 * 11 9 6 30 30 H 1.09002 * 109.47263 * 59.99359 * 1 2 3 31 31 H 1.08999 * 109.47100 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46821 * 299.99380 * 1 2 3 33 33 H 1.09000 * 109.46821 * 240.00620 * 2 1 3 34 34 H 1.08989 * 109.47395 * 120.00432 * 2 1 3 35 35 H 1.08992 * 109.47238 * 300.00405 * 5 3 2 36 36 H 1.08996 * 109.47060 * 60.00360 * 5 3 2 37 37 H 1.08999 * 109.46989 * 180.02562 * 5 3 2 38 38 H 1.09002 * 109.47456 * 306.28494 * 8 6 3 39 39 H 1.08997 * 109.47202 * 66.28377 * 8 6 3 40 40 H 1.08998 * 109.47412 * 186.28598 * 8 6 3 41 41 H 1.09004 * 109.57972 * 353.41983 * 12 11 9 42 42 H 1.08997 * 109.58850 * 113.83847 * 12 11 9 43 43 H 1.09006 * 109.56526 * 185.54585 * 13 12 11 44 44 H 1.09001 * 109.36042 * 65.50040 * 13 12 11 45 45 H 1.08999 * 109.45763 * 301.22115 * 14 13 12 46 46 H 1.00898 * 111.00021 * 320.97349 * 15 14 13 47 47 H 1.08996 * 109.47058 * 299.99493 * 16 15 14 48 48 H 1.08998 * 109.47332 * 60.00014 * 16 15 14 49 49 H 0.96994 * 120.00172 * 359.97438 * 19 17 16 50 50 H 0.97011 * 119.99705 * 180.02562 * 23 22 20 51 51 H 1.09000 * 109.49178 * 178.68429 * 28 14 13 52 52 H 1.08996 * 109.52421 * 58.60319 * 28 14 13 53 53 H 1.09002 * 109.58468 * 246.15672 * 29 11 9 54 54 H 1.08997 * 109.58551 * 6.43875 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9815 0.8419 5 6 1.6351 2.1267 -1.3073 6 6 3.5649 1.4444 0.1257 7 1 3.9994 0.9054 -0.7162 8 6 3.9697 0.7603 1.4329 9 6 4.0670 2.8653 0.1263 10 8 3.3539 3.7603 0.5276 11 7 5.3108 3.1406 -0.3139 12 6 5.7773 4.5298 -0.4192 13 6 6.2961 4.7746 -1.8349 14 6 7.3588 3.7270 -2.1747 15 7 7.8805 3.9791 -3.5245 16 6 8.9600 4.9749 -3.4942 17 6 9.4693 5.2064 -4.8936 18 8 8.9813 4.6011 -5.8245 19 7 10.4677 6.0854 -5.1105 20 6 10.9306 6.2964 -6.3836 21 1 10.4956 5.7580 -7.2126 22 6 11.9603 7.2022 -6.6072 23 7 12.4900 7.8569 -5.5984 24 14 12.5906 7.4902 -8.3419 25 1 11.8191 8.5912 -8.9725 26 1 14.0282 7.8590 -8.2913 27 1 12.4258 6.2494 -9.1409 28 6 6.7357 2.3301 -2.1215 29 6 6.2238 2.0573 -0.7037 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8901 33 1 1.8934 -0.5137 -0.8901 34 1 1.8934 -0.5138 0.8898 35 1 2.0697 1.5877 -2.1491 36 1 0.5489 2.1253 -1.3968 37 1 1.9988 3.1542 -1.3074 38 1 3.4467 1.2300 2.2660 39 1 3.7052 -0.2961 1.3872 40 1 5.0455 0.8596 1.5770 41 1 4.9507 5.2094 -0.2117 42 1 6.5816 4.7004 0.2964 43 1 6.7346 5.7707 -1.8959 44 1 5.4695 4.6967 -2.5412 45 1 8.1735 3.7890 -1.4533 46 1 7.1422 4.2650 -4.1500 47 1 8.5792 5.9112 -3.0863 48 1 9.7737 4.6097 -2.8677 49 1 10.8582 6.5692 -4.3661 50 1 13.2086 8.4896 -5.7546 51 1 7.4872 1.5864 -2.3864 52 1 5.9051 2.2747 -2.8251 53 1 7.0654 2.0221 -0.0118 54 1 5.6925 1.1059 -0.6815 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001203093153.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:51:05 Heat of formation + Delta-G solvation = -116.906691 kcal Electronic energy + Delta-G solvation = -30133.383338 eV Core-core repulsion = 26103.070287 eV Total energy + Delta-G solvation = -4030.313051 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.59623 -40.23883 -39.15802 -37.59567 -36.34728 -35.76786 -33.44234 -33.24968 -32.16474 -31.75459 -30.20078 -28.37791 -26.44512 -25.46927 -25.31045 -24.29259 -23.63407 -21.89286 -21.19294 -20.77098 -19.96062 -19.68296 -18.40670 -17.66409 -17.02719 -16.83783 -16.44002 -16.17813 -16.10133 -15.93242 -15.49610 -15.42496 -15.27897 -15.15990 -14.78463 -14.57339 -14.29298 -14.08089 -13.94043 -13.62453 -13.49810 -13.42925 -13.31308 -13.08918 -12.87203 -12.83222 -12.72768 -12.60236 -12.57297 -12.41927 -12.25034 -12.12428 -12.11671 -11.83556 -11.60814 -11.56341 -11.50577 -11.38383 -11.31899 -10.57046 -10.34352 -10.01896 -9.70594 -9.27934 -8.47118 -5.95829 1.37678 1.41657 1.54324 1.63548 2.00413 2.05117 2.28850 2.90292 3.20224 3.44281 3.53480 3.68613 3.73709 3.88477 3.93510 4.03810 4.12158 4.20811 4.27064 4.33903 4.35090 4.37292 4.45680 4.49679 4.57575 4.60258 4.61835 4.67205 4.72843 4.75032 4.77337 4.79631 4.87830 4.91611 4.97378 5.00429 5.10594 5.13518 5.16915 5.21483 5.26426 5.29760 5.35286 5.40657 5.49712 5.55820 5.57766 5.91158 6.12745 6.36525 6.43192 6.59812 7.12329 7.19045 7.56054 8.11432 8.70123 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.027323 B = 0.001783 C = 0.001750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.531199 B =15699.446089 C =15999.159260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.115 4.115 3 C -0.071 4.071 4 H 0.059 0.941 5 C -0.150 4.150 6 C -0.105 4.105 7 H 0.112 0.888 8 C -0.140 4.140 9 C 0.517 3.483 10 O -0.586 6.586 11 N -0.611 5.611 12 C 0.119 3.881 13 C -0.157 4.157 14 C 0.090 3.910 15 N -0.674 5.674 16 C 0.066 3.934 17 C 0.437 3.563 18 O -0.624 6.624 19 N -0.573 5.573 20 C -0.335 4.335 21 H 0.078 0.922 22 C -0.013 4.013 23 N -0.919 5.919 24 Si 0.993 3.007 25 H -0.272 1.272 26 H -0.270 1.270 27 H -0.273 1.273 28 C -0.117 4.117 29 C 0.107 3.893 30 H 0.051 0.949 31 H 0.063 0.937 32 H 0.048 0.952 33 H 0.071 0.929 34 H 0.079 0.921 35 H 0.060 0.940 36 H 0.062 0.938 37 H 0.031 0.969 38 H 0.050 0.950 39 H 0.093 0.907 40 H 0.068 0.932 41 H 0.071 0.929 42 H 0.082 0.918 43 H 0.074 0.926 44 H 0.055 0.945 45 H 0.091 0.909 46 H 0.341 0.659 47 H 0.064 0.936 48 H 0.106 0.894 49 H 0.396 0.604 50 H 0.278 0.722 51 H 0.090 0.910 52 H 0.057 0.943 53 H 0.090 0.910 54 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.865 -15.653 17.526 28.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.153 4.153 3 C -0.090 4.090 4 H 0.078 0.922 5 C -0.207 4.207 6 C -0.126 4.126 7 H 0.130 0.870 8 C -0.198 4.198 9 C 0.307 3.693 10 O -0.466 6.466 11 N -0.343 5.343 12 C -0.005 4.005 13 C -0.197 4.197 14 C -0.019 4.019 15 N -0.304 5.304 16 C -0.067 4.067 17 C 0.224 3.776 18 O -0.511 6.511 19 N -0.210 5.210 20 C -0.465 4.465 21 H 0.096 0.904 22 C -0.212 4.212 23 N -0.560 5.560 24 Si 0.816 3.184 25 H -0.197 1.197 26 H -0.195 1.195 27 H -0.198 1.198 28 C -0.156 4.156 29 C -0.015 4.015 30 H 0.070 0.930 31 H 0.082 0.918 32 H 0.068 0.932 33 H 0.090 0.910 34 H 0.097 0.903 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.050 0.950 38 H 0.069 0.931 39 H 0.112 0.888 40 H 0.087 0.913 41 H 0.089 0.911 42 H 0.100 0.900 43 H 0.093 0.907 44 H 0.073 0.927 45 H 0.109 0.891 46 H 0.160 0.840 47 H 0.082 0.918 48 H 0.124 0.876 49 H 0.230 0.770 50 H 0.087 0.913 51 H 0.108 0.892 52 H 0.076 0.924 53 H 0.108 0.892 54 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -16.940 -15.979 17.129 28.908 hybrid contribution 0.104 1.957 -0.594 2.048 sum -16.837 -14.022 16.534 27.449 Atomic orbital electron populations 1.21828 0.95841 1.02005 1.01600 1.21616 0.96024 0.94451 1.03178 1.20984 0.92609 0.97362 0.98070 0.92218 1.21893 1.01797 0.99564 0.97442 1.21497 0.97292 0.91499 1.02299 0.87018 1.21810 1.02041 1.01741 0.94167 1.21238 0.80431 0.92112 0.75559 1.90650 1.57212 1.49856 1.48871 1.48296 1.13806 1.07741 1.64464 1.21348 0.99699 0.83042 0.96378 1.22524 0.99435 1.00554 0.97176 1.21686 0.95819 0.94970 0.89448 1.60233 1.13515 1.46940 1.09745 1.21564 0.96403 0.95749 0.92945 1.20934 0.82539 0.82118 0.91992 1.90491 1.61646 1.52408 1.46545 1.41934 1.32255 1.37690 1.09151 1.19666 1.17180 1.23358 0.86251 0.90374 1.26031 0.96336 0.95539 1.03328 1.69673 1.26725 1.27156 1.32473 0.84931 0.77705 0.78522 0.77200 1.19712 1.19487 1.19805 1.21854 1.00797 0.96392 0.96572 1.22058 0.93801 0.90303 0.95346 0.92968 0.91772 0.93245 0.90988 0.90296 0.92134 0.91931 0.95006 0.93127 0.88825 0.91323 0.91061 0.89981 0.90712 0.92666 0.89066 0.84016 0.91822 0.87560 0.76965 0.91305 0.89184 0.92371 0.89151 0.86990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.63 9.67 71.98 0.70 -0.94 16 2 C -0.12 -1.15 5.19 30.60 0.16 -0.99 16 3 C -0.07 -1.07 1.62 -10.79 -0.02 -1.09 16 4 H 0.06 1.16 7.86 -2.39 -0.02 1.14 16 5 C -0.15 -2.64 8.67 71.98 0.62 -2.02 16 6 C -0.10 -1.42 1.46 -11.54 -0.02 -1.44 16 7 H 0.11 1.11 6.34 -2.39 -0.02 1.10 16 8 C -0.14 -1.35 8.47 71.98 0.61 -0.74 16 9 C 0.52 10.72 5.91 87.66 0.52 11.24 16 10 O -0.59 -17.15 14.62 -3.00 -0.04 -17.20 16 11 N -0.61 -10.82 2.98 -819.74 -2.44 -13.26 16 12 C 0.12 2.31 6.39 86.22 0.55 2.86 16 13 C -0.16 -3.22 5.32 30.53 0.16 -3.05 16 14 C 0.09 1.87 2.43 44.94 0.11 1.98 16 15 N -0.67 -20.00 5.87 -495.46 -2.91 -22.91 16 16 C 0.07 2.16 5.96 85.56 0.51 2.67 16 17 C 0.44 20.55 7.82 87.66 0.69 21.24 16 18 O -0.62 -34.49 15.78 -3.07 -0.05 -34.54 16 19 N -0.57 -29.24 5.29 -306.98 -1.62 -30.87 16 20 C -0.33 -19.03 9.68 84.04 0.81 -18.22 16 21 H 0.08 4.74 7.16 -2.91 -0.02 4.72 16 22 C -0.01 -0.67 5.50 84.93 0.47 -0.20 16 23 N -0.92 -49.40 13.05 21.66 0.28 -49.11 16 24 Si 0.99 42.88 29.55 68.60 2.03 44.91 16 25 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 26 H -0.27 -11.02 7.11 99.48 0.71 -10.32 16 27 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 28 C -0.12 -1.96 5.69 30.67 0.17 -1.79 16 29 C 0.11 1.29 6.00 86.36 0.52 1.81 16 30 H 0.05 0.60 6.56 -2.39 -0.02 0.58 16 31 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.08 0.60 6.32 -2.39 -0.02 0.59 16 35 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.06 1.02 6.56 -2.39 -0.02 1.00 16 37 H 0.03 0.74 6.55 -2.39 -0.02 0.72 16 38 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 39 H 0.09 0.51 6.67 -2.39 -0.02 0.49 16 40 H 0.07 0.56 7.75 -2.39 -0.02 0.54 16 41 H 0.07 1.69 7.04 -2.39 -0.02 1.67 16 42 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 43 H 0.07 1.56 7.42 -2.38 -0.02 1.54 16 44 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 45 H 0.09 1.70 7.80 -2.39 -0.02 1.68 16 46 H 0.34 11.15 8.18 -89.70 -0.73 10.42 16 47 H 0.06 1.86 7.41 -2.39 -0.02 1.84 16 48 H 0.11 3.10 8.05 -2.39 -0.02 3.08 16 49 H 0.40 19.14 7.90 -92.71 -0.73 18.41 16 50 H 0.28 13.96 8.31 -92.70 -0.77 13.19 16 51 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 52 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 53 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 54 H 0.11 0.86 5.26 -2.39 -0.01 0.85 16 Total: -1.00 -72.37 414.79 1.24 -71.13 By element: Atomic # 1 Polarization: 41.11 SS G_CDS: -0.56 Total: 40.55 kcal Atomic # 6 Polarization: 4.74 SS G_CDS: 6.56 Total: 11.31 kcal Atomic # 7 Polarization: -109.46 SS G_CDS: -6.69 Total: -116.15 kcal Atomic # 8 Polarization: -51.65 SS G_CDS: -0.09 Total: -51.74 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.91 kcal Total: -72.37 1.24 -71.13 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203093153.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.781 kcal (2) G-P(sol) polarization free energy of solvation -72.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds