Wall clock time and date at job start Sat Apr 11 2020 05:50:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47418 * 2 1 4 4 H 1.09008 * 109.47240 * 54.99863 * 3 2 1 5 5 C 1.53007 * 109.46808 * 295.00069 * 3 2 1 6 6 C 1.50691 * 109.47390 * 174.99797 * 3 2 1 7 7 O 1.21288 * 120.00152 * 12.40886 * 6 3 2 8 8 N 1.34780 * 120.00568 * 192.40640 * 6 3 2 9 9 C 1.45344 * 120.34764 * 5.39739 * 8 6 3 10 10 C 1.53051 * 108.62339 * 223.25249 * 9 8 6 11 11 C 1.52878 * 109.24304 * 77.97703 * 10 9 8 12 12 C 1.53971 * 109.71700 * 287.11912 * 11 10 9 13 13 C 1.52446 * 110.73010 * 315.65085 * 12 11 10 14 14 C 1.53803 * 109.41911 * 113.72724 * 13 12 11 15 15 H 1.09000 * 109.52331 * 42.03412 * 14 13 12 16 16 N 1.46903 * 109.52066 * 162.21910 * 14 13 12 17 17 C 1.46900 * 111.00265 * 274.68767 * 16 14 13 18 18 C 1.50696 * 109.47430 * 180.02562 * 17 16 14 19 19 O 1.21295 * 119.99921 * 359.97438 * 18 17 16 20 20 N 1.34776 * 120.00209 * 179.97438 * 18 17 16 21 21 C 1.37102 * 119.99946 * 179.97438 * 20 18 17 22 22 H 1.07995 * 119.99753 * 0.02562 * 21 20 18 23 23 C 1.38952 * 119.99582 * 180.02562 * 21 20 18 24 24 N 1.31411 * 119.99494 * 180.02562 * 23 21 20 25 25 Si 1.86795 * 120.00319 * 359.97438 * 23 21 20 26 26 H 1.48496 * 109.47077 * 90.00324 * 25 23 21 27 27 H 1.48503 * 109.47303 * 210.00446 * 25 23 21 28 28 H 1.48504 * 109.47246 * 330.00299 * 25 23 21 29 29 C 1.46954 * 120.35935 * 185.67133 * 8 6 3 30 30 H 1.08996 * 109.47042 * 300.00231 * 1 2 3 31 31 H 1.08995 * 109.46940 * 59.99696 * 1 2 3 32 32 H 1.08995 * 109.47533 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.46753 * 120.00214 * 2 1 3 34 34 H 1.08996 * 109.47042 * 239.99769 * 2 1 3 35 35 H 1.08999 * 109.47233 * 52.96114 * 5 3 2 36 36 H 1.09006 * 109.46465 * 172.96298 * 5 3 2 37 37 H 1.08993 * 109.46689 * 292.95961 * 5 3 2 38 38 H 1.09001 * 109.67500 * 343.07602 * 9 8 6 39 39 H 1.09000 * 109.67524 * 103.61601 * 9 8 6 40 40 H 1.08996 * 109.55725 * 318.05329 * 10 9 8 41 41 H 1.08999 * 109.58522 * 197.92188 * 10 9 8 42 42 H 1.09006 * 109.43129 * 167.04916 * 11 10 9 43 43 H 1.08997 * 109.43329 * 47.19673 * 11 10 9 44 44 H 1.08994 * 109.22828 * 195.32450 * 12 11 10 45 45 H 1.08992 * 109.22187 * 75.97017 * 12 11 10 46 46 H 1.08998 * 109.48328 * 353.74449 * 13 12 11 47 47 H 1.08998 * 109.48082 * 233.70988 * 13 12 11 48 48 H 1.00903 * 111.00346 * 38.64140 * 16 14 13 49 49 H 1.09009 * 109.46595 * 300.00048 * 17 16 14 50 50 H 1.08997 * 109.47289 * 59.99756 * 17 16 14 51 51 H 0.96998 * 119.99864 * 0.02562 * 20 18 17 52 52 H 0.97002 * 119.99713 * 179.97438 * 24 23 21 53 53 H 1.08999 * 109.53786 * 188.25822 * 29 8 6 54 54 H 1.09002 * 109.53566 * 308.49631 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9815 0.8419 5 6 1.6353 2.1265 -1.3074 6 6 3.5419 1.4442 0.1239 7 8 4.1636 0.4130 -0.0213 8 7 4.1944 2.5917 0.3959 9 6 3.4524 3.8072 0.6867 10 6 4.1094 4.9712 -0.0589 11 6 3.6976 4.9235 -1.5304 12 6 4.4198 3.7602 -2.2345 13 6 5.8909 3.7186 -1.8369 14 6 6.1664 2.4388 -1.0295 15 1 5.6469 1.5986 -1.4902 16 7 7.6110 2.1728 -1.0089 17 6 8.0255 1.4242 -2.2030 18 6 9.5098 1.1701 -2.1464 19 8 10.1587 1.5733 -1.2042 20 7 10.1164 0.4947 -3.1426 21 6 11.4669 0.2639 -3.0913 22 1 12.0445 0.6230 -2.2524 23 6 12.0922 -0.4319 -4.1187 24 7 13.3866 -0.6535 -4.0693 25 14 11.0929 -1.0535 -5.5693 26 1 11.0590 -0.0138 -6.6289 27 1 11.7172 -2.2888 -6.1076 28 1 9.7078 -1.3523 -5.1245 29 6 5.6635 2.6288 0.3959 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5139 0.8900 34 1 1.8933 -0.5139 -0.8899 35 1 0.5615 2.0156 -1.4582 36 1 1.8877 3.1857 -1.2565 37 1 2.1685 1.6655 -2.1388 38 1 2.4202 3.6953 0.3548 39 1 3.4746 4.0031 1.7588 40 1 5.1935 4.8882 0.0180 41 1 3.7852 5.9152 0.3790 42 1 3.9674 5.8629 -2.0130 43 1 2.6198 4.7769 -1.6008 44 1 4.3433 3.8909 -3.3139 45 1 3.9453 2.8203 -1.9530 46 1 6.1276 4.5908 -1.2275 47 1 6.5102 3.7228 -2.7338 48 1 8.1354 3.0302 -0.9196 49 1 7.4953 0.4724 -2.2373 50 1 7.7896 2.0039 -3.0953 51 1 9.5976 0.1726 -3.8962 52 1 13.8231 -1.1396 -4.7863 53 1 6.0038 3.5915 0.7772 54 1 6.0483 1.8284 1.0279 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001264112675.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:50:06 Heat of formation + Delta-G solvation = -94.515082 kcal Electronic energy + Delta-G solvation = -31571.888561 eV Core-core repulsion = 27542.546483 eV Total energy + Delta-G solvation = -4029.342078 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.89093 -40.37416 -39.07968 -37.05592 -36.36131 -35.93905 -34.99404 -33.79623 -32.53775 -30.98574 -29.40884 -27.92821 -27.30065 -26.22899 -25.45969 -23.99537 -22.71725 -21.87785 -21.36610 -20.92450 -20.35609 -19.41442 -18.29927 -17.99515 -17.29910 -17.09538 -16.66352 -16.42985 -16.19010 -16.17253 -15.64962 -15.28709 -15.11523 -15.02684 -14.70062 -14.49528 -14.36238 -14.26071 -14.12650 -13.96923 -13.67724 -13.36230 -13.21220 -13.08888 -12.96889 -12.75258 -12.69697 -12.61421 -12.45910 -12.32097 -12.05311 -12.01750 -11.87359 -11.68213 -11.65737 -11.58762 -11.55093 -11.48053 -11.16417 -10.56555 -10.50941 -10.28721 -9.62593 -9.22889 -8.44647 -6.05435 1.27761 1.31401 1.41001 1.66050 1.89233 1.99273 2.19546 2.71470 3.11183 3.37223 3.53753 3.70750 3.82285 3.91179 3.95198 4.00462 4.07316 4.10321 4.12840 4.27685 4.30388 4.38698 4.42139 4.45807 4.51104 4.53098 4.61595 4.65717 4.69703 4.73241 4.80903 4.82599 4.92957 5.00081 5.06563 5.08079 5.12747 5.14307 5.21887 5.23556 5.31963 5.35265 5.46224 5.48428 5.51492 5.57072 5.63584 5.87372 5.99930 6.37207 6.53002 6.55734 6.83370 7.25434 7.34660 7.90062 8.72938 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.014573 B = 0.002644 C = 0.002462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1920.912200 B =10588.058120 C =11371.145697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.107 4.107 3 C -0.103 4.103 4 H 0.119 0.881 5 C -0.150 4.150 6 C 0.506 3.494 7 O -0.585 6.585 8 N -0.598 5.598 9 C 0.095 3.905 10 C -0.149 4.149 11 C -0.113 4.113 12 C -0.122 4.122 13 C -0.149 4.149 14 C 0.082 3.918 15 H 0.064 0.936 16 N -0.678 5.678 17 C 0.068 3.932 18 C 0.451 3.549 19 O -0.610 6.610 20 N -0.591 5.591 21 C -0.329 4.329 22 H 0.057 0.943 23 C -0.013 4.013 24 N -0.932 5.932 25 Si 0.963 3.037 26 H -0.253 1.253 27 H -0.272 1.272 28 H -0.238 1.238 29 C 0.132 3.868 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.054 0.946 33 H 0.047 0.953 34 H 0.048 0.952 35 H 0.091 0.909 36 H 0.083 0.917 37 H 0.043 0.957 38 H 0.108 0.892 39 H 0.078 0.922 40 H 0.073 0.927 41 H 0.097 0.903 42 H 0.068 0.932 43 H 0.081 0.919 44 H 0.057 0.943 45 H 0.059 0.941 46 H 0.087 0.913 47 H 0.051 0.949 48 H 0.349 0.651 49 H 0.095 0.905 50 H 0.075 0.925 51 H 0.388 0.612 52 H 0.280 0.720 53 H 0.103 0.897 54 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -35.006 13.093 3.957 37.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.145 4.145 3 C -0.125 4.125 4 H 0.136 0.864 5 C -0.207 4.207 6 C 0.296 3.704 7 O -0.464 6.464 8 N -0.331 5.331 9 C -0.027 4.027 10 C -0.186 4.186 11 C -0.150 4.150 12 C -0.160 4.160 13 C -0.188 4.188 14 C -0.029 4.029 15 H 0.083 0.917 16 N -0.310 5.310 17 C -0.064 4.064 18 C 0.238 3.762 19 O -0.495 6.495 20 N -0.232 5.232 21 C -0.458 4.458 22 H 0.075 0.925 23 C -0.212 4.212 24 N -0.572 5.572 25 Si 0.783 3.217 26 H -0.177 1.177 27 H -0.197 1.197 28 H -0.162 1.162 29 C 0.008 3.992 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.074 0.926 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.110 0.890 36 H 0.102 0.898 37 H 0.062 0.938 38 H 0.126 0.874 39 H 0.096 0.904 40 H 0.091 0.909 41 H 0.116 0.884 42 H 0.087 0.913 43 H 0.100 0.900 44 H 0.075 0.925 45 H 0.078 0.922 46 H 0.105 0.895 47 H 0.070 0.930 48 H 0.168 0.832 49 H 0.113 0.887 50 H 0.093 0.907 51 H 0.224 0.776 52 H 0.090 0.910 53 H 0.121 0.879 54 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -34.106 12.186 4.841 36.539 hybrid contribution 0.821 -0.303 -1.401 1.651 sum -33.284 11.883 3.440 35.509 Atomic orbital electron populations 1.21809 0.93197 1.02335 1.03044 1.21320 0.97187 0.94496 1.01522 1.21395 0.89406 0.99294 1.02361 0.86356 1.22091 1.03392 1.01103 0.94069 1.21403 0.91454 0.82454 0.75095 1.90729 1.70465 1.33604 1.51637 1.47847 1.05933 1.10244 1.69044 1.21981 0.97147 0.82901 1.00663 1.22257 1.01934 0.98688 0.95719 1.21794 1.00535 0.97756 0.94956 1.21746 0.94155 1.00094 0.99988 1.22508 0.98145 0.98183 0.99930 1.22025 0.86889 0.97196 0.96763 0.91730 1.59951 1.04662 1.27084 1.39286 1.21537 0.90685 1.00531 0.93695 1.20828 0.90590 0.81737 0.82999 1.90531 1.67752 1.55530 1.35648 1.42040 1.07788 1.51770 1.21612 1.19020 0.83287 1.35578 1.07953 0.92466 1.26088 0.96987 0.96685 1.01436 1.69797 1.10887 1.41332 1.35190 0.85387 0.79331 0.79069 0.77898 1.17736 1.19708 1.16213 1.21215 0.79625 1.02695 0.95661 0.91381 0.91079 0.92642 0.93455 0.93342 0.88983 0.89812 0.93759 0.87359 0.90358 0.90915 0.88434 0.91320 0.90033 0.92455 0.92243 0.89515 0.92990 0.83185 0.88696 0.90680 0.77622 0.91041 0.87852 0.93379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.68 71.98 0.70 -0.73 16 2 C -0.11 -1.74 4.71 30.59 0.14 -1.60 16 3 C -0.10 -1.39 1.86 -11.54 -0.02 -1.41 16 4 H 0.12 0.96 7.20 -2.38 -0.02 0.94 16 5 C -0.15 -1.40 7.63 71.98 0.55 -0.85 16 6 C 0.51 11.14 5.43 87.65 0.48 11.61 16 7 O -0.58 -19.42 15.04 -3.06 -0.05 -19.46 16 8 N -0.60 -10.50 1.69 -824.71 -1.40 -11.89 16 9 C 0.09 0.82 5.48 86.61 0.47 1.30 16 10 C -0.15 -1.14 5.45 30.57 0.17 -0.98 16 11 C -0.11 -0.95 5.34 30.88 0.16 -0.78 16 12 C -0.12 -1.77 5.26 30.74 0.16 -1.61 16 13 C -0.15 -2.81 4.81 30.68 0.15 -2.66 16 14 C 0.08 2.09 2.09 44.97 0.09 2.18 16 15 H 0.06 1.96 6.05 -2.39 -0.01 1.95 16 16 N -0.68 -22.44 5.87 -495.30 -2.91 -25.35 16 17 C 0.07 2.42 5.94 85.56 0.51 2.93 16 18 C 0.45 21.91 7.82 87.66 0.69 22.59 16 19 O -0.61 -35.47 15.78 -3.08 -0.05 -35.52 16 20 N -0.59 -29.68 5.09 -306.98 -1.56 -31.25 16 21 C -0.33 -20.04 10.16 84.04 0.85 -19.19 16 22 H 0.06 4.11 7.39 -2.91 -0.02 4.09 16 23 C -0.01 -0.75 5.50 84.93 0.47 -0.28 16 24 N -0.93 -57.43 13.96 21.66 0.30 -57.12 16 25 Si 0.96 40.53 27.74 68.60 1.90 42.43 16 26 H -0.25 -9.95 7.11 99.48 0.71 -9.24 16 27 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 28 H -0.24 -8.80 6.52 99.48 0.65 -8.15 16 29 C 0.13 3.02 4.78 86.07 0.41 3.43 16 30 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.07 0.51 6.42 -2.39 -0.02 0.49 16 32 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 33 H 0.05 0.94 8.13 -2.38 -0.02 0.93 16 34 H 0.05 0.99 8.11 -2.39 -0.02 0.98 16 35 H 0.09 0.50 6.26 -2.39 -0.01 0.49 16 36 H 0.08 0.52 3.34 -2.38 -0.01 0.51 16 37 H 0.04 0.60 7.61 -2.39 -0.02 0.59 16 38 H 0.11 0.51 4.13 -2.39 -0.01 0.50 16 39 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 40 H 0.07 0.80 3.35 -2.39 -0.01 0.79 16 41 H 0.10 0.37 8.14 -2.39 -0.02 0.35 16 42 H 0.07 0.54 8.14 -2.38 -0.02 0.52 16 43 H 0.08 0.43 6.01 -2.39 -0.01 0.41 16 44 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 45 H 0.06 1.01 3.32 -2.39 -0.01 1.00 16 46 H 0.09 1.41 5.47 -2.39 -0.01 1.40 16 47 H 0.05 1.09 7.28 -2.39 -0.02 1.07 16 48 H 0.35 11.50 8.18 -89.69 -0.73 10.77 16 49 H 0.09 3.28 8.06 -2.38 -0.02 3.26 16 50 H 0.08 2.22 7.35 -2.39 -0.02 2.20 16 51 H 0.39 16.49 5.76 -92.71 -0.53 15.95 16 52 H 0.28 15.73 8.31 -92.71 -0.77 14.96 16 53 H 0.10 1.89 6.07 -2.39 -0.01 1.88 16 54 H 0.05 1.46 8.03 -2.39 -0.02 1.45 16 Total: -1.00 -84.20 388.52 1.84 -82.36 By element: Atomic # 1 Polarization: 42.23 SS G_CDS: -0.38 Total: 41.85 kcal Atomic # 6 Polarization: 7.98 SS G_CDS: 5.98 Total: 13.96 kcal Atomic # 7 Polarization: -120.05 SS G_CDS: -5.57 Total: -125.61 kcal Atomic # 8 Polarization: -54.89 SS G_CDS: -0.09 Total: -54.99 kcal Atomic # 14 Polarization: 40.53 SS G_CDS: 1.90 Total: 42.43 kcal Total: -84.20 1.84 -82.36 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264112675.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.156 kcal (2) G-P(sol) polarization free energy of solvation -84.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds