Wall clock time and date at job start Sat Apr 11 2020 05:50:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46644 * 2 1 4 4 H 1.08996 * 109.47043 * 305.02180 * 3 2 1 5 5 C 1.52996 * 109.47565 * 65.02583 * 3 2 1 6 6 C 1.50705 * 109.47111 * 62.75415 * 5 3 2 7 7 O 1.21276 * 119.99780 * 354.03588 * 6 5 3 8 8 N 1.34779 * 119.99759 * 174.03287 * 6 5 3 9 9 C 1.47419 * 125.65031 * 0.02562 * 8 6 5 10 10 C 1.54905 * 104.83412 * 204.09221 * 9 8 6 11 11 C 1.55163 * 101.58380 * 322.99332 * 10 9 8 12 12 H 1.08997 * 110.71566 * 276.96423 * 11 10 9 13 13 N 1.46897 * 110.72470 * 153.86278 * 11 10 9 14 14 C 1.46899 * 111.00050 * 86.45064 * 13 11 10 15 15 C 1.50696 * 109.47165 * 179.97438 * 14 13 11 16 16 O 1.21286 * 120.00289 * 0.02562 * 15 14 13 17 17 N 1.34782 * 119.99951 * 180.02562 * 15 14 13 18 18 C 1.37094 * 119.99648 * 180.02562 * 17 15 14 19 19 H 1.07997 * 120.00746 * 359.97438 * 18 17 15 20 20 C 1.38955 * 119.99780 * 179.97438 * 18 17 15 21 21 N 1.31418 * 119.99617 * 359.97438 * 20 18 17 22 22 Si 1.86790 * 120.00389 * 179.97438 * 20 18 17 23 23 H 1.48511 * 109.47299 * 59.99791 * 22 20 18 24 24 H 1.48503 * 109.47595 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.47205 * 300.00112 * 22 20 18 26 26 C 1.47026 * 125.64338 * 179.97438 * 8 6 5 27 27 C 1.53005 * 109.47018 * 185.02477 * 3 2 1 28 28 C 1.52996 * 109.46866 * 59.99677 * 27 3 2 29 29 C 1.52997 * 109.46915 * 179.97438 * 27 3 2 30 30 H 1.08998 * 109.47766 * 294.55387 * 1 2 3 31 31 H 1.08998 * 109.47415 * 54.55819 * 1 2 3 32 32 H 1.09004 * 109.46908 * 174.55034 * 1 2 3 33 33 H 1.08992 * 109.47793 * 239.99903 * 2 1 3 34 34 H 1.09004 * 109.46876 * 119.99351 * 2 1 3 35 35 H 1.09000 * 109.46950 * 302.76048 * 5 3 2 36 36 H 1.08997 * 109.47232 * 182.75814 * 5 3 2 37 37 H 1.09004 * 110.36856 * 85.25558 * 9 8 6 38 38 H 1.08998 * 110.36856 * 322.93281 * 9 8 6 39 39 H 1.08998 * 111.00345 * 81.06672 * 10 9 8 40 40 H 1.09000 * 111.00832 * 204.88291 * 10 9 8 41 41 H 1.00890 * 111.00380 * 210.41130 * 13 11 10 42 42 H 1.09005 * 109.47272 * 300.00814 * 14 13 11 43 43 H 1.09008 * 109.46944 * 60.00338 * 14 13 11 44 44 H 0.97001 * 119.99676 * 0.02562 * 17 15 14 45 45 H 0.97003 * 119.99543 * 179.97438 * 21 20 18 46 46 H 1.08997 * 109.87905 * 59.56567 * 26 8 6 47 47 H 1.08996 * 110.01244 * 298.46563 * 26 8 6 48 48 H 1.08996 * 109.46971 * 299.99747 * 27 3 2 49 49 H 1.09003 * 109.47542 * 59.99958 * 28 27 3 50 50 H 1.08998 * 109.47133 * 179.97438 * 28 27 3 51 51 H 1.09003 * 109.47455 * 300.00064 * 28 27 3 52 52 H 1.09008 * 109.46637 * 179.97438 * 29 27 3 53 53 H 1.08996 * 109.47370 * 299.99840 * 29 27 3 54 54 H 1.09001 * 109.47121 * 60.00585 * 29 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6049 1.9816 -0.8416 5 6 1.6357 2.1265 1.3076 6 6 2.2919 1.4217 2.4668 7 8 2.9234 0.4036 2.2786 8 7 2.1770 1.9230 3.7126 9 6 1.4420 3.1463 4.0821 10 6 2.0965 3.6180 5.4045 11 6 2.3918 2.2658 6.1057 12 1 1.5060 1.8987 6.6240 13 7 3.5193 2.3989 7.0379 14 6 3.0615 2.8595 8.3555 15 6 4.2429 2.9833 9.2828 16 8 5.3568 2.7148 8.8851 17 7 4.0618 3.3925 10.5541 18 6 5.1367 3.5056 11.3975 19 1 6.1285 3.2665 11.0434 20 6 4.9500 3.9280 12.7081 21 7 3.7431 4.2194 13.1389 22 14 6.4143 4.0814 13.8575 23 1 7.3814 5.0606 13.2993 24 1 5.9514 4.5465 15.1897 25 1 7.0745 2.7587 13.9975 26 6 2.7630 1.3396 4.9283 27 6 3.5647 1.4445 -0.1263 28 6 3.9689 0.7606 -1.4339 29 6 4.0745 2.8870 -0.1270 30 1 -0.3634 0.4270 0.9347 31 1 -0.3634 0.5959 -0.8372 32 1 -0.3633 -1.0231 -0.0976 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 0.5525 2.0817 1.4212 36 1 1.9561 3.1680 1.2870 37 1 0.3870 2.9220 4.2400 38 1 1.5576 3.9063 3.3094 39 1 3.0180 4.1668 5.2102 40 1 1.4023 4.2196 5.9913 41 1 4.0291 1.5317 7.1150 42 1 2.5764 3.8302 8.2527 43 1 2.3521 2.1405 8.7654 44 1 3.1709 3.6069 10.8723 45 1 3.6128 4.5139 14.0539 46 1 3.8469 1.2846 4.8276 47 1 2.3554 0.3431 5.0977 48 1 3.9997 0.9054 0.7152 49 1 3.5339 1.2997 -2.2755 50 1 5.0551 0.7624 -1.5242 51 1 3.6056 -0.2671 -1.4339 52 1 5.1609 2.8884 -0.2165 53 1 3.6395 3.4258 -0.9688 54 1 3.7865 3.3746 0.8044 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265941899.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:50:19 Heat of formation + Delta-G solvation = -106.925775 kcal Electronic energy + Delta-G solvation = -29988.244715 eV Core-core repulsion = 25958.364469 eV Total energy + Delta-G solvation = -4029.880246 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.47520 -40.23830 -39.36482 -37.61059 -36.18599 -35.53890 -33.72567 -33.27436 -32.02197 -30.79820 -29.83072 -27.95464 -27.75124 -26.12554 -25.27349 -24.09308 -22.38949 -21.58414 -21.23464 -20.95762 -19.92662 -19.75650 -18.09574 -17.71272 -17.53343 -16.83258 -16.58665 -16.33698 -16.04377 -15.90953 -15.73567 -15.38322 -15.12825 -14.94520 -14.59386 -14.50674 -14.35786 -13.93598 -13.70702 -13.59753 -13.47895 -13.43080 -13.16130 -13.03733 -12.90985 -12.84608 -12.76094 -12.54103 -12.47427 -12.42588 -12.27550 -12.13505 -12.08893 -11.83976 -11.81432 -11.50722 -11.47673 -11.09112 -11.04024 -10.37833 -10.30995 -10.01794 -9.61821 -9.39325 -8.46862 -5.95390 1.39581 1.41801 1.52388 1.69052 1.95812 2.05385 2.29571 2.92184 3.20467 3.36040 3.52000 3.70234 3.75639 3.83857 3.95474 4.11604 4.14200 4.25593 4.30042 4.34694 4.39381 4.49917 4.51234 4.56248 4.59298 4.61417 4.63298 4.68130 4.73401 4.78354 4.81656 4.84344 4.88689 5.00076 5.03230 5.04942 5.12004 5.15521 5.20690 5.25028 5.31944 5.37195 5.40841 5.46642 5.52670 5.59857 5.75762 5.88380 6.09470 6.29131 6.58645 6.60292 7.12597 7.25037 7.56188 8.11952 8.70095 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.026131 B = 0.001762 C = 0.001716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.272286 B =15891.670769 C =16317.848934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.136 4.136 3 C -0.059 4.059 4 H 0.094 0.906 5 C -0.130 4.130 6 C 0.521 3.479 7 O -0.569 6.569 8 N -0.619 5.619 9 C 0.101 3.899 10 C -0.122 4.122 11 C 0.078 3.922 12 H 0.078 0.922 13 N -0.674 5.674 14 C 0.069 3.931 15 C 0.436 3.564 16 O -0.626 6.626 17 N -0.572 5.572 18 C -0.335 4.335 19 H 0.077 0.923 20 C -0.012 4.012 21 N -0.918 5.918 22 Si 0.992 3.008 23 H -0.273 1.273 24 H -0.269 1.269 25 H -0.273 1.273 26 C 0.111 3.889 27 C -0.110 4.110 28 C -0.142 4.142 29 C -0.145 4.145 30 H 0.051 0.949 31 H 0.066 0.934 32 H 0.048 0.952 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.116 0.884 36 H 0.110 0.890 37 H 0.094 0.906 38 H 0.100 0.900 39 H 0.069 0.931 40 H 0.103 0.897 41 H 0.344 0.656 42 H 0.110 0.890 43 H 0.070 0.930 44 H 0.398 0.602 45 H 0.278 0.722 46 H 0.051 0.949 47 H 0.063 0.937 48 H 0.064 0.936 49 H 0.064 0.936 50 H 0.045 0.955 51 H 0.051 0.949 52 H 0.043 0.957 53 H 0.069 0.931 54 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.624 -1.160 -26.292 29.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.173 4.173 3 C -0.078 4.078 4 H 0.112 0.888 5 C -0.169 4.169 6 C 0.312 3.688 7 O -0.449 6.449 8 N -0.354 5.354 9 C -0.021 4.021 10 C -0.160 4.160 11 C -0.032 4.032 12 H 0.096 0.904 13 N -0.306 5.306 14 C -0.064 4.064 15 C 0.223 3.777 16 O -0.513 6.513 17 N -0.209 5.209 18 C -0.465 4.465 19 H 0.095 0.905 20 C -0.212 4.212 21 N -0.559 5.559 22 Si 0.815 3.185 23 H -0.198 1.198 24 H -0.194 1.194 25 H -0.198 1.198 26 C -0.013 4.013 27 C -0.128 4.128 28 C -0.200 4.200 29 C -0.202 4.202 30 H 0.070 0.930 31 H 0.085 0.915 32 H 0.067 0.933 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.134 0.866 36 H 0.128 0.872 37 H 0.112 0.888 38 H 0.118 0.882 39 H 0.088 0.912 40 H 0.121 0.879 41 H 0.163 0.837 42 H 0.128 0.872 43 H 0.088 0.912 44 H 0.232 0.768 45 H 0.087 0.913 46 H 0.070 0.930 47 H 0.082 0.918 48 H 0.082 0.918 49 H 0.083 0.917 50 H 0.064 0.936 51 H 0.070 0.930 52 H 0.062 0.938 53 H 0.088 0.912 54 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -12.462 -1.205 -26.755 29.539 hybrid contribution 0.320 -0.868 1.572 1.824 sum -12.142 -2.073 -25.182 28.033 Atomic orbital electron populations 1.21797 0.95276 1.01581 1.01897 1.21842 0.96066 0.96917 1.02464 1.20984 0.94775 0.96043 0.95975 0.88784 1.21888 1.02561 1.01045 0.91449 1.21074 0.80094 0.84532 0.83074 1.90591 1.43556 1.26749 1.83977 1.48629 1.52977 1.27700 1.06075 1.22597 0.96535 0.85764 0.97193 1.22886 1.01713 0.96060 0.95378 1.22616 0.92575 0.96449 0.91590 0.90419 1.60160 1.24146 1.37497 1.08841 1.21563 0.93575 1.03017 0.88200 1.20925 0.91206 0.82375 0.83165 1.90502 1.27853 1.56236 1.76678 1.41909 1.10149 1.59217 1.09613 1.19612 0.89616 1.44409 0.92855 0.90490 1.26015 1.00547 0.96122 0.98496 1.69660 1.22102 1.45339 1.18785 0.85009 0.77593 0.78729 0.77126 1.19796 1.19378 1.19849 1.21817 0.98285 0.96554 0.84626 1.21379 0.95937 0.96667 0.98825 1.21827 1.00619 1.00450 0.97056 1.21869 1.00528 0.96021 1.01824 0.92957 0.91506 0.93322 0.92122 0.92111 0.86640 0.87186 0.88767 0.88165 0.91244 0.87882 0.83730 0.87159 0.91222 0.76842 0.91265 0.93025 0.91833 0.91817 0.91700 0.93589 0.92977 0.93763 0.91193 0.93194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 9.53 71.98 0.69 -1.18 16 2 C -0.14 -2.27 4.97 30.59 0.15 -2.12 16 3 C -0.06 -0.84 1.72 -10.79 -0.02 -0.86 16 4 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 5 C -0.13 -1.68 4.00 29.85 0.12 -1.56 16 6 C 0.52 11.04 7.22 87.66 0.63 11.67 16 7 O -0.57 -16.54 11.72 -3.02 -0.04 -16.58 16 8 N -0.62 -12.11 3.33 -811.80 -2.70 -14.81 16 9 C 0.10 1.24 6.69 86.85 0.58 1.82 16 10 C -0.12 -2.05 6.71 31.99 0.21 -1.83 16 11 C 0.08 1.66 3.24 46.11 0.15 1.81 16 12 H 0.08 1.42 7.89 -2.39 -0.02 1.40 16 13 N -0.67 -20.38 5.93 -489.43 -2.90 -23.28 16 14 C 0.07 2.21 6.02 85.56 0.52 2.72 16 15 C 0.44 20.41 7.82 87.65 0.69 21.09 16 16 O -0.63 -34.82 15.78 -3.05 -0.05 -34.87 16 17 N -0.57 -28.91 5.29 -306.99 -1.62 -30.53 16 18 C -0.34 -18.99 9.68 84.04 0.81 -18.17 16 19 H 0.08 4.67 7.16 -2.91 -0.02 4.65 16 20 C -0.01 -0.63 5.50 84.93 0.47 -0.16 16 21 N -0.92 -48.92 13.05 21.67 0.28 -48.64 16 22 Si 0.99 42.82 29.55 68.60 2.03 44.85 16 23 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 24 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 25 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 26 C 0.11 2.60 6.39 86.73 0.55 3.16 16 27 C -0.11 -1.97 2.17 -10.79 -0.02 -1.99 16 28 C -0.14 -2.26 8.85 71.98 0.64 -1.63 16 29 C -0.15 -2.25 8.84 71.98 0.64 -1.61 16 30 H 0.05 0.63 6.78 -2.39 -0.02 0.61 16 31 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.05 0.63 8.14 -2.38 -0.02 0.61 16 33 H 0.06 1.00 6.17 -2.39 -0.01 0.98 16 34 H 0.06 1.43 5.46 -2.38 -0.01 1.42 16 35 H 0.12 1.01 6.56 -2.39 -0.02 1.00 16 36 H 0.11 1.05 6.01 -2.39 -0.01 1.03 16 37 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.10 0.82 7.30 -2.39 -0.02 0.80 16 39 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.34 11.41 8.15 -89.70 -0.73 10.68 16 42 H 0.11 3.07 8.13 -2.38 -0.02 3.05 16 43 H 0.07 1.93 8.09 -2.38 -0.02 1.91 16 44 H 0.40 18.87 7.90 -92.71 -0.73 18.14 16 45 H 0.28 13.89 8.31 -92.71 -0.77 13.12 16 46 H 0.05 1.49 7.97 -2.39 -0.02 1.47 16 47 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 48 H 0.06 1.64 5.50 -2.39 -0.01 1.62 16 49 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 50 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 51 H 0.05 0.87 6.32 -2.39 -0.02 0.85 16 52 H 0.04 0.75 8.14 -2.38 -0.02 0.73 16 53 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 54 H 0.05 0.78 6.49 -2.39 -0.02 0.76 16 Total: -1.00 -72.37 415.05 1.25 -71.12 By element: Atomic # 1 Polarization: 42.14 SS G_CDS: -0.56 Total: 41.58 kcal Atomic # 6 Polarization: 4.36 SS G_CDS: 6.80 Total: 11.16 kcal Atomic # 7 Polarization: -110.32 SS G_CDS: -6.94 Total: -117.26 kcal Atomic # 8 Polarization: -51.36 SS G_CDS: -0.08 Total: -51.45 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.85 kcal Total: -72.37 1.25 -71.12 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265941899.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.804 kcal (2) G-P(sol) polarization free energy of solvation -72.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds