Wall clock time and date at job start Sat Apr 11 2020 05:51:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47102 * 2 1 4 4 H 1.09005 * 109.47295 * 55.00403 * 3 2 1 5 5 C 1.53004 * 109.47320 * 295.00213 * 3 2 1 6 6 C 1.53000 * 109.46988 * 174.99930 * 3 2 1 7 7 H 1.08998 * 109.47047 * 60.00020 * 6 3 2 8 8 C 1.53005 * 109.47368 * 180.02562 * 6 3 2 9 9 C 1.50701 * 109.47251 * 300.00021 * 6 3 2 10 10 O 1.21276 * 120.00060 * 0.02562 * 9 6 3 11 11 N 1.34782 * 120.00072 * 179.97438 * 9 6 3 12 12 C 1.46493 * 119.99878 * 180.02562 * 11 9 6 13 13 C 1.53118 * 109.52284 * 155.00311 * 12 11 9 14 14 C 1.53036 * 109.28068 * 177.55567 * 13 12 11 15 15 N 1.46843 * 109.52229 * 300.82162 * 14 13 12 16 16 C 1.46902 * 110.99818 * 185.83572 * 15 14 13 17 17 C 1.50702 * 109.47027 * 169.99758 * 16 15 14 18 18 O 1.21293 * 120.00255 * 0.02562 * 17 16 15 19 19 N 1.34777 * 119.99928 * 179.72353 * 17 16 15 20 20 C 1.37101 * 120.00327 * 180.27606 * 19 17 16 21 21 H 1.08001 * 119.99426 * 0.02562 * 20 19 17 22 22 C 1.38942 * 120.00412 * 180.02562 * 20 19 17 23 23 N 1.31414 * 120.00005 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 120.00325 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.46989 * 0.02562 * 24 22 20 26 26 H 1.48503 * 109.46903 * 119.99798 * 24 22 20 27 27 H 1.48498 * 109.47416 * 240.00213 * 24 22 20 28 28 C 1.46843 * 111.20082 * 61.74351 * 15 14 13 29 29 C 1.53038 * 109.52070 * 298.25410 * 28 15 14 30 30 H 1.08999 * 109.46889 * 59.99397 * 1 2 3 31 31 H 1.08994 * 109.46989 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.46878 * 300.00029 * 1 2 3 33 33 H 1.08999 * 109.46878 * 239.99971 * 2 1 3 34 34 H 1.08999 * 109.46889 * 120.00603 * 2 1 3 35 35 H 1.09003 * 109.46800 * 299.99598 * 5 3 2 36 36 H 1.08993 * 109.47016 * 60.00008 * 5 3 2 37 37 H 1.09003 * 109.46707 * 180.02562 * 5 3 2 38 38 H 1.09003 * 109.46824 * 59.99633 * 8 6 3 39 39 H 1.08993 * 109.47450 * 180.02562 * 8 6 3 40 40 H 1.09004 * 109.46737 * 300.00350 * 8 6 3 41 41 H 0.97001 * 119.99258 * 0.02562 * 11 9 6 42 42 H 1.08996 * 109.52427 * 34.87452 * 12 11 9 43 43 H 1.08995 * 109.50555 * 57.61449 * 13 12 11 44 44 H 1.08995 * 109.50409 * 297.49990 * 13 12 11 45 45 H 1.08996 * 109.46465 * 180.80442 * 14 13 12 46 46 H 1.09004 * 109.45131 * 60.83038 * 14 13 12 47 47 H 1.09004 * 109.47131 * 50.00001 * 16 15 14 48 48 H 1.08994 * 109.47471 * 289.99751 * 16 15 14 49 49 H 0.97000 * 120.00317 * 0.28382 * 19 17 16 50 50 H 0.96996 * 120.00330 * 179.97438 * 23 22 20 51 51 H 1.08997 * 109.46379 * 58.26863 * 28 15 14 52 52 H 1.09000 * 109.46577 * 178.24622 * 28 15 14 53 53 H 1.09001 * 109.50668 * 299.24264 * 29 28 15 54 54 H 1.08995 * 109.50406 * 179.11983 * 29 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 0.8419 5 6 1.6352 2.1266 -1.3073 6 6 3.5649 1.4443 0.1257 7 1 3.9995 0.9052 -0.7161 8 6 4.0749 2.8868 0.1264 9 6 3.9635 0.7705 1.4134 10 8 3.1120 0.3316 2.1571 11 7 5.2665 0.6547 1.7381 12 6 5.6541 -0.0007 2.9896 13 6 7.0740 -0.5583 2.8569 14 6 7.4960 -1.1878 4.1864 15 7 7.4462 -0.1736 5.2473 16 6 7.9767 -0.7058 6.5096 17 6 8.1394 0.4185 7.4998 18 8 7.8423 1.5516 7.1851 19 7 8.6094 0.1641 8.7370 20 6 8.7521 1.1860 9.6398 21 1 8.4875 2.1949 9.3595 22 6 9.2372 0.9238 10.9151 23 7 9.5596 -0.3038 11.2560 24 14 9.4323 2.3163 12.1449 25 1 9.0035 3.5930 11.5191 26 1 8.5919 2.0439 13.3385 27 1 10.8559 2.4190 12.5547 28 6 6.0829 0.3422 5.4253 29 6 5.6188 1.0174 4.1328 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 2.0699 1.5876 -2.1492 36 1 0.5490 2.1253 -1.3969 37 1 1.9990 3.1541 -1.3074 38 1 3.6402 3.4255 0.9684 39 1 5.1612 2.8881 0.2155 40 1 3.7865 3.3745 -0.8048 41 1 5.9476 1.0054 1.1431 42 1 4.9617 -0.8148 3.2041 43 1 7.7600 0.2498 2.6030 44 1 7.0960 -1.3149 2.0728 45 1 8.5119 -1.5730 4.0996 46 1 6.8176 -2.0047 4.4328 47 1 8.9445 -1.1734 6.3285 48 1 7.2849 -1.4462 6.9110 49 1 8.8468 -0.7421 8.9889 50 1 9.8986 -0.4868 12.1462 51 1 5.4114 -0.4819 5.6659 52 1 6.0726 1.0682 6.2382 53 1 6.2819 1.8503 3.8988 54 1 4.6011 1.3864 4.2601 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001229775144.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:51:29 Heat of formation + Delta-G solvation = -115.831964 kcal Electronic energy + Delta-G solvation = -30205.226758 eV Core-core repulsion = 26174.960310 eV Total energy + Delta-G solvation = -4030.266447 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.42581 -40.53876 -39.22788 -37.52423 -36.18112 -35.71551 -33.75639 -33.26616 -32.19985 -31.82270 -29.51834 -28.56326 -26.79458 -26.30381 -24.43654 -24.22635 -23.18304 -21.46566 -21.19197 -20.98528 -20.38442 -19.87230 -18.21469 -17.69635 -17.41017 -16.72171 -16.46073 -16.38391 -16.05218 -16.01612 -15.71311 -15.44349 -15.35390 -15.00882 -14.59642 -14.51635 -14.33433 -14.18177 -13.77380 -13.58935 -13.50898 -13.45184 -13.19681 -13.04486 -12.91588 -12.77422 -12.59061 -12.44468 -12.41571 -12.36689 -12.26420 -12.19032 -12.11592 -11.87401 -11.60134 -11.49264 -11.44303 -11.42212 -11.27207 -10.48428 -10.25700 -10.01460 -9.92805 -9.21045 -8.46489 -5.94816 1.35859 1.40850 1.55018 1.69674 2.06166 2.21759 2.28281 2.76326 3.20237 3.38054 3.64295 3.71497 3.83718 3.88835 3.93774 4.08222 4.19335 4.22987 4.30152 4.36198 4.41734 4.44394 4.47611 4.52543 4.55750 4.58721 4.64328 4.64922 4.74709 4.76439 4.80770 4.90781 4.96930 4.98125 5.02744 5.09034 5.11913 5.12328 5.15786 5.21205 5.30064 5.33787 5.37396 5.41364 5.51492 5.58787 5.69068 5.88973 6.07482 6.24647 6.61398 6.63267 7.13742 7.34707 7.57450 8.13554 8.71188 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.021990 B = 0.001889 C = 0.001848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.978148 B =14815.920869 C =15146.901883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.132 4.132 3 C -0.071 4.071 4 H 0.050 0.950 5 C -0.145 4.145 6 C -0.100 4.100 7 H 0.120 0.880 8 C -0.145 4.145 9 C 0.510 3.490 10 O -0.576 6.576 11 N -0.713 5.713 12 C 0.152 3.848 13 C -0.109 4.109 14 C 0.054 3.946 15 N -0.529 5.529 16 C 0.057 3.943 17 C 0.441 3.559 18 O -0.614 6.614 19 N -0.575 5.575 20 C -0.330 4.330 21 H 0.078 0.922 22 C -0.014 4.014 23 N -0.921 5.921 24 Si 0.992 3.008 25 H -0.274 1.274 26 H -0.272 1.272 27 H -0.270 1.270 28 C 0.061 3.939 29 C -0.108 4.108 30 H 0.067 0.933 31 H 0.051 0.949 32 H 0.039 0.961 33 H 0.065 0.935 34 H 0.060 0.940 35 H 0.067 0.933 36 H 0.059 0.941 37 H 0.066 0.934 38 H 0.043 0.957 39 H 0.072 0.928 40 H 0.090 0.910 41 H 0.414 0.586 42 H 0.067 0.933 43 H 0.082 0.918 44 H 0.101 0.899 45 H 0.099 0.901 46 H 0.039 0.961 47 H 0.116 0.884 48 H 0.063 0.937 49 H 0.396 0.604 50 H 0.277 0.723 51 H 0.024 0.976 52 H 0.060 0.940 53 H 0.065 0.935 54 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.511 -2.031 -27.862 29.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.169 4.169 3 C -0.090 4.090 4 H 0.069 0.931 5 C -0.202 4.202 6 C -0.121 4.121 7 H 0.138 0.862 8 C -0.202 4.202 9 C 0.298 3.702 10 O -0.455 6.455 11 N -0.364 5.364 12 C 0.047 3.953 13 C -0.148 4.148 14 C -0.073 4.073 15 N -0.255 5.255 16 C -0.074 4.074 17 C 0.228 3.772 18 O -0.500 6.500 19 N -0.213 5.213 20 C -0.460 4.460 21 H 0.096 0.904 22 C -0.214 4.214 23 N -0.562 5.562 24 Si 0.816 3.184 25 H -0.199 1.199 26 H -0.197 1.197 27 H -0.195 1.195 28 C -0.068 4.068 29 C -0.147 4.147 30 H 0.085 0.915 31 H 0.070 0.930 32 H 0.058 0.942 33 H 0.083 0.917 34 H 0.078 0.922 35 H 0.086 0.914 36 H 0.078 0.922 37 H 0.085 0.915 38 H 0.062 0.938 39 H 0.091 0.909 40 H 0.109 0.891 41 H 0.251 0.749 42 H 0.086 0.914 43 H 0.101 0.899 44 H 0.119 0.881 45 H 0.117 0.883 46 H 0.057 0.943 47 H 0.134 0.866 48 H 0.081 0.919 49 H 0.230 0.770 50 H 0.086 0.914 51 H 0.042 0.958 52 H 0.079 0.921 53 H 0.084 0.916 54 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -9.935 -1.283 -27.527 29.293 hybrid contribution -0.092 -0.351 1.584 1.625 sum -10.027 -1.635 -25.943 27.861 Atomic orbital electron populations 1.21755 0.95820 1.01380 1.01526 1.21780 0.96308 0.96680 1.02140 1.20927 0.92665 0.96580 0.98819 0.93143 1.21923 1.01762 1.00776 0.95774 1.21421 0.97733 0.98253 0.94674 0.86169 1.21860 1.01779 0.93175 1.03375 1.21327 0.82099 0.78297 0.88462 1.90644 1.50827 1.50156 1.53912 1.46013 1.07731 1.60039 1.22665 1.20857 0.97004 0.94096 0.83366 1.21790 0.93931 1.01863 0.97170 1.22213 1.02634 0.92096 0.90389 1.61522 1.21942 1.36366 1.05635 1.21734 1.02441 0.93794 0.89442 1.20812 0.82206 0.90809 0.83352 1.90464 1.55561 1.25097 1.78847 1.41947 1.57844 1.10677 1.10845 1.19674 1.42268 0.90691 0.93341 0.90421 1.26026 0.96261 0.99916 0.99190 1.69677 1.44343 1.20166 1.22018 0.84881 0.78320 0.77642 0.77548 1.19892 1.19729 1.19484 1.22006 0.87823 0.98361 0.98598 1.21758 0.99869 0.98925 0.94159 0.91451 0.93022 0.94175 0.91680 0.92162 0.91406 0.92227 0.91498 0.93806 0.90887 0.89144 0.74879 0.91439 0.89912 0.88073 0.88262 0.94263 0.86575 0.91918 0.77039 0.91354 0.95775 0.92111 0.91601 0.93234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.42 9.67 71.98 0.70 -1.72 16 2 C -0.13 -2.34 5.14 30.60 0.16 -2.19 16 3 C -0.07 -1.11 1.61 -10.79 -0.02 -1.12 16 4 H 0.05 1.04 8.10 -2.38 -0.02 1.03 16 5 C -0.15 -1.47 8.60 71.98 0.62 -0.85 16 6 C -0.10 -1.34 2.32 -11.54 -0.03 -1.37 16 7 H 0.12 1.04 8.14 -2.39 -0.02 1.02 16 8 C -0.14 -1.55 8.74 71.98 0.63 -0.92 16 9 C 0.51 10.66 6.80 87.66 0.60 11.26 16 10 O -0.58 -17.26 13.33 -3.02 -0.04 -17.30 16 11 N -0.71 -12.52 4.97 -442.16 -2.20 -14.72 16 12 C 0.15 3.41 2.52 45.07 0.11 3.52 16 13 C -0.11 -1.94 5.57 30.65 0.17 -1.77 16 14 C 0.05 1.20 5.46 86.33 0.47 1.67 16 15 N -0.53 -17.07 4.40 -900.95 -3.96 -21.03 16 16 C 0.06 1.99 5.45 85.56 0.47 2.46 16 17 C 0.44 21.29 7.46 87.66 0.65 21.95 16 18 O -0.61 -34.30 13.90 -3.07 -0.04 -34.34 16 19 N -0.58 -29.95 5.29 -306.98 -1.62 -31.57 16 20 C -0.33 -19.00 9.68 84.04 0.81 -18.19 16 21 H 0.08 4.78 7.16 -2.91 -0.02 4.76 16 22 C -0.01 -0.78 5.50 84.92 0.47 -0.31 16 23 N -0.92 -50.20 13.05 21.66 0.28 -49.92 16 24 Si 0.99 43.59 29.55 68.60 2.03 45.62 16 25 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 26 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 27 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 28 C 0.06 2.12 5.10 86.33 0.44 2.56 16 29 C -0.11 -3.20 5.67 30.65 0.17 -3.03 16 30 H 0.07 0.87 6.56 -2.39 -0.02 0.85 16 31 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.06 1.47 5.41 -2.39 -0.01 1.46 16 35 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 36 H 0.06 0.61 6.56 -2.39 -0.02 0.60 16 37 H 0.07 0.56 6.43 -2.39 -0.02 0.54 16 38 H 0.04 0.64 8.14 -2.39 -0.02 0.63 16 39 H 0.07 0.61 7.56 -2.39 -0.02 0.59 16 40 H 0.09 0.63 6.43 -2.39 -0.02 0.62 16 41 H 0.41 4.62 8.02 -92.71 -0.74 3.87 16 42 H 0.07 1.78 7.58 -2.39 -0.02 1.76 16 43 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 44 H 0.10 1.24 8.14 -2.39 -0.02 1.23 16 45 H 0.10 1.84 8.01 -2.39 -0.02 1.82 16 46 H 0.04 0.84 8.14 -2.38 -0.02 0.82 16 47 H 0.12 3.45 7.99 -2.38 -0.02 3.43 16 48 H 0.06 2.02 8.12 -2.39 -0.02 2.00 16 49 H 0.40 19.53 7.90 -92.71 -0.73 18.80 16 50 H 0.28 14.10 8.31 -92.71 -0.77 13.33 16 51 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 52 H 0.06 2.68 5.78 -2.39 -0.01 2.66 16 53 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 54 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 Total: -1.00 -73.85 414.74 0.29 -73.56 By element: Atomic # 1 Polarization: 38.33 SS G_CDS: -0.58 Total: 37.75 kcal Atomic # 6 Polarization: 5.53 SS G_CDS: 6.42 Total: 11.96 kcal Atomic # 7 Polarization: -109.74 SS G_CDS: -7.50 Total: -117.24 kcal Atomic # 8 Polarization: -51.56 SS G_CDS: -0.08 Total: -51.64 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Total: -73.85 0.29 -73.56 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229775144.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.270 kcal (2) G-P(sol) polarization free energy of solvation -73.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds