Wall clock time and date at job start Sat Apr 11 2020 05:51:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47188 * 2 1 4 4 N 1.46495 * 109.47598 * 180.02562 * 3 2 1 5 5 C 1.46761 * 124.34985 * 89.99726 * 4 3 2 6 6 C 1.54486 * 105.54997 * 162.92266 * 5 4 3 7 7 H 1.08996 * 110.97263 * 267.34212 * 6 5 4 8 8 C 1.50707 * 110.96718 * 143.58012 * 6 5 4 9 9 O 1.21275 * 119.99875 * 0.02562 * 8 6 5 10 10 N 1.34769 * 119.99656 * 180.02562 * 8 6 5 11 11 C 1.46502 * 120.00044 * 174.78338 * 10 8 6 12 12 H 1.09004 * 109.46886 * 328.06967 * 11 10 8 13 13 C 1.52998 * 109.47271 * 208.06493 * 11 10 8 14 14 N 1.46504 * 109.46852 * 55.00218 * 13 11 10 15 15 C 1.36940 * 119.99481 * 180.02562 * 14 13 11 16 16 H 1.08000 * 120.00515 * 359.97438 * 15 14 13 17 17 C 1.38811 * 119.99640 * 179.97438 * 15 14 13 18 18 N 1.31621 * 120.00245 * 359.97438 * 17 15 14 19 19 Si 1.86794 * 120.00197 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47271 * 89.99744 * 19 17 15 21 21 H 1.48499 * 109.47594 * 209.99850 * 19 17 15 22 22 H 1.48503 * 109.47112 * 329.99694 * 19 17 15 23 23 C 1.53004 * 109.47091 * 88.06556 * 11 10 8 24 24 C 1.52997 * 109.47028 * 184.07200 * 23 11 10 25 25 C 1.52999 * 109.47257 * 66.12900 * 24 23 11 26 26 C 1.52998 * 109.47206 * 186.12559 * 24 23 11 27 27 C 1.54858 * 101.66041 * 25.43822 * 6 5 4 28 28 C 1.34418 * 124.35023 * 269.98348 * 4 3 2 29 29 O 1.21281 * 124.94438 * 0.40354 * 28 4 3 30 30 H 1.09001 * 109.47717 * 59.99295 * 1 2 3 31 31 H 1.09004 * 109.47253 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.46835 * 299.99642 * 1 2 3 33 33 H 1.08997 * 109.46914 * 240.00685 * 2 1 3 34 34 H 1.09000 * 109.47675 * 120.00155 * 2 1 3 35 35 H 1.09005 * 109.46940 * 60.00423 * 3 2 1 36 36 H 1.09001 * 109.47367 * 300.00919 * 3 2 1 37 37 H 1.08997 * 110.24898 * 281.96970 * 5 4 3 38 38 H 1.08998 * 110.24351 * 43.88443 * 5 4 3 39 39 H 0.97006 * 120.00574 * 354.78333 * 10 8 6 40 40 H 1.08998 * 109.46894 * 174.99992 * 13 11 10 41 41 H 1.09001 * 109.47539 * 294.99877 * 13 11 10 42 42 H 0.96991 * 120.00098 * 359.97438 * 14 13 11 43 43 H 0.96997 * 120.00685 * 180.02562 * 18 17 15 44 44 H 1.08996 * 109.46829 * 304.07504 * 23 11 10 45 45 H 1.08999 * 109.46917 * 64.07596 * 23 11 10 46 46 H 1.08993 * 109.47480 * 306.12658 * 24 23 11 47 47 H 1.09000 * 109.47078 * 63.66739 * 25 24 23 48 48 H 1.09003 * 109.47400 * 183.66928 * 25 24 23 49 49 H 1.09011 * 109.46948 * 303.66988 * 25 24 23 50 50 H 1.09000 * 109.47175 * 59.99809 * 26 24 23 51 51 H 1.08998 * 109.47625 * 180.02562 * 26 24 23 52 52 H 1.09002 * 109.47266 * 300.00378 * 26 24 23 53 53 H 1.08991 * 110.47056 * 216.51363 * 27 6 5 54 54 H 1.09002 * 110.48805 * 93.87576 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4426 -0.0006 5 6 4.3325 1.4428 -1.2126 6 6 5.7409 1.8799 -0.7524 7 1 5.8656 2.9584 -0.8488 8 6 6.8108 1.1448 -1.5180 9 8 6.5016 0.3348 -2.3660 10 7 8.1112 1.3876 -1.2603 11 6 9.1497 0.5932 -1.9212 12 1 8.7783 -0.4165 -2.0963 13 6 10.3909 0.5327 -1.0287 14 7 10.0175 0.0224 0.2929 15 6 10.9703 -0.1193 1.2663 16 1 11.9969 0.1447 1.0596 17 6 10.6164 -0.6023 2.5186 18 7 9.3652 -0.9235 2.7707 19 14 11.9161 -0.7963 3.8462 20 1 12.0123 0.4600 4.6322 21 1 11.5407 -1.9159 4.7466 22 1 13.2286 -1.0872 3.2153 23 6 9.5142 1.2415 -3.2583 24 6 10.5240 0.3589 -3.9945 25 6 9.8588 -0.9633 -4.3818 26 6 11.0040 1.0773 -5.2573 27 6 5.7301 1.4534 0.7363 28 6 4.2639 1.4428 1.1088 29 8 3.8356 1.4359 2.2435 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8901 33 1 1.8933 -0.5137 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 1.6767 1.9563 0.8901 36 1 1.6765 1.9564 -0.8899 37 1 4.3702 0.4425 -1.6439 38 1 3.9364 2.1517 -1.9397 39 1 8.3596 2.0884 -0.6373 40 1 11.1299 -0.1302 -1.4786 41 1 10.8138 1.5320 -0.9261 42 1 9.0954 -0.2143 0.4786 43 1 9.1178 -1.2607 3.6459 44 1 8.6159 1.3506 -3.8660 45 1 9.9527 2.2231 -3.0786 46 1 11.3755 0.1603 -3.3437 47 1 9.0480 -0.7701 -5.0842 48 1 10.5952 -1.6178 -4.8481 49 1 9.4591 -1.4442 -3.4888 50 1 11.4779 2.0193 -4.9815 51 1 11.7231 0.4483 -5.7821 52 1 10.1525 1.2759 -5.9082 53 1 6.2729 2.1771 1.3441 54 1 6.1601 0.4584 0.8512 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268113651.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:51:21 Heat of formation + Delta-G solvation = -106.121366 kcal Electronic energy + Delta-G solvation = -30915.830301 eV Core-core repulsion = 26885.984936 eV Total energy + Delta-G solvation = -4029.845364 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.90702 -40.56986 -38.57842 -37.44162 -36.31322 -35.75388 -35.08129 -33.08317 -32.36521 -30.39625 -28.75565 -27.97383 -27.26511 -27.17270 -24.86725 -24.22972 -22.74744 -22.45098 -21.22229 -20.54084 -20.43803 -19.19666 -18.53964 -17.86832 -17.23105 -17.09164 -16.70071 -16.25557 -16.11018 -15.82050 -15.55225 -15.32261 -15.04096 -14.96263 -14.82186 -14.61879 -14.43811 -14.22170 -14.13411 -13.82472 -13.64887 -13.33347 -13.10939 -13.08202 -12.90711 -12.78437 -12.75475 -12.62292 -12.51534 -12.41915 -12.21440 -12.19964 -12.00475 -11.84168 -11.75490 -11.68060 -11.50870 -11.30763 -11.12697 -10.93592 -10.68630 -9.93247 -9.76435 -8.96702 -7.92165 -5.20413 1.43181 1.48722 1.49179 1.57504 1.59450 1.87806 2.27192 2.57333 3.20395 3.36158 3.43004 3.71100 3.82253 3.85069 3.95673 3.99173 4.03080 4.11050 4.18541 4.23979 4.25437 4.32734 4.47070 4.50509 4.53417 4.61104 4.63607 4.64790 4.80458 4.81484 4.85529 4.85889 4.94287 4.97348 4.99640 5.05679 5.09632 5.13236 5.16460 5.17196 5.20836 5.31659 5.39981 5.52293 5.53290 5.56725 5.57223 5.64963 5.99590 6.28105 6.60436 7.04905 7.26116 7.36708 8.11288 8.34451 9.30048 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.007318 B = 0.003734 C = 0.002630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3825.435453 B = 7497.188850 C =10643.946139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.142 4.142 3 C 0.122 3.878 4 N -0.612 5.612 5 C 0.121 3.879 6 C -0.108 4.108 7 H 0.154 0.846 8 C 0.528 3.472 9 O -0.570 6.570 10 N -0.704 5.704 11 C 0.145 3.855 12 H 0.065 0.935 13 C 0.145 3.855 14 N -0.741 5.741 15 C -0.240 4.240 16 H 0.077 0.923 17 C -0.070 4.070 18 N -0.964 5.964 19 Si 0.966 3.034 20 H -0.287 1.287 21 H -0.302 1.302 22 H -0.270 1.270 23 C -0.106 4.106 24 C -0.098 4.098 25 C -0.146 4.146 26 C -0.139 4.139 27 C -0.138 4.138 28 C 0.515 3.485 29 O -0.577 6.577 30 H 0.076 0.924 31 H 0.058 0.942 32 H 0.055 0.945 33 H 0.067 0.933 34 H 0.034 0.966 35 H 0.072 0.928 36 H 0.115 0.885 37 H 0.075 0.925 38 H 0.120 0.880 39 H 0.410 0.590 40 H 0.036 0.964 41 H 0.038 0.962 42 H 0.374 0.626 43 H 0.248 0.752 44 H 0.064 0.936 45 H 0.078 0.922 46 H 0.069 0.931 47 H 0.055 0.945 48 H 0.060 0.940 49 H 0.036 0.964 50 H 0.061 0.939 51 H 0.059 0.941 52 H 0.056 0.944 53 H 0.116 0.884 54 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.935 9.648 -16.569 21.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.181 4.181 3 C 0.002 3.998 4 N -0.345 5.345 5 C -0.002 4.002 6 C -0.129 4.129 7 H 0.171 0.829 8 C 0.314 3.686 9 O -0.450 6.450 10 N -0.354 5.354 11 C 0.040 3.960 12 H 0.083 0.917 13 C 0.019 3.981 14 N -0.384 5.384 15 C -0.372 4.372 16 H 0.095 0.905 17 C -0.263 4.263 18 N -0.614 5.614 19 Si 0.796 3.204 20 H -0.214 1.214 21 H -0.229 1.229 22 H -0.195 1.195 23 C -0.145 4.145 24 C -0.117 4.117 25 C -0.203 4.203 26 C -0.196 4.196 27 C -0.179 4.179 28 C 0.303 3.697 29 O -0.457 6.457 30 H 0.095 0.905 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.086 0.914 34 H 0.052 0.948 35 H 0.091 0.909 36 H 0.133 0.867 37 H 0.093 0.907 38 H 0.138 0.862 39 H 0.246 0.754 40 H 0.054 0.946 41 H 0.055 0.945 42 H 0.207 0.793 43 H 0.057 0.943 44 H 0.083 0.917 45 H 0.097 0.903 46 H 0.088 0.912 47 H 0.074 0.926 48 H 0.079 0.921 49 H 0.055 0.945 50 H 0.080 0.920 51 H 0.078 0.922 52 H 0.075 0.925 53 H 0.134 0.866 54 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -10.265 9.068 -16.539 21.474 hybrid contribution 0.546 -0.573 1.764 1.933 sum -9.719 8.496 -14.775 19.620 Atomic orbital electron populations 1.21655 0.93098 1.02502 1.02801 1.21902 0.97869 0.96940 1.01383 1.21662 0.76502 0.97316 1.04357 1.48439 1.07121 1.72091 1.06816 1.22070 0.87554 1.03970 0.86577 1.22260 0.93768 1.03838 0.93069 0.82873 1.20337 0.83734 0.82129 0.82376 1.90674 1.82533 1.36739 1.35026 1.45903 1.05141 1.38126 1.46220 1.21164 0.87220 0.95147 0.92431 0.91730 1.21162 0.94675 0.97428 0.84882 1.42493 1.08427 1.78313 1.09147 1.19569 0.91186 1.34683 0.91724 0.90489 1.25451 0.97921 1.02851 1.00043 1.69799 1.17476 1.51877 1.22278 0.85255 0.79018 0.76730 0.79431 1.21428 1.22937 1.19486 1.21856 0.99426 0.99349 0.93880 1.21146 0.97800 0.95142 0.97606 1.21851 1.00545 0.97206 1.00707 1.21772 1.01138 1.00349 0.96359 1.22253 0.94174 1.05026 0.96417 1.21073 0.89837 0.74453 0.84332 1.90689 1.79370 1.52577 1.23035 0.90547 0.92264 0.92570 0.91448 0.94752 0.90934 0.86651 0.90660 0.86176 0.75380 0.94640 0.94458 0.79348 0.94350 0.91712 0.90300 0.91248 0.92621 0.92092 0.94507 0.91984 0.92151 0.92489 0.86562 0.89565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.06 9.91 71.98 0.71 -1.35 16 2 C -0.14 -2.82 6.26 30.59 0.19 -2.63 16 3 C 0.12 2.31 5.93 86.38 0.51 2.82 16 4 N -0.61 -14.36 2.93 -817.98 -2.40 -16.76 16 5 C 0.12 2.37 6.70 86.83 0.58 2.95 16 6 C -0.11 -2.27 3.56 -10.40 -0.04 -2.31 16 7 H 0.15 2.06 8.14 -2.39 -0.02 2.04 16 8 C 0.53 14.40 7.05 87.66 0.62 15.02 16 9 O -0.57 -18.91 15.17 -3.02 -0.05 -18.96 16 10 N -0.70 -19.29 4.49 -442.53 -1.98 -21.28 16 11 C 0.15 4.36 2.08 44.99 0.09 4.46 16 12 H 0.06 2.33 5.77 -2.38 -0.01 2.32 16 13 C 0.15 5.18 5.45 86.38 0.47 5.65 16 14 N -0.74 -35.00 5.43 -343.44 -1.87 -36.86 16 15 C -0.24 -12.75 9.99 84.03 0.84 -11.91 16 16 H 0.08 3.92 7.83 -2.91 -0.02 3.89 16 17 C -0.07 -3.92 5.50 84.86 0.47 -3.45 16 18 N -0.96 -58.15 13.06 21.65 0.28 -57.87 16 19 Si 0.97 45.66 29.55 68.60 2.03 47.69 16 20 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 21 H -0.30 -14.71 7.11 99.48 0.71 -14.01 16 22 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 23 C -0.11 -2.48 4.47 30.59 0.14 -2.34 16 24 C -0.10 -2.16 2.78 -10.80 -0.03 -2.19 16 25 C -0.15 -3.48 9.05 71.98 0.65 -2.83 16 26 C -0.14 -2.39 9.19 71.98 0.66 -1.73 16 27 C -0.14 -3.94 6.42 30.67 0.20 -3.74 16 28 C 0.51 16.22 8.02 87.90 0.71 16.93 16 29 O -0.58 -23.32 17.60 -3.03 -0.05 -23.37 16 30 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 33 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.07 1.53 7.93 -2.38 -0.02 1.51 16 36 H 0.12 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.08 1.79 6.96 -2.39 -0.02 1.78 16 38 H 0.12 1.50 8.14 -2.39 -0.02 1.48 16 39 H 0.41 10.37 8.64 -92.70 -0.80 9.57 16 40 H 0.04 1.30 6.66 -2.39 -0.02 1.28 16 41 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 42 H 0.37 19.19 7.33 -92.72 -0.68 18.51 16 43 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16 44 H 0.06 1.56 8.14 -2.39 -0.02 1.55 16 45 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 46 H 0.07 1.66 6.37 -2.39 -0.02 1.64 16 47 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 48 H 0.06 1.29 8.14 -2.39 -0.02 1.28 16 49 H 0.04 1.05 6.36 -2.38 -0.02 1.03 16 50 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 51 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 52 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 53 H 0.12 3.18 8.14 -2.39 -0.02 3.16 16 54 H 0.09 3.07 7.90 -2.39 -0.02 3.05 16 Total: -1.00 -73.33 430.39 2.14 -71.19 By element: Atomic # 1 Polarization: 43.48 SS G_CDS: -0.60 Total: 42.89 kcal Atomic # 6 Polarization: 6.57 SS G_CDS: 6.77 Total: 13.34 kcal Atomic # 7 Polarization: -126.80 SS G_CDS: -5.97 Total: -132.77 kcal Atomic # 8 Polarization: -42.23 SS G_CDS: -0.10 Total: -42.33 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.69 kcal Total: -73.33 2.14 -71.19 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268113651.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.931 kcal (2) G-P(sol) polarization free energy of solvation -73.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds