Wall clock time and date at job start Sat Apr 11 2020 05:51:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47013 * 2 1 4 4 H 1.09000 * 109.46986 * 302.96457 * 3 2 1 5 5 C 1.53002 * 109.47016 * 182.96900 * 3 2 1 6 6 N 1.46501 * 109.46973 * 185.00392 * 5 3 2 7 7 C 1.34779 * 119.99617 * 180.02562 * 6 5 3 8 8 O 1.21271 * 120.00407 * 359.97438 * 7 6 5 9 9 C 1.50708 * 119.99512 * 179.72297 * 7 6 5 10 10 H 1.08998 * 109.47014 * 300.26981 * 9 7 6 11 11 C 1.52993 * 109.47105 * 60.27074 * 9 7 6 12 12 C 1.53003 * 109.46901 * 180.27239 * 9 7 6 13 13 C 1.54263 * 110.03003 * 177.90440 * 12 9 7 14 14 C 1.54961 * 104.16162 * 217.13496 * 13 12 9 15 15 C 1.54896 * 102.77710 * 37.89072 * 14 13 12 16 16 C 1.53876 * 110.02972 * 60.68791 * 12 9 7 17 17 N 1.46895 * 109.47021 * 62.96777 * 3 2 1 18 18 C 1.46906 * 111.00114 * 65.52187 * 17 3 2 19 19 C 1.50699 * 109.47313 * 182.18330 * 18 17 3 20 20 O 1.21295 * 119.99465 * 359.97438 * 19 18 17 21 21 N 1.34768 * 119.99999 * 179.97438 * 19 18 17 22 22 C 1.37102 * 119.99917 * 179.97438 * 21 19 18 23 23 H 1.08001 * 119.99904 * 359.97438 * 22 21 19 24 24 C 1.38947 * 119.99881 * 180.02562 * 22 21 19 25 25 N 1.31418 * 120.00001 * 180.02562 * 24 22 21 26 26 Si 1.86796 * 120.00324 * 359.97438 * 24 22 21 27 27 H 1.48501 * 109.47072 * 90.00150 * 26 24 22 28 28 H 1.48494 * 109.47215 * 210.00165 * 26 24 22 29 29 H 1.48505 * 109.47129 * 330.00363 * 26 24 22 30 30 H 1.08994 * 109.46806 * 294.77245 * 1 2 3 31 31 H 1.08995 * 109.47294 * 54.77992 * 1 2 3 32 32 H 1.09003 * 109.46878 * 174.77630 * 1 2 3 33 33 H 1.09007 * 109.46895 * 240.00368 * 2 1 3 34 34 H 1.09001 * 109.47135 * 120.00211 * 2 1 3 35 35 H 1.08999 * 109.47632 * 64.99806 * 5 3 2 36 36 H 1.09006 * 109.47132 * 304.99604 * 5 3 2 37 37 H 0.96994 * 120.00365 * 359.97438 * 6 5 3 38 38 H 1.08998 * 109.47261 * 60.00058 * 11 9 7 39 39 H 1.09005 * 109.47123 * 179.97438 * 11 9 7 40 40 H 1.09003 * 109.47432 * 299.99961 * 11 9 7 41 41 H 1.08997 * 110.01619 * 299.30068 * 12 9 7 42 42 H 1.08996 * 110.48733 * 335.78668 * 13 12 9 43 43 H 1.09004 * 110.48599 * 98.42917 * 13 12 9 44 44 H 1.09000 * 110.72084 * 279.57978 * 14 13 12 45 45 H 1.09000 * 110.76807 * 156.22453 * 14 13 12 46 46 H 1.08996 * 110.48944 * 203.40624 * 15 14 13 47 47 H 1.08998 * 110.59760 * 80.81563 * 15 14 13 48 48 H 1.08995 * 110.03351 * 238.56636 * 16 12 9 49 49 H 1.08999 * 110.03744 * 359.97438 * 16 12 9 50 50 H 1.00901 * 111.00049 * 189.46908 * 17 3 2 51 51 H 1.09006 * 109.46861 * 302.18369 * 18 17 3 52 52 H 1.09001 * 109.46814 * 62.18045 * 18 17 3 53 53 H 0.96995 * 120.00109 * 0.02562 * 21 19 18 54 54 H 0.96995 * 120.00185 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6339 1.9714 -0.8622 5 6 3.5682 1.4432 -0.0747 6 7 4.0624 2.8170 0.0455 7 6 5.3870 3.0625 0.0060 8 8 6.1698 2.1462 -0.1287 9 6 5.8951 4.4765 0.1234 10 1 5.4877 5.0776 -0.6896 11 6 5.4547 5.0669 1.4644 12 6 7.4229 4.4778 0.0425 13 6 7.9543 5.9245 0.1087 14 6 9.1598 5.9305 -0.8650 15 6 8.6728 5.0190 -2.0188 16 6 7.8797 3.9020 -1.3093 17 7 1.6097 2.1139 1.2336 18 6 2.2440 1.5076 2.4118 19 6 1.7388 2.1856 3.6592 20 8 0.9303 3.0859 3.5750 21 7 2.1854 1.7918 4.8682 22 6 1.7262 2.4091 6.0030 23 1 1.0069 3.2112 5.9280 24 6 2.1870 2.0034 7.2495 25 7 1.7464 2.5947 8.3373 26 14 3.4317 0.6166 7.3792 27 1 4.8055 1.1782 7.3301 28 1 3.2373 -0.1045 8.6627 29 1 3.2417 -0.3265 6.2479 30 1 -0.3633 0.4306 0.9331 31 1 -0.3633 0.5926 -0.8395 32 1 -0.3633 -1.0234 -0.0936 33 1 1.8933 -0.5138 -0.8901 34 1 1.8933 -0.5139 0.8900 35 1 3.8855 1.0251 -1.0300 36 1 3.9720 0.8394 0.7381 37 1 3.4363 3.5500 0.1528 38 1 5.8621 4.4659 2.2773 39 1 5.8226 6.0895 1.5495 40 1 4.3662 5.0660 1.5220 41 1 7.8402 3.8890 0.8593 42 1 7.1908 6.6270 -0.2253 43 1 8.2794 6.1656 1.1208 44 1 10.0440 5.5091 -0.3867 45 1 9.3590 6.9391 -1.2273 46 1 9.5220 4.6001 -2.5585 47 1 8.0258 5.5735 -2.6985 48 1 8.5194 3.0343 -1.1486 49 1 7.0129 3.6212 -1.9077 50 1 1.7984 3.1042 1.1910 51 1 1.9989 0.4461 2.4505 52 1 3.3252 1.6285 2.3449 53 1 2.8323 1.0722 4.9355 54 1 2.0678 2.3113 9.2075 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269492345.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:51:34 Heat of formation + Delta-G solvation = -119.558031 kcal Electronic energy + Delta-G solvation = -30923.258463 eV Core-core repulsion = 26892.830442 eV Total energy + Delta-G solvation = -4030.428022 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.43128 -40.44161 -39.18861 -38.30195 -36.01352 -35.16091 -34.11831 -33.76433 -33.10117 -29.85013 -29.64319 -28.54256 -28.01484 -25.96896 -25.26784 -23.74477 -21.74182 -21.47018 -21.38063 -20.94588 -20.39427 -20.10089 -18.37240 -18.12186 -17.23493 -17.14931 -16.66420 -16.53853 -16.31435 -15.88469 -15.75994 -15.44586 -15.17014 -15.00940 -14.65028 -14.53622 -14.29564 -14.24899 -14.13505 -13.98361 -13.73320 -13.58503 -13.19384 -13.16079 -12.93193 -12.66136 -12.53185 -12.43580 -12.29179 -12.01116 -12.00219 -11.88845 -11.86423 -11.78279 -11.59191 -11.55501 -11.50736 -11.46739 -11.28510 -10.69564 -10.44141 -10.25490 -10.13027 -9.38075 -8.42630 -6.02450 1.27622 1.31676 1.40261 1.62581 1.94101 2.14003 2.19853 2.71867 3.13977 3.39061 3.52742 3.66680 3.69771 3.73895 3.94133 4.02438 4.10115 4.17477 4.21880 4.25868 4.34463 4.39863 4.42382 4.53116 4.58207 4.66682 4.67726 4.69996 4.74325 4.77990 4.85402 4.85991 4.93958 4.97726 4.99642 5.11765 5.13148 5.19767 5.22196 5.26912 5.36080 5.39653 5.41179 5.49306 5.50636 5.53161 5.59210 5.88754 6.00505 6.35673 6.46100 6.58067 6.87186 7.20825 7.38759 7.94270 8.74825 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.008835 B = 0.003241 C = 0.002606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3168.381176 B = 8638.160677 C =10743.844708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.113 4.113 3 C 0.087 3.913 4 H 0.110 0.890 5 C 0.085 3.915 6 N -0.724 5.724 7 C 0.514 3.486 8 O -0.572 6.572 9 C -0.097 4.097 10 H 0.119 0.881 11 C -0.145 4.145 12 C -0.072 4.072 13 C -0.117 4.117 14 C -0.124 4.124 15 C -0.125 4.125 16 C -0.105 4.105 17 N -0.662 5.662 18 C 0.060 3.940 19 C 0.453 3.547 20 O -0.607 6.607 21 N -0.594 5.594 22 C -0.323 4.323 23 H 0.060 0.940 24 C -0.012 4.012 25 N -0.932 5.932 26 Si 0.957 3.043 27 H -0.260 1.260 28 H -0.273 1.273 29 H -0.236 1.236 30 H 0.040 0.960 31 H 0.058 0.942 32 H 0.055 0.945 33 H 0.087 0.913 34 H 0.059 0.941 35 H 0.077 0.923 36 H 0.057 0.943 37 H 0.406 0.594 38 H 0.042 0.958 39 H 0.087 0.913 40 H 0.062 0.938 41 H 0.053 0.947 42 H 0.081 0.919 43 H 0.067 0.933 44 H 0.062 0.938 45 H 0.079 0.921 46 H 0.065 0.935 47 H 0.072 0.928 48 H 0.045 0.955 49 H 0.050 0.950 50 H 0.345 0.655 51 H 0.109 0.891 52 H 0.063 0.937 53 H 0.386 0.614 54 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.149 0.283 -23.621 26.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.151 4.151 3 C -0.023 4.023 4 H 0.127 0.873 5 C -0.041 4.041 6 N -0.377 5.377 7 C 0.301 3.699 8 O -0.451 6.451 9 C -0.118 4.118 10 H 0.137 0.863 11 C -0.203 4.203 12 C -0.091 4.091 13 C -0.154 4.154 14 C -0.161 4.161 15 C -0.162 4.162 16 C -0.142 4.142 17 N -0.294 5.294 18 C -0.073 4.073 19 C 0.240 3.760 20 O -0.491 6.491 21 N -0.235 5.235 22 C -0.453 4.453 23 H 0.078 0.922 24 C -0.210 4.210 25 N -0.573 5.573 26 Si 0.778 3.222 27 H -0.185 1.185 28 H -0.198 1.198 29 H -0.159 1.159 30 H 0.059 0.941 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.106 0.894 34 H 0.078 0.922 35 H 0.095 0.905 36 H 0.076 0.924 37 H 0.243 0.757 38 H 0.061 0.939 39 H 0.106 0.894 40 H 0.081 0.919 41 H 0.072 0.928 42 H 0.100 0.900 43 H 0.086 0.914 44 H 0.080 0.920 45 H 0.098 0.902 46 H 0.084 0.916 47 H 0.091 0.909 48 H 0.064 0.936 49 H 0.069 0.931 50 H 0.165 0.835 51 H 0.126 0.874 52 H 0.081 0.919 53 H 0.221 0.779 54 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 11.547 -0.125 -23.494 26.178 hybrid contribution 0.992 -0.152 1.005 1.420 sum 12.539 -0.277 -22.488 25.749 Atomic orbital electron populations 1.21574 0.95107 1.01146 1.01806 1.21539 0.96772 0.93981 1.02815 1.22035 0.90191 0.97491 0.92618 0.87258 1.22122 0.96267 0.83290 1.02419 1.46013 1.07343 1.09934 1.74384 1.21122 0.81980 0.92073 0.74708 1.90676 1.56357 1.47717 1.50360 1.21494 0.97084 0.92123 1.01073 0.86313 1.21814 1.01693 1.02241 0.94525 1.21565 0.92359 0.97290 0.97918 1.22472 0.98093 0.94820 1.00013 1.22509 0.97556 1.00125 0.95911 1.22415 0.99566 0.96486 0.97742 1.22027 0.99215 0.97675 0.95317 1.60200 1.61124 1.07697 1.00373 1.21628 0.97216 1.00216 0.88209 1.20861 0.84217 0.85772 0.85116 1.90542 1.37349 1.34047 1.87117 1.42077 1.41415 1.34500 1.05540 1.18997 1.24671 1.17206 0.84400 0.92211 1.26003 1.00134 1.01001 0.93900 1.69788 1.45166 1.43530 0.98822 0.85473 0.78572 0.78513 0.79687 1.18452 1.19830 1.15939 0.94077 0.92275 0.92550 0.89413 0.92219 0.90507 0.92440 0.75712 0.93917 0.89434 0.91899 0.92846 0.90018 0.91417 0.91956 0.90222 0.91641 0.90885 0.93623 0.93078 0.83509 0.87360 0.91879 0.77908 0.91171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.68 9.71 71.98 0.70 -1.98 16 2 C -0.11 -1.92 5.28 30.59 0.16 -1.76 16 3 C 0.09 1.54 2.73 44.92 0.12 1.67 16 4 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 5 C 0.08 1.61 4.47 86.38 0.39 1.99 16 6 N -0.72 -13.82 5.21 -463.05 -2.41 -16.23 16 7 C 0.51 11.73 6.55 87.66 0.57 12.31 16 8 O -0.57 -17.18 14.71 -3.00 -0.04 -17.23 16 9 C -0.10 -1.72 2.01 -11.54 -0.02 -1.74 16 10 H 0.12 1.58 8.13 -2.39 -0.02 1.56 16 11 C -0.15 -2.67 8.88 71.98 0.64 -2.03 16 12 C -0.07 -1.37 2.12 -10.07 -0.02 -1.39 16 13 C -0.12 -1.66 5.30 31.69 0.17 -1.49 16 14 C -0.12 -1.63 6.91 31.91 0.22 -1.41 16 15 C -0.12 -1.79 6.83 31.67 0.22 -1.58 16 16 C -0.10 -2.03 5.10 31.32 0.16 -1.87 16 17 N -0.66 -16.91 5.38 -495.56 -2.66 -19.57 16 18 C 0.06 1.79 5.32 85.56 0.46 2.25 16 19 C 0.45 19.95 7.82 87.66 0.69 20.64 16 20 O -0.61 -32.24 15.83 -3.07 -0.05 -32.29 16 21 N -0.59 -28.02 5.09 -306.99 -1.56 -29.59 16 22 C -0.32 -18.83 10.16 84.04 0.85 -17.97 16 23 H 0.06 4.11 7.39 -2.91 -0.02 4.09 16 24 C -0.01 -0.64 5.50 84.92 0.47 -0.17 16 25 N -0.93 -56.11 13.96 21.66 0.30 -55.81 16 26 Si 0.96 39.57 27.74 68.60 1.90 41.47 16 27 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 28 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 29 H -0.24 -8.40 6.52 99.48 0.65 -7.75 16 30 H 0.04 1.05 7.85 -2.39 -0.02 1.03 16 31 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.09 1.13 8.14 -2.38 -0.02 1.11 16 34 H 0.06 1.11 6.36 -2.39 -0.02 1.09 16 35 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.06 1.29 6.69 -2.38 -0.02 1.27 16 37 H 0.41 6.53 6.66 -92.71 -0.62 5.92 16 38 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.09 1.31 7.22 -2.38 -0.02 1.30 16 40 H 0.06 1.15 7.58 -2.39 -0.02 1.13 16 41 H 0.05 1.26 8.12 -2.39 -0.02 1.24 16 42 H 0.08 0.96 7.72 -2.39 -0.02 0.94 16 43 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 44 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 45 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 46 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 47 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 48 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 49 H 0.05 1.06 6.95 -2.39 -0.02 1.05 16 50 H 0.35 8.94 7.24 -89.69 -0.65 8.29 16 51 H 0.11 2.92 6.30 -2.38 -0.02 2.91 16 52 H 0.06 1.75 6.41 -2.39 -0.02 1.74 16 53 H 0.39 15.57 5.76 -92.71 -0.53 15.03 16 54 H 0.28 15.37 8.31 -92.71 -0.77 14.60 16 Total: -1.00 -76.33 415.73 0.28 -76.04 By element: Atomic # 1 Polarization: 48.70 SS G_CDS: -0.95 Total: 47.75 kcal Atomic # 6 Polarization: -0.31 SS G_CDS: 5.77 Total: 5.46 kcal Atomic # 7 Polarization: -114.86 SS G_CDS: -6.34 Total: -121.20 kcal Atomic # 8 Polarization: -49.42 SS G_CDS: -0.09 Total: -49.52 kcal Atomic # 14 Polarization: 39.57 SS G_CDS: 1.90 Total: 41.47 kcal Total: -76.33 0.28 -76.04 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269492345.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.517 kcal (2) G-P(sol) polarization free energy of solvation -76.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds