Wall clock time and date at job start Sat Apr 11 2020 05:50:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52992 * 109.46998 * 2 1 4 4 H 1.09003 * 109.47702 * 304.99675 * 3 2 1 5 5 C 1.53004 * 109.47095 * 65.00216 * 3 2 1 6 6 C 1.50698 * 109.47003 * 184.99663 * 3 2 1 7 7 O 1.21284 * 120.00320 * 343.53429 * 6 3 2 8 8 N 1.34773 * 120.00258 * 163.53158 * 6 3 2 9 9 C 1.46958 * 120.36564 * 174.77476 * 8 6 3 10 10 C 1.52349 * 109.06574 * 68.33152 * 9 8 6 11 11 C 1.53796 * 109.16117 * 72.68204 * 10 9 8 12 12 C 1.52455 * 109.43604 * 282.15902 * 11 10 9 13 13 C 1.53960 * 110.71279 * 113.72998 * 12 11 10 14 14 C 1.52871 * 109.73062 * 315.63288 * 13 12 11 15 15 H 1.09000 * 109.48372 * 47.10368 * 14 13 12 16 16 N 1.46901 * 109.48994 * 167.16468 * 14 13 12 17 17 C 1.46907 * 110.99481 * 274.90390 * 16 14 13 18 18 C 1.50700 * 109.46500 * 179.97438 * 17 16 14 19 19 O 1.21286 * 120.00349 * 0.02562 * 18 17 16 20 20 N 1.34776 * 119.99533 * 179.97438 * 18 17 16 21 21 C 1.37101 * 120.00140 * 180.02562 * 20 18 17 22 22 H 1.08004 * 119.99467 * 0.02562 * 21 20 18 23 23 C 1.38950 * 120.00498 * 180.02562 * 21 20 18 24 24 N 1.31404 * 120.00314 * 179.97438 * 23 21 20 25 25 Si 1.86804 * 119.99635 * 359.97438 * 23 21 20 26 26 H 1.48501 * 109.47009 * 90.00428 * 25 23 21 27 27 H 1.48500 * 109.46990 * 209.99837 * 25 23 21 28 28 H 1.48498 * 109.46933 * 329.99861 * 25 23 21 29 29 C 1.45327 * 120.35888 * 354.75388 * 8 6 3 30 30 H 1.08996 * 109.47158 * 179.97438 * 1 2 3 31 31 H 1.08992 * 109.47147 * 300.00108 * 1 2 3 32 32 H 1.09001 * 109.46658 * 60.00182 * 1 2 3 33 33 H 1.08997 * 109.46733 * 240.00051 * 2 1 3 34 34 H 1.08998 * 109.46583 * 120.00586 * 2 1 3 35 35 H 1.09000 * 109.47013 * 293.42868 * 5 3 2 36 36 H 1.08995 * 109.47606 * 53.43118 * 5 3 2 37 37 H 1.09003 * 109.46923 * 173.43948 * 5 3 2 38 38 H 1.09000 * 109.54235 * 188.20181 * 9 8 6 39 39 H 1.09000 * 109.53969 * 308.45375 * 9 8 6 40 40 H 1.08999 * 109.52443 * 192.58762 * 10 9 8 41 41 H 1.09004 * 109.52047 * 312.77431 * 10 9 8 42 42 H 1.09002 * 109.47392 * 42.15136 * 11 10 9 43 43 H 1.08997 * 109.47480 * 162.17242 * 11 10 9 44 44 H 1.08997 * 109.22672 * 234.04626 * 12 11 10 45 45 H 1.09002 * 109.22868 * 353.45178 * 12 11 10 46 46 H 1.09000 * 109.43148 * 75.71127 * 13 12 11 47 47 H 1.09000 * 109.42705 * 195.60711 * 13 12 11 48 48 H 1.00891 * 110.99908 * 38.85189 * 16 14 13 49 49 H 1.08999 * 109.47086 * 299.99892 * 17 16 14 50 50 H 1.08994 * 109.47387 * 60.00109 * 17 16 14 51 51 H 0.96995 * 120.00560 * 0.02562 * 20 18 17 52 52 H 0.97001 * 120.00558 * 179.97438 * 24 23 21 53 53 H 1.08997 * 109.67890 * 343.10160 * 29 8 6 54 54 H 1.08997 * 109.67399 * 103.64247 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 1.6353 2.1265 1.3074 6 6 3.5419 1.4442 -0.1237 7 8 4.1696 0.4295 0.0938 8 7 4.1877 2.5734 -0.4762 9 6 5.6566 2.6162 -0.4883 10 6 6.1713 1.7242 -1.6110 11 6 5.8964 2.4046 -2.9626 12 6 4.4280 2.2256 -3.3313 13 6 3.6968 3.5805 -3.3286 14 6 4.0975 4.3807 -2.0892 15 1 5.1813 4.3567 -1.9757 16 7 3.6507 5.7721 -2.2386 17 6 4.6356 6.5637 -2.9879 18 6 4.1435 7.9818 -3.1212 19 8 3.0776 8.3018 -2.6391 20 7 4.8885 8.8949 -3.7752 21 6 4.4412 10.1852 -3.8961 22 1 3.4919 10.4700 -3.4668 23 6 5.2089 11.1264 -4.5709 24 7 4.7799 12.3630 -4.6872 25 14 6.8510 10.6338 -5.3128 26 1 6.6442 10.1680 -6.7076 27 1 7.7654 11.8040 -5.3122 28 1 7.4488 9.5381 -4.5083 29 6 3.4390 3.7619 -0.8489 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 0.5508 2.2297 1.3428 36 1 1.9707 1.5242 2.1516 37 1 2.0959 3.1130 1.3590 38 1 5.9902 3.6405 -0.6547 39 1 6.0397 2.2575 0.4671 40 1 7.2438 1.5709 -1.4918 41 1 5.6589 0.7627 -1.5762 42 1 6.1254 3.4677 -2.8875 43 1 6.5220 1.9513 -3.7315 44 1 4.3588 1.7823 -4.3247 45 1 3.9546 1.5614 -2.6081 46 1 3.9667 4.1400 -4.2242 47 1 2.6200 3.4114 -3.3175 48 1 2.7431 5.8153 -2.6772 49 1 5.5871 6.5573 -2.4561 50 1 4.7706 6.1316 -3.9794 51 1 5.7412 8.6392 -4.1605 52 1 5.3160 13.0202 -5.1580 53 1 2.4086 3.4899 -1.0777 54 1 3.4563 4.4789 -0.0282 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001264112676.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:50:08 Heat of formation + Delta-G solvation = -96.114392 kcal Electronic energy + Delta-G solvation = -31395.187440 eV Core-core repulsion = 27365.776011 eV Total energy + Delta-G solvation = -4029.411429 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.83444 -40.32057 -39.18905 -36.74286 -36.25009 -35.79944 -35.18780 -33.73724 -32.78195 -30.77801 -29.47744 -27.66266 -27.42419 -26.15731 -25.31746 -24.00909 -23.02590 -21.94533 -21.27709 -20.77272 -20.31272 -19.53843 -18.11731 -17.95092 -17.31106 -17.03812 -16.70926 -16.42743 -15.98872 -15.91669 -15.47460 -15.36101 -15.07853 -14.98802 -14.76574 -14.59902 -14.35920 -14.26814 -14.07173 -13.81689 -13.71104 -13.45286 -13.20378 -13.02840 -13.01369 -12.84464 -12.60154 -12.54722 -12.40667 -12.38137 -12.34795 -12.03953 -11.96985 -11.65866 -11.64017 -11.60896 -11.49333 -11.48154 -11.21603 -10.52410 -10.38801 -10.22834 -9.59037 -9.24168 -8.39484 -6.00126 1.31431 1.36589 1.45602 1.64510 1.98516 1.98840 2.24342 2.76644 3.17344 3.38098 3.55249 3.64315 3.82099 3.86479 3.98466 4.00446 4.04733 4.15911 4.17636 4.20426 4.34905 4.40568 4.45217 4.50017 4.51938 4.57238 4.60922 4.61866 4.70115 4.74183 4.78340 4.88005 4.94517 4.96244 5.01377 5.07982 5.11067 5.13460 5.18656 5.21260 5.25376 5.33868 5.36562 5.42631 5.49439 5.54412 5.65229 5.92782 6.05695 6.40532 6.45532 6.61575 6.90545 7.20950 7.42394 7.98950 8.78081 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.017829 B = 0.002495 C = 0.002315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1570.080793 B =11220.706432 C =12090.368199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.101 4.101 3 C -0.111 4.111 4 H 0.107 0.893 5 C -0.141 4.141 6 C 0.517 3.483 7 O -0.576 6.576 8 N -0.597 5.597 9 C 0.111 3.889 10 C -0.133 4.133 11 C -0.122 4.122 12 C -0.110 4.110 13 C -0.144 4.144 14 C 0.068 3.932 15 H 0.104 0.896 16 N -0.672 5.672 17 C 0.063 3.937 18 C 0.450 3.550 19 O -0.612 6.612 20 N -0.592 5.592 21 C -0.326 4.326 22 H 0.056 0.944 23 C -0.016 4.016 24 N -0.935 5.935 25 Si 0.963 3.037 26 H -0.258 1.258 27 H -0.277 1.277 28 H -0.230 1.230 29 C 0.118 3.882 30 H 0.059 0.941 31 H 0.065 0.935 32 H 0.060 0.940 33 H 0.052 0.948 34 H 0.056 0.944 35 H 0.086 0.914 36 H 0.053 0.947 37 H 0.061 0.939 38 H 0.098 0.902 39 H 0.062 0.938 40 H 0.079 0.921 41 H 0.057 0.943 42 H 0.075 0.925 43 H 0.066 0.934 44 H 0.059 0.941 45 H 0.052 0.948 46 H 0.063 0.937 47 H 0.069 0.931 48 H 0.348 0.652 49 H 0.113 0.887 50 H 0.077 0.923 51 H 0.389 0.611 52 H 0.278 0.722 53 H 0.095 0.905 54 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.212 -26.585 5.258 27.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.139 4.139 3 C -0.132 4.132 4 H 0.125 0.875 5 C -0.198 4.198 6 C 0.307 3.693 7 O -0.456 6.456 8 N -0.329 5.329 9 C -0.011 4.011 10 C -0.172 4.172 11 C -0.160 4.160 12 C -0.149 4.149 13 C -0.183 4.183 14 C -0.042 4.042 15 H 0.121 0.879 16 N -0.304 5.304 17 C -0.069 4.069 18 C 0.238 3.762 19 O -0.496 6.496 20 N -0.234 5.234 21 C -0.456 4.456 22 H 0.074 0.926 23 C -0.215 4.215 24 N -0.576 5.576 25 Si 0.783 3.217 26 H -0.182 1.182 27 H -0.203 1.203 28 H -0.153 1.153 29 C -0.006 4.006 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.071 0.929 34 H 0.075 0.925 35 H 0.105 0.895 36 H 0.072 0.928 37 H 0.080 0.920 38 H 0.116 0.884 39 H 0.080 0.920 40 H 0.097 0.903 41 H 0.076 0.924 42 H 0.094 0.906 43 H 0.085 0.915 44 H 0.077 0.923 45 H 0.070 0.930 46 H 0.082 0.918 47 H 0.088 0.912 48 H 0.167 0.833 49 H 0.131 0.869 50 H 0.094 0.906 51 H 0.225 0.775 52 H 0.088 0.912 53 H 0.113 0.887 54 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 1.087 -26.472 6.255 27.223 hybrid contribution 0.567 0.219 -1.402 1.528 sum 1.655 -26.253 4.854 26.749 Atomic orbital electron populations 1.21811 0.93828 1.02380 1.02677 1.21301 0.96751 0.93914 1.01941 1.21452 0.90472 0.99522 1.01768 0.87488 1.21784 1.03286 1.00145 0.94583 1.21025 0.90967 0.82065 0.75243 1.90648 1.69756 1.33260 1.51942 1.47765 1.06961 1.11947 1.66213 1.21618 0.79162 1.01363 0.98959 1.21993 1.01472 0.99116 0.94580 1.21802 0.96132 1.01309 0.96715 1.21603 0.95677 0.96566 1.01040 1.22456 1.00938 0.96660 0.98238 1.22340 1.01574 0.85965 0.94357 0.87869 1.60055 1.05357 1.09641 1.55345 1.21643 0.97196 0.88830 0.99221 1.20976 0.85587 0.88505 0.81151 1.90550 1.25409 1.81857 1.51797 1.42046 1.20840 1.08862 1.51680 1.18999 1.05868 0.85663 1.35025 0.92591 1.26107 1.03352 0.94547 0.97466 1.69801 1.40778 1.04004 1.43015 0.85389 0.77012 0.79571 0.79707 1.18223 1.20266 1.15277 1.21621 0.96105 0.86018 0.96832 0.92149 0.91581 0.92048 0.92902 0.92516 0.89534 0.92785 0.91963 0.88387 0.91979 0.90267 0.92387 0.90649 0.91517 0.92258 0.92966 0.91791 0.91229 0.83286 0.86910 0.90571 0.77526 0.91220 0.88706 0.90698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 9.67 71.98 0.70 -1.01 16 2 C -0.10 -1.60 4.74 30.59 0.15 -1.45 16 3 C -0.11 -1.71 1.91 -11.54 -0.02 -1.73 16 4 H 0.11 1.36 6.37 -2.39 -0.02 1.35 16 5 C -0.14 -1.89 8.69 71.98 0.63 -1.27 16 6 C 0.52 10.57 5.40 87.66 0.47 11.04 16 7 O -0.58 -15.79 14.65 -3.04 -0.04 -15.83 16 8 N -0.60 -10.40 1.68 -823.95 -1.39 -11.78 16 9 C 0.11 1.86 5.21 86.08 0.45 2.31 16 10 C -0.13 -2.19 5.54 30.65 0.17 -2.02 16 11 C -0.12 -1.77 5.49 30.68 0.17 -1.60 16 12 C -0.11 -1.73 5.41 30.74 0.17 -1.56 16 13 C -0.14 -2.26 5.05 30.88 0.16 -2.10 16 14 C 0.07 1.16 1.99 45.02 0.09 1.25 16 15 H 0.10 1.66 3.01 -2.39 -0.01 1.65 16 16 N -0.67 -16.48 5.88 -495.00 -2.91 -19.39 16 17 C 0.06 1.71 5.95 85.56 0.51 2.21 16 18 C 0.45 19.04 7.82 87.66 0.69 19.72 16 19 O -0.61 -32.20 15.78 -3.05 -0.05 -32.25 16 20 N -0.59 -26.74 5.09 -306.99 -1.56 -28.30 16 21 C -0.33 -18.65 10.16 84.04 0.85 -17.79 16 22 H 0.06 3.83 7.39 -2.91 -0.02 3.81 16 23 C -0.02 -0.88 5.50 84.93 0.47 -0.42 16 24 N -0.94 -55.70 13.96 21.66 0.30 -55.39 16 25 Si 0.96 37.79 27.74 68.60 1.90 39.70 16 26 H -0.26 -9.58 7.11 99.48 0.71 -8.87 16 27 H -0.28 -10.93 7.11 99.48 0.71 -10.22 16 28 H -0.23 -7.47 6.52 99.48 0.65 -6.82 16 29 C 0.12 1.92 4.54 86.75 0.39 2.32 16 30 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.07 0.66 6.72 -2.39 -0.02 0.64 16 32 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.06 1.05 8.08 -2.39 -0.02 1.03 16 35 H 0.09 0.89 6.90 -2.39 -0.02 0.88 16 36 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.06 0.87 7.20 -2.39 -0.02 0.85 16 38 H 0.10 1.39 6.07 -2.39 -0.01 1.38 16 39 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.06 1.26 6.02 -2.38 -0.01 1.25 16 42 H 0.08 1.02 5.47 -2.39 -0.01 1.00 16 43 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 44 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 45 H 0.05 0.96 5.38 -2.39 -0.01 0.94 16 46 H 0.06 1.05 7.26 -2.39 -0.02 1.03 16 47 H 0.07 1.05 7.87 -2.39 -0.02 1.03 16 48 H 0.35 9.23 8.18 -89.70 -0.73 8.49 16 49 H 0.11 2.53 8.06 -2.39 -0.02 2.51 16 50 H 0.08 1.66 7.31 -2.39 -0.02 1.64 16 51 H 0.39 14.43 5.76 -92.71 -0.53 13.89 16 52 H 0.28 15.17 8.31 -92.71 -0.77 14.40 16 53 H 0.09 1.35 5.34 -2.39 -0.01 1.34 16 54 H 0.07 1.37 8.11 -2.39 -0.02 1.35 16 Total: -1.00 -75.74 398.50 1.88 -73.86 By element: Atomic # 1 Polarization: 41.91 SS G_CDS: -0.40 Total: 41.50 kcal Atomic # 6 Polarization: 1.86 SS G_CDS: 6.03 Total: 7.89 kcal Atomic # 7 Polarization: -109.32 SS G_CDS: -5.56 Total: -114.87 kcal Atomic # 8 Polarization: -47.99 SS G_CDS: -0.09 Total: -48.08 kcal Atomic # 14 Polarization: 37.79 SS G_CDS: 1.90 Total: 39.70 kcal Total: -75.74 1.88 -73.86 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264112676.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.251 kcal (2) G-P(sol) polarization free energy of solvation -75.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds