Wall clock time and date at job start Sat Apr 11 2020 05:50:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47291 * 2 1 4 4 H 1.08996 * 109.47131 * 305.56313 * 3 2 1 5 5 N 1.46508 * 109.46911 * 65.55622 * 3 2 1 6 6 C 1.34764 * 120.00153 * 275.00077 * 5 3 2 7 7 C 1.50704 * 120.00210 * 179.97438 * 6 5 3 8 8 O 1.21287 * 120.00160 * 0.02562 * 6 5 3 9 9 C 1.50698 * 109.47363 * 185.55590 * 3 2 1 10 10 O 1.21280 * 120.00403 * 263.18586 * 9 3 2 11 11 N 1.34780 * 119.99774 * 82.91316 * 9 3 2 12 12 C 1.46925 * 120.62634 * 174.84043 * 11 9 3 13 13 C 1.52763 * 109.00443 * 233.58207 * 12 11 9 14 14 C 1.53045 * 109.38613 * 305.58878 * 13 12 11 15 15 C 1.52995 * 109.45889 * 181.25916 * 14 13 12 16 16 N 1.46502 * 109.47027 * 64.71492 * 15 14 13 17 17 C 1.36934 * 119.99940 * 264.91723 * 16 15 14 18 18 H 1.07993 * 120.00165 * 8.61083 * 17 16 15 19 19 C 1.38821 * 119.99935 * 188.60144 * 17 16 15 20 20 N 1.31619 * 119.99437 * 30.90799 * 19 17 16 21 21 Si 1.86797 * 120.00012 * 210.90242 * 19 17 16 22 22 H 1.48497 * 109.46719 * 94.99783 * 21 19 17 23 23 H 1.48497 * 109.46960 * 214.99683 * 21 19 17 24 24 H 1.48499 * 109.47122 * 334.99787 * 21 19 17 25 25 C 1.46502 * 119.99966 * 84.92542 * 16 15 14 26 26 C 1.52993 * 109.47502 * 84.74757 * 25 16 15 27 27 C 1.53041 * 109.53171 * 61.24143 * 14 13 12 28 28 C 1.46918 * 120.62992 * 355.12034 * 11 9 3 29 29 H 1.08997 * 109.47032 * 299.99411 * 1 2 3 30 30 H 1.09001 * 109.47212 * 60.00090 * 1 2 3 31 31 H 1.09001 * 109.46726 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47232 * 240.00081 * 2 1 3 33 33 H 1.08995 * 109.47167 * 120.00602 * 2 1 3 34 34 H 0.97001 * 119.99523 * 95.00244 * 5 3 2 35 35 H 1.08996 * 109.46798 * 0.02562 * 7 6 5 36 36 H 1.08999 * 109.47096 * 119.99958 * 7 6 5 37 37 H 1.09003 * 109.47563 * 239.99899 * 7 6 5 38 38 H 1.08997 * 109.58973 * 353.41581 * 12 11 9 39 39 H 1.09000 * 109.58580 * 113.84639 * 12 11 9 40 40 H 1.09007 * 109.56569 * 185.55536 * 13 12 11 41 41 H 1.09005 * 109.36238 * 65.50089 * 13 12 11 42 42 H 1.08994 * 109.45885 * 301.21797 * 14 13 12 43 43 H 1.09004 * 109.46929 * 184.71498 * 15 14 13 44 44 H 1.08998 * 109.47606 * 304.71542 * 15 14 13 45 45 H 0.97001 * 119.99259 * 179.97438 * 20 19 17 46 46 H 1.09002 * 109.47235 * 204.75044 * 25 16 15 47 47 H 1.09006 * 109.46961 * 324.74671 * 25 16 15 48 48 H 1.09000 * 109.47468 * 183.10851 * 26 25 16 49 49 H 1.09002 * 109.47206 * 303.10446 * 26 25 16 50 50 H 1.09004 * 109.47329 * 63.10961 * 26 25 16 51 51 H 1.09010 * 109.49149 * 178.68425 * 27 14 13 52 52 H 1.09000 * 109.52819 * 58.60743 * 27 14 13 53 53 H 1.09004 * 109.58828 * 246.15293 * 28 11 9 54 54 H 1.09001 * 109.58967 * 6.43734 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5976 1.9842 -0.8359 5 7 1.6639 2.0934 1.2575 6 6 0.4478 2.6598 1.3856 7 6 0.0607 3.3289 2.6794 8 8 -0.3355 2.6304 0.4601 9 6 3.5407 1.4447 -0.1376 10 8 4.2400 1.5365 0.8491 11 7 4.1058 1.3391 -1.3566 12 6 5.5616 1.4528 -1.5191 13 6 5.8631 2.5219 -2.5679 14 6 5.1098 2.1935 -3.8591 15 6 5.4352 3.2460 -4.9207 16 7 6.8573 3.1695 -5.2644 17 6 7.7571 3.9937 -4.6431 18 1 7.4453 4.5997 -3.8053 19 6 9.0702 4.0502 -5.0900 20 7 9.3411 3.8533 -6.3628 21 14 10.4525 4.4056 -3.8848 22 1 11.0407 3.1257 -3.4149 23 1 11.5003 5.2143 -4.5580 24 1 9.9152 5.1594 -2.7236 25 6 7.3166 2.2113 -6.2729 26 6 7.1576 2.8220 -7.6666 27 6 3.6038 2.1927 -3.5867 28 6 3.2772 1.1143 -2.5488 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 2.2903 2.1166 1.9978 35 1 0.8860 3.2552 3.3876 36 1 -0.1643 4.3789 2.4922 37 1 -0.8193 2.8370 3.0938 38 1 6.0143 1.7370 -0.5692 39 1 5.9682 0.4967 -1.8487 40 1 6.9344 2.5454 -2.7678 41 1 5.5405 3.4943 -2.1958 42 1 5.4147 1.2103 -4.2173 43 1 4.8355 3.0606 -5.8119 44 1 5.2087 4.2381 -4.5303 45 1 10.2586 3.8931 -6.6751 46 1 8.3660 1.9743 -6.0976 47 1 6.7222 1.3000 -6.2056 48 1 7.4473 2.0893 -8.4197 49 1 6.1176 3.1096 -7.8208 50 1 7.7946 3.7024 -7.7524 51 1 3.0670 1.9818 -4.5118 52 1 3.3020 3.1681 -3.2053 53 1 3.4938 0.1300 -2.9641 54 1 2.2231 1.1726 -2.2776 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274955990.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:50:22 Heat of formation + Delta-G solvation = -73.050258 kcal Electronic energy + Delta-G solvation = -31430.619043 eV Core-core repulsion = 27402.207749 eV Total energy + Delta-G solvation = -4028.411293 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -41.84771 -40.46917 -39.10515 -37.48022 -36.46914 -34.67989 -33.62022 -32.79248 -32.12441 -30.98403 -30.58175 -28.62482 -27.64623 -25.54980 -24.19338 -24.12959 -23.03319 -22.23705 -21.58488 -21.03184 -20.10645 -18.63187 -18.50515 -17.88301 -17.21256 -16.92478 -16.87591 -16.35058 -16.06526 -15.74037 -15.53638 -15.11890 -14.97246 -14.89441 -14.82535 -14.50140 -14.34895 -14.08684 -13.76523 -13.62829 -13.54276 -13.34653 -13.16953 -13.04409 -12.99117 -12.84432 -12.69036 -12.53491 -12.48592 -12.35190 -12.15244 -11.99601 -11.89948 -11.84716 -11.77478 -11.32827 -11.28474 -11.06056 -10.93506 -10.81142 -10.30441 -10.14872 -9.72223 -8.75918 -7.79638 -5.03097 1.34208 1.46010 1.52158 1.56627 1.63350 1.75799 2.36214 2.57046 3.23950 3.26779 3.66789 3.80718 3.85297 3.95264 3.96789 3.99657 4.11902 4.20546 4.32812 4.38554 4.45877 4.49096 4.53692 4.62000 4.66635 4.71251 4.77444 4.82449 4.83339 4.90932 4.98344 4.99868 5.01464 5.05814 5.09623 5.11124 5.15887 5.20980 5.26679 5.29750 5.33842 5.42066 5.43691 5.61050 5.64435 5.70889 5.79480 6.22324 6.30349 6.39137 6.50251 6.94953 7.20524 7.27123 8.00414 8.40987 9.22610 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.017310 B = 0.002652 C = 0.002486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.189674 B =10555.285784 C =11262.318865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.123 4.123 3 C 0.130 3.870 4 H 0.109 0.891 5 N -0.712 5.712 6 C 0.509 3.491 7 C -0.165 4.165 8 O -0.577 6.577 9 C 0.511 3.489 10 O -0.575 6.575 11 N -0.599 5.599 12 C 0.119 3.881 13 C -0.111 4.111 14 C -0.093 4.093 15 C 0.156 3.844 16 N -0.607 5.607 17 C -0.242 4.242 18 H 0.067 0.933 19 C -0.045 4.045 20 N -0.909 5.909 21 Si 0.932 3.068 22 H -0.293 1.293 23 H -0.303 1.303 24 H -0.277 1.277 25 C 0.175 3.825 26 C -0.147 4.147 27 C -0.123 4.123 28 C 0.103 3.897 29 H 0.046 0.954 30 H 0.054 0.946 31 H 0.065 0.935 32 H 0.091 0.909 33 H 0.070 0.930 34 H 0.414 0.586 35 H 0.095 0.905 36 H 0.101 0.899 37 H 0.107 0.893 38 H 0.072 0.928 39 H 0.075 0.925 40 H 0.068 0.932 41 H 0.041 0.959 42 H 0.065 0.935 43 H 0.044 0.956 44 H 0.034 0.966 45 H 0.244 0.756 46 H 0.043 0.957 47 H 0.030 0.970 48 H 0.033 0.967 49 H 0.022 0.978 50 H 0.065 0.935 51 H 0.096 0.904 52 H 0.057 0.943 53 H 0.092 0.908 54 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.303 -8.505 13.559 25.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.162 4.162 3 C 0.021 3.979 4 H 0.127 0.873 5 N -0.367 5.367 6 C 0.298 3.702 7 C -0.225 4.225 8 O -0.457 6.457 9 C 0.299 3.701 10 O -0.455 6.455 11 N -0.330 5.330 12 C -0.003 4.003 13 C -0.150 4.150 14 C -0.114 4.114 15 C 0.030 3.970 16 N -0.329 5.329 17 C -0.371 4.371 18 H 0.085 0.915 19 C -0.241 4.241 20 N -0.556 5.556 21 Si 0.762 3.238 22 H -0.220 1.220 23 H -0.231 1.231 24 H -0.202 1.202 25 C 0.049 3.951 26 C -0.207 4.207 27 C -0.161 4.161 28 C -0.019 4.019 29 H 0.065 0.935 30 H 0.073 0.927 31 H 0.084 0.916 32 H 0.109 0.891 33 H 0.089 0.911 34 H 0.251 0.749 35 H 0.114 0.886 36 H 0.120 0.880 37 H 0.126 0.874 38 H 0.090 0.910 39 H 0.094 0.906 40 H 0.086 0.914 41 H 0.060 0.940 42 H 0.083 0.917 43 H 0.063 0.937 44 H 0.053 0.947 45 H 0.054 0.946 46 H 0.061 0.939 47 H 0.048 0.952 48 H 0.052 0.948 49 H 0.041 0.959 50 H 0.083 0.917 51 H 0.114 0.886 52 H 0.076 0.924 53 H 0.110 0.890 54 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -19.341 -8.451 13.337 24.967 hybrid contribution 1.790 0.611 0.524 1.962 sum -17.551 -7.840 13.861 23.699 Atomic orbital electron populations 1.21719 0.93726 1.01579 1.02271 1.21876 0.97580 0.92773 1.03932 1.20900 0.89918 0.97044 0.89988 0.87342 1.46026 1.17330 1.57464 1.15881 1.21451 0.80446 0.77144 0.91161 1.21883 1.04885 1.02544 0.93138 1.90719 1.51484 1.60433 1.43103 1.20908 0.90793 0.75529 0.82877 1.90658 1.64873 1.51966 1.38012 1.48184 1.07947 1.69873 1.07043 1.21479 0.79704 0.99588 0.99517 1.21674 1.01530 0.97055 0.94707 1.21581 0.94530 1.00062 0.95225 1.20868 0.84103 0.96506 0.95569 1.44326 1.02822 1.40631 1.45146 1.19325 0.90211 1.19153 1.08451 0.91478 1.25137 0.99592 1.03012 0.96345 1.70301 1.17836 1.55224 1.12257 0.85764 0.80885 0.76918 0.80198 1.22049 1.23068 1.20238 1.20488 0.97525 0.89244 0.87808 1.22233 0.98636 1.02115 0.97673 1.21899 0.95494 0.99000 0.99741 1.22101 0.95438 0.99967 0.84356 0.93513 0.92718 0.91625 0.89102 0.91101 0.74861 0.88568 0.88000 0.87404 0.90970 0.90634 0.91362 0.94034 0.91655 0.93728 0.94746 0.94594 0.93888 0.95223 0.94814 0.95874 0.91652 0.88604 0.92390 0.88963 0.87793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.19 8.53 71.98 0.61 -1.57 16 2 C -0.12 -1.92 5.32 30.59 0.16 -1.76 16 3 C 0.13 2.51 1.79 44.24 0.08 2.59 16 4 H 0.11 2.19 6.05 -2.39 -0.01 2.18 16 5 N -0.71 -12.82 5.01 -446.10 -2.23 -15.06 16 6 C 0.51 9.18 6.53 87.66 0.57 9.75 16 7 C -0.17 -1.60 10.39 71.24 0.74 -0.86 16 8 O -0.58 -14.32 14.24 -3.05 -0.04 -14.36 16 9 C 0.51 12.45 6.91 87.66 0.61 13.05 16 10 O -0.58 -17.53 15.41 -3.03 -0.05 -17.58 16 11 N -0.60 -13.96 2.98 -819.75 -2.44 -16.40 16 12 C 0.12 3.32 6.39 86.22 0.55 3.87 16 13 C -0.11 -3.59 4.98 30.53 0.15 -3.44 16 14 C -0.09 -2.72 2.36 -10.77 -0.03 -2.74 16 15 C 0.16 5.70 5.16 86.38 0.45 6.14 16 16 N -0.61 -27.83 2.31 -702.00 -1.62 -29.45 16 17 C -0.24 -12.50 7.92 84.04 0.67 -11.83 16 18 H 0.07 3.49 7.98 -2.91 -0.02 3.47 16 19 C -0.05 -2.44 4.71 84.86 0.40 -2.04 16 20 N -0.91 -50.84 8.82 21.65 0.19 -50.65 16 21 Si 0.93 44.33 29.65 68.60 2.03 46.36 16 22 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 23 H -0.30 -14.72 7.11 99.48 0.71 -14.01 16 24 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 25 C 0.17 7.94 5.63 86.38 0.49 8.42 16 26 C -0.15 -6.55 9.82 71.98 0.71 -5.84 16 27 C -0.12 -2.62 5.36 30.67 0.16 -2.45 16 28 C 0.10 1.82 5.69 86.36 0.49 2.31 16 29 H 0.05 0.87 5.63 -2.39 -0.01 0.85 16 30 H 0.05 0.98 7.88 -2.39 -0.02 0.96 16 31 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.09 1.18 7.18 -2.39 -0.02 1.16 16 33 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.41 6.91 7.60 -92.71 -0.70 6.21 16 35 H 0.10 0.56 7.91 -2.39 -0.02 0.54 16 36 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.07 2.23 7.04 -2.39 -0.02 2.21 16 39 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 40 H 0.07 2.67 6.53 -2.38 -0.02 2.66 16 41 H 0.04 1.43 8.14 -2.38 -0.02 1.41 16 42 H 0.07 1.94 8.07 -2.39 -0.02 1.93 16 43 H 0.04 1.53 8.05 -2.38 -0.02 1.51 16 44 H 0.03 1.33 8.00 -2.39 -0.02 1.31 16 45 H 0.24 13.51 8.31 -92.71 -0.77 12.74 16 46 H 0.04 2.23 6.13 -2.39 -0.01 2.21 16 47 H 0.03 1.18 8.04 -2.38 -0.02 1.16 16 48 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 49 H 0.02 0.93 8.08 -2.39 -0.02 0.91 16 50 H 0.06 3.41 5.96 -2.38 -0.01 3.39 16 51 H 0.10 1.69 8.14 -2.38 -0.02 1.67 16 52 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 53 H 0.09 1.36 8.14 -2.38 -0.02 1.34 16 54 H 0.10 1.45 5.08 -2.39 -0.01 1.44 16 Total: -1.00 -66.31 408.17 2.82 -63.49 By element: Atomic # 1 Polarization: 19.88 SS G_CDS: 0.18 Total: 20.06 kcal Atomic # 6 Polarization: 6.78 SS G_CDS: 6.81 Total: 13.60 kcal Atomic # 7 Polarization: -105.45 SS G_CDS: -6.11 Total: -111.56 kcal Atomic # 8 Polarization: -31.85 SS G_CDS: -0.09 Total: -31.94 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.36 kcal Total: -66.31 2.82 -63.49 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274955990.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.562 kcal (2) G-P(sol) polarization free energy of solvation -66.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds