Wall clock time and date at job start Sat Apr 11 2020 05:49:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.47288 * 2 1 4 4 H 1.08996 * 109.47224 * 305.37173 * 3 2 1 5 5 C 1.50698 * 109.46718 * 65.37257 * 3 2 1 6 6 H 1.07991 * 120.00223 * 84.34020 * 5 3 2 7 7 C 1.37875 * 119.99728 * 264.33204 * 5 3 2 8 8 N 1.31517 * 119.99919 * 164.15722 * 7 5 3 9 9 Si 1.86800 * 120.00182 * 344.15870 * 7 5 3 10 10 H 1.48502 * 109.46965 * 89.48607 * 9 7 5 11 11 H 1.48501 * 109.47426 * 209.48687 * 9 7 5 12 12 H 1.48503 * 109.47327 * 329.48776 * 9 7 5 13 13 N 1.46896 * 109.46893 * 185.36910 * 3 2 1 14 14 C 1.48597 * 111.00409 * 303.57803 * 13 3 2 15 15 C 1.54479 * 104.61440 * 158.81647 * 14 13 3 16 16 C 1.53848 * 105.00740 * 336.18308 * 15 14 13 17 17 C 1.48660 * 111.00219 * 59.06799 * 13 3 2 18 18 C 1.52590 * 110.11334 * 241.47176 * 16 15 14 19 19 C 1.53262 * 109.20406 * 181.56923 * 18 16 15 20 20 H 1.08992 * 109.55824 * 296.29415 * 19 18 16 21 21 N 1.46508 * 109.54978 * 175.99348 * 19 18 16 22 22 C 1.34781 * 119.99554 * 154.99931 * 21 19 18 23 23 O 1.21581 * 120.00376 * 4.91445 * 22 21 19 24 24 N 1.34778 * 119.99548 * 184.91103 * 22 21 19 25 25 C 1.46510 * 119.99838 * 184.89577 * 24 22 21 26 26 C 1.46493 * 120.00188 * 4.89305 * 24 22 21 27 27 C 1.53184 * 108.97659 * 56.14810 * 19 18 16 28 28 C 1.53083 * 109.24657 * 302.58715 * 27 19 18 29 29 O 1.42342 * 110.23218 * 119.00939 * 16 15 14 30 30 H 1.09001 * 109.46729 * 54.30470 * 1 2 3 31 31 H 1.08997 * 109.47222 * 174.30689 * 1 2 3 32 32 H 1.08998 * 109.46538 * 294.31253 * 1 2 3 33 33 H 1.09007 * 109.46966 * 240.00529 * 2 1 3 34 34 H 1.08996 * 109.47251 * 120.00739 * 2 1 3 35 35 H 0.97004 * 119.99726 * 179.97438 * 8 7 5 36 36 H 1.08992 * 110.40788 * 40.02591 * 14 13 3 37 37 H 1.09002 * 110.50196 * 277.65025 * 14 13 3 38 38 H 1.08997 * 110.35796 * 95.09902 * 15 14 13 39 39 H 1.09001 * 110.34883 * 217.27424 * 15 14 13 40 40 H 1.08996 * 110.42671 * 320.04318 * 17 13 3 41 41 H 1.09000 * 110.43060 * 82.41055 * 17 13 3 42 42 H 1.09000 * 109.51901 * 301.48810 * 18 16 15 43 43 H 1.09000 * 109.51310 * 61.59417 * 18 16 15 44 44 H 0.96992 * 120.00355 * 334.99710 * 21 19 18 45 45 H 1.08992 * 109.47122 * 89.99828 * 25 24 22 46 46 H 1.08997 * 109.46851 * 209.99915 * 25 24 22 47 47 H 1.09003 * 109.46612 * 329.99547 * 25 24 22 48 48 H 1.09004 * 109.47129 * 4.82879 * 26 24 22 49 49 H 1.09002 * 109.47256 * 124.83014 * 26 24 22 50 50 H 1.09000 * 109.47474 * 244.82841 * 26 24 22 51 51 H 1.09001 * 109.50624 * 62.51998 * 27 19 18 52 52 H 1.09002 * 109.50543 * 182.60796 * 27 19 18 53 53 H 1.09004 * 109.48130 * 178.01559 * 28 27 19 54 54 H 1.08999 * 109.48621 * 298.06713 * 28 27 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6004 1.9834 -0.8379 5 6 1.6493 2.1134 1.2916 6 1 2.2658 1.9940 2.1702 7 6 0.5047 2.8797 1.3515 8 7 -0.0083 3.2054 2.5179 9 14 -0.3176 3.4553 -0.2240 10 1 -1.3061 2.4391 -0.6662 11 1 -1.0103 4.7455 0.0220 12 1 0.7100 3.6387 -1.2802 13 7 3.5033 1.4444 -0.1296 14 6 4.1347 0.6422 0.9502 15 6 5.5331 0.2822 0.4014 16 6 5.3937 0.3636 -1.1286 17 6 3.9280 0.7692 -1.3841 18 6 5.6775 -0.9987 -1.7547 19 6 5.5715 -0.8848 -3.2794 20 1 4.5500 -0.6239 -3.5556 21 7 5.9359 -2.1643 -3.8931 22 6 5.4613 -2.4859 -5.1129 23 8 4.8046 -1.6789 -5.7419 24 7 5.7147 -3.7022 -5.6353 25 6 5.2918 -4.0147 -7.0028 26 6 6.4131 -4.7117 -4.8358 27 6 6.5290 0.2079 -3.7650 28 6 6.1852 1.5265 -3.0676 29 8 6.2749 1.3518 -1.6513 30 1 -0.3633 0.5996 -0.8346 31 1 -0.3633 -1.0226 -0.1019 32 1 -0.3632 0.4231 0.9365 33 1 1.8934 -0.5138 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 -0.8134 3.7449 2.5600 36 1 3.5563 -0.2619 1.1397 37 1 4.2247 1.2329 1.8618 38 1 6.2747 0.9993 0.7531 39 1 5.8104 -0.7278 0.7035 40 1 3.3161 -0.1141 -1.5666 41 1 3.8629 1.4570 -2.2272 42 1 6.6822 -1.3223 -1.4827 43 1 4.9503 -1.7249 -1.3915 44 1 6.5186 -2.7798 -3.4216 45 1 6.0882 -3.7511 -7.6986 46 1 5.0778 -5.0805 -7.0822 47 1 4.3945 -3.4449 -7.2446 48 1 6.5700 -4.3312 -3.8265 49 1 5.8123 -5.6202 -4.7923 50 1 7.3767 -4.9350 -5.2938 51 1 7.5544 -0.0740 -3.5257 52 1 6.4269 0.3282 -4.8435 53 1 6.8866 2.2987 -3.3839 54 1 5.1712 1.8250 -3.3337 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255170456.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:47 Heat of formation + Delta-G solvation = -71.659150 kcal Electronic energy + Delta-G solvation = -32091.983227 eV Core-core repulsion = 28063.632256 eV Total energy + Delta-G solvation = -4028.350970 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.88567 -40.96095 -38.97427 -36.69975 -36.31517 -35.66500 -33.85938 -32.61721 -32.16078 -30.24025 -29.18281 -28.78215 -27.38181 -26.36415 -24.91105 -24.77028 -23.65352 -22.34493 -21.29092 -20.67403 -20.15864 -19.09958 -18.81644 -17.75388 -17.42018 -17.02710 -16.85621 -16.60616 -16.09638 -15.76162 -15.54364 -15.46547 -15.26721 -15.04707 -14.90715 -14.68185 -14.47559 -14.30827 -14.10043 -13.72212 -13.44906 -13.37751 -13.32411 -13.15762 -12.99362 -12.91471 -12.70751 -12.61550 -12.40829 -12.28426 -12.21349 -12.06285 -11.92166 -11.88615 -11.58354 -11.54418 -11.43844 -11.09050 -10.97895 -10.52687 -10.39068 -10.26133 -9.53965 -8.96964 -8.28124 -6.23661 1.28558 1.34999 1.42681 1.60876 2.06702 2.33994 2.78716 2.90809 3.00644 3.42048 3.49517 3.72681 3.78649 3.95430 4.04538 4.07510 4.18257 4.21273 4.28236 4.34560 4.36198 4.40302 4.44495 4.50993 4.52947 4.58966 4.65209 4.71990 4.75904 4.78562 4.81582 4.85237 4.87414 4.92535 4.95166 5.00947 5.05546 5.09423 5.15856 5.18103 5.23000 5.25973 5.42672 5.45427 5.49492 5.51280 5.67187 5.86029 6.03682 6.29936 6.45178 6.62907 6.78846 6.91250 7.38354 7.50278 8.88293 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.014591 B = 0.003120 C = 0.002909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1918.478581 B = 8973.201451 C = 9622.767812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.140 4.140 3 C 0.171 3.829 4 H 0.030 0.970 5 C -0.491 4.491 6 H 0.042 0.958 7 C 0.034 3.966 8 N -0.939 5.939 9 Si 0.914 3.086 10 H -0.254 1.254 11 H -0.293 1.293 12 H -0.264 1.264 13 N -0.515 5.515 14 C 0.040 3.960 15 C -0.101 4.101 16 C 0.128 3.872 17 C -0.005 4.005 18 C -0.132 4.132 19 C 0.165 3.835 20 H 0.060 0.940 21 N -0.726 5.726 22 C 0.695 3.305 23 O -0.636 6.636 24 N -0.640 5.640 25 C 0.099 3.901 26 C 0.074 3.926 27 C -0.151 4.151 28 C 0.057 3.943 29 O -0.373 6.373 30 H 0.036 0.964 31 H 0.065 0.935 32 H 0.041 0.959 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.264 0.736 36 H 0.050 0.950 37 H 0.056 0.944 38 H 0.078 0.922 39 H 0.108 0.892 40 H 0.057 0.943 41 H 0.064 0.936 42 H 0.105 0.895 43 H 0.090 0.910 44 H 0.411 0.589 45 H 0.057 0.943 46 H 0.098 0.902 47 H 0.052 0.948 48 H 0.082 0.918 49 H 0.080 0.920 50 H 0.078 0.922 51 H 0.087 0.913 52 H 0.066 0.934 53 H 0.111 0.889 54 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.266 -19.590 -15.356 30.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.179 4.179 3 C 0.063 3.937 4 H 0.048 0.952 5 C -0.529 4.529 6 H 0.060 0.940 7 C -0.164 4.164 8 N -0.579 5.579 9 Si 0.740 3.260 10 H -0.179 1.179 11 H -0.220 1.220 12 H -0.189 1.189 13 N -0.237 5.237 14 C -0.088 4.088 15 C -0.139 4.139 16 C 0.087 3.913 17 C -0.133 4.133 18 C -0.171 4.171 19 C 0.059 3.941 20 H 0.079 0.921 21 N -0.384 5.384 22 C 0.396 3.604 23 O -0.518 6.518 24 N -0.378 5.378 25 C -0.044 4.044 26 C -0.068 4.068 27 C -0.190 4.190 28 C -0.020 4.020 29 O -0.292 6.292 30 H 0.055 0.945 31 H 0.084 0.916 32 H 0.060 0.940 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.073 0.927 36 H 0.068 0.932 37 H 0.074 0.926 38 H 0.097 0.903 39 H 0.126 0.874 40 H 0.074 0.926 41 H 0.083 0.917 42 H 0.124 0.876 43 H 0.108 0.892 44 H 0.251 0.749 45 H 0.075 0.925 46 H 0.117 0.883 47 H 0.071 0.929 48 H 0.100 0.900 49 H 0.098 0.902 50 H 0.097 0.903 51 H 0.106 0.894 52 H 0.084 0.916 53 H 0.129 0.871 54 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 16.935 -18.285 -15.581 29.392 hybrid contribution -1.236 -0.130 -0.396 1.305 sum 15.699 -18.415 -15.977 28.997 Atomic orbital electron populations 1.21678 0.96427 1.00765 1.00837 1.22162 0.96370 0.99364 1.00038 1.19872 0.85407 0.92899 0.95561 0.95243 1.20948 1.07003 1.29588 0.95343 0.94020 1.25520 0.97102 0.95925 0.97883 1.70065 1.22232 1.39633 1.25964 0.86315 0.79274 0.78368 0.82026 1.17884 1.21960 1.18915 1.65688 1.09367 1.47204 1.01483 1.22998 0.94292 0.96051 0.95464 1.22334 0.96683 1.03500 0.91367 1.21778 0.87539 0.87470 0.94524 1.23924 0.96676 0.98033 0.94653 1.22370 1.05110 0.96768 0.92831 1.20726 0.98316 0.82781 0.92263 0.92144 1.45177 1.53881 1.21302 1.17990 1.16173 0.79800 0.82649 0.81800 1.90901 1.46809 1.51470 1.62580 1.47070 1.61994 1.12006 1.16697 1.21596 1.00018 1.02301 0.80458 1.22011 0.97810 0.91455 0.95515 1.22477 1.00759 0.95225 1.00584 1.22671 1.01446 0.97339 0.80533 1.87914 1.60866 1.58644 1.21816 0.94509 0.91609 0.93953 0.92399 0.92352 0.92673 0.93234 0.92587 0.90318 0.87355 0.92554 0.91738 0.87616 0.89185 0.74889 0.92457 0.88329 0.92919 0.89974 0.90154 0.90348 0.89393 0.91552 0.87111 0.94121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.68 8.51 71.98 0.61 -5.07 16 2 C -0.14 -5.67 4.63 30.60 0.14 -5.53 16 3 C 0.17 8.05 1.91 44.17 0.08 8.13 16 4 H 0.03 1.49 4.98 -2.39 -0.01 1.47 16 5 C -0.49 -27.68 8.07 25.60 0.21 -27.47 16 6 H 0.04 2.59 7.00 -2.92 -0.02 2.57 16 7 C 0.03 1.98 4.53 84.65 0.38 2.36 16 8 N -0.94 -58.19 13.96 21.45 0.30 -57.89 16 9 Si 0.91 45.42 25.20 68.60 1.73 47.15 16 10 H -0.25 -11.77 6.34 99.48 0.63 -11.14 16 11 H -0.29 -14.52 7.11 99.48 0.71 -13.81 16 12 H -0.26 -13.00 6.53 99.48 0.65 -12.35 16 13 N -0.51 -21.72 5.40 -860.51 -4.65 -26.36 16 14 C 0.04 1.46 5.55 86.48 0.48 1.94 16 15 C -0.10 -2.73 6.44 31.38 0.20 -2.53 16 16 C 0.13 3.43 1.04 -10.23 -0.01 3.42 16 17 C 0.00 -0.16 4.55 86.37 0.39 0.23 16 18 C -0.13 -2.50 4.04 30.55 0.12 -2.38 16 19 C 0.16 3.55 2.30 45.14 0.10 3.65 16 20 H 0.06 1.72 7.05 -2.39 -0.02 1.70 16 21 N -0.73 -12.66 4.94 -457.09 -2.26 -14.92 16 22 C 0.69 15.98 8.24 179.05 1.47 17.46 16 23 O -0.64 -21.07 15.61 -3.97 -0.06 -21.14 16 24 N -0.64 -9.90 3.27 -890.18 -2.91 -12.81 16 25 C 0.10 1.33 10.52 127.77 1.34 2.68 16 26 C 0.07 0.45 10.61 127.77 1.36 1.80 16 27 C -0.15 -3.22 5.70 30.68 0.18 -3.04 16 28 C 0.06 1.41 6.59 72.01 0.47 1.88 16 29 O -0.37 -10.71 10.17 -148.98 -1.52 -12.23 16 30 H 0.04 1.50 6.24 -2.39 -0.01 1.48 16 31 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 32 H 0.04 1.97 6.87 -2.39 -0.02 1.96 16 33 H 0.06 2.06 5.79 -2.38 -0.01 2.05 16 34 H 0.06 2.35 6.26 -2.39 -0.01 2.34 16 35 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 36 H 0.05 1.76 5.59 -2.39 -0.01 1.75 16 37 H 0.06 2.32 7.44 -2.39 -0.02 2.30 16 38 H 0.08 2.22 7.97 -2.39 -0.02 2.20 16 39 H 0.11 2.12 7.69 -2.39 -0.02 2.10 16 40 H 0.06 1.85 5.16 -2.39 -0.01 1.84 16 41 H 0.06 2.35 5.96 -2.39 -0.01 2.33 16 42 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 43 H 0.09 1.58 8.05 -2.39 -0.02 1.56 16 44 H 0.41 4.21 6.10 -92.71 -0.57 3.65 16 45 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 46 H 0.10 0.69 8.07 -2.39 -0.02 0.68 16 47 H 0.05 1.00 7.36 -2.39 -0.02 0.98 16 48 H 0.08 0.31 5.59 -2.39 -0.01 0.29 16 49 H 0.08 0.30 8.14 -2.39 -0.02 0.28 16 50 H 0.08 0.24 8.14 -2.39 -0.02 0.22 16 51 H 0.09 1.56 8.14 -2.39 -0.02 1.55 16 52 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 53 H 0.11 2.33 8.14 -2.39 -0.02 2.31 16 54 H 0.04 1.14 6.17 -2.39 -0.01 1.13 16 Total: -1.00 -77.05 390.56 -1.62 -78.67 By element: Atomic # 1 Polarization: 21.77 SS G_CDS: 0.21 Total: 21.98 kcal Atomic # 6 Polarization: -10.00 SS G_CDS: 7.55 Total: -2.46 kcal Atomic # 7 Polarization: -102.46 SS G_CDS: -9.52 Total: -111.98 kcal Atomic # 8 Polarization: -31.78 SS G_CDS: -1.58 Total: -33.36 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 1.73 Total: 47.15 kcal Total: -77.05 -1.62 -78.67 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255170456.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.011 kcal (2) G-P(sol) polarization free energy of solvation -77.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds