Wall clock time and date at job start Sat Apr 11 2020 05:50:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47055 * 2 1 4 4 H 1.09000 * 109.47484 * 54.99963 * 3 2 1 5 5 C 1.53006 * 109.47325 * 295.00462 * 3 2 1 6 6 C 1.50701 * 109.47229 * 175.00348 * 3 2 1 7 7 O 1.21284 * 119.99527 * 11.85800 * 6 3 2 8 8 N 1.34775 * 119.99908 * 191.86060 * 6 3 2 9 9 C 1.46923 * 120.63287 * 4.61350 * 8 6 3 10 10 C 1.53197 * 108.89231 * 233.68206 * 9 8 6 11 11 C 1.53046 * 109.31064 * 305.29598 * 10 9 8 12 12 C 1.53039 * 109.53938 * 61.36317 * 11 10 9 13 13 C 1.47206 * 120.81036 * 184.75544 * 8 6 3 14 14 H 1.09000 * 109.68037 * 246.22365 * 13 8 6 15 15 C 1.53001 * 109.53557 * 6.53312 * 13 8 6 16 16 N 1.46501 * 109.47181 * 287.76021 * 15 13 8 17 17 C 1.34773 * 119.99862 * 184.73836 * 16 15 13 18 18 O 1.21280 * 120.00205 * 0.02562 * 17 16 15 19 19 C 1.50703 * 119.99785 * 179.97438 * 17 16 15 20 20 C 1.52999 * 109.47056 * 180.02562 * 19 17 16 21 21 N 1.46501 * 109.47134 * 180.02562 * 20 19 17 22 22 C 1.36938 * 120.00187 * 180.02562 * 21 20 19 23 23 H 1.08003 * 119.99705 * 359.97438 * 22 21 20 24 24 C 1.38809 * 120.00006 * 179.97438 * 22 21 20 25 25 N 1.31618 * 119.99953 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 119.99802 * 179.97438 * 24 22 21 27 27 H 1.48494 * 109.46829 * 90.00185 * 26 24 22 28 28 H 1.48498 * 109.47280 * 209.99968 * 26 24 22 29 29 H 1.48501 * 109.47210 * 330.00259 * 26 24 22 30 30 H 1.09007 * 109.46955 * 300.00028 * 1 2 3 31 31 H 1.08996 * 109.47662 * 59.99579 * 1 2 3 32 32 H 1.08998 * 109.47379 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.46565 * 239.99891 * 2 1 3 34 34 H 1.08996 * 109.47153 * 120.00284 * 2 1 3 35 35 H 1.08996 * 109.46993 * 66.53600 * 5 3 2 36 36 H 1.08999 * 109.47284 * 186.54128 * 5 3 2 37 37 H 1.09000 * 109.46889 * 306.53987 * 5 3 2 38 38 H 1.08994 * 109.58805 * 113.82279 * 9 8 6 39 39 H 1.09000 * 109.58743 * 353.53872 * 9 8 6 40 40 H 1.09005 * 109.49807 * 65.24193 * 10 9 8 41 41 H 1.08996 * 109.49933 * 185.31054 * 10 9 8 42 42 H 1.09004 * 109.45557 * 181.38911 * 11 10 9 43 43 H 1.09004 * 109.45554 * 301.35599 * 11 10 9 44 44 H 1.08994 * 109.49739 * 58.58942 * 12 11 10 45 45 H 1.08999 * 109.49303 * 178.68634 * 12 11 10 46 46 H 1.09002 * 109.47103 * 47.76251 * 15 13 8 47 47 H 1.09000 * 109.46994 * 167.75681 * 15 13 8 48 48 H 0.96993 * 119.99811 * 4.73844 * 16 15 13 49 49 H 1.08990 * 109.47261 * 300.00440 * 19 17 16 50 50 H 1.08998 * 109.46545 * 60.00621 * 19 17 16 51 51 H 1.09000 * 109.47376 * 300.00120 * 20 19 17 52 52 H 1.08998 * 109.47129 * 60.00742 * 20 19 17 53 53 H 0.97001 * 119.99791 * 0.02562 * 21 20 19 54 54 H 0.97000 * 119.99768 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6351 2.1266 -1.3073 6 6 3.5419 1.4443 0.1237 7 8 4.1627 0.4112 -0.0116 8 7 4.1951 2.5939 0.3849 9 6 3.4523 3.8332 0.6512 10 6 3.9540 4.9260 -0.2980 11 6 5.4716 5.0631 -0.1547 12 6 6.1434 3.7430 -0.5397 13 6 5.6664 2.6369 0.4067 14 1 6.0125 2.8474 1.4186 15 6 6.2246 1.2897 -0.0564 16 7 6.0046 0.2852 0.9871 17 6 6.5006 -0.9592 0.8398 18 8 7.1294 -1.2474 -0.1564 19 6 6.2748 -1.9923 1.9135 20 6 6.9367 -3.3089 1.5017 21 7 6.7166 -4.3133 2.5452 22 6 7.2214 -5.5775 2.3960 23 1 7.7813 -5.8342 1.5089 24 6 7.0133 -6.5291 3.3850 25 7 6.3305 -6.2164 4.4659 26 14 7.7013 -8.2538 3.1811 27 1 9.0679 -8.3131 3.7589 28 1 6.8238 -9.2232 3.8850 29 1 7.7591 -8.5962 1.7372 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 0.5506 2.2293 -1.3429 36 1 2.0955 3.1133 -1.3588 37 1 1.9710 1.5245 -2.1516 38 1 3.6157 4.1425 1.6835 39 1 2.3884 3.6645 0.4843 40 1 3.7085 4.6565 -1.3253 41 1 3.4773 5.8734 -0.0465 42 1 5.8280 5.8570 -0.8111 43 1 5.7181 5.3080 0.8784 44 1 5.8773 3.4848 -1.5647 45 1 7.2253 3.8486 -0.4599 46 1 5.7173 0.9811 -0.9705 47 1 7.2931 1.3859 -0.2487 48 1 5.5020 0.5158 1.7839 49 1 6.7104 -1.6443 2.8499 50 1 5.2045 -2.1495 2.0469 51 1 6.5013 -3.6571 0.5651 52 1 8.0070 -3.1513 1.3686 53 1 6.2134 -4.0829 3.3418 54 1 6.1848 -6.8815 5.1568 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001279337806.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:50:44 Heat of formation + Delta-G solvation = -75.348321 kcal Electronic energy + Delta-G solvation = -31194.917002 eV Core-core repulsion = 27166.406057 eV Total energy + Delta-G solvation = -4028.510945 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.97375 -40.37890 -38.55472 -37.03768 -36.68456 -35.35676 -33.88692 -33.82665 -32.63439 -30.83511 -30.44711 -27.97644 -26.42790 -25.86718 -25.24847 -23.78800 -23.35118 -22.13507 -21.58284 -21.06155 -19.65060 -19.30930 -18.27688 -17.58231 -17.19579 -17.01921 -16.67672 -16.52211 -16.20566 -15.96739 -15.41557 -15.34632 -15.28529 -15.12239 -14.84368 -14.59225 -14.37535 -14.22009 -14.02455 -13.84721 -13.60692 -13.33372 -13.15645 -13.02725 -12.94115 -12.87805 -12.59106 -12.55966 -12.42474 -12.34119 -12.16581 -12.12069 -11.91175 -11.85523 -11.73742 -11.61143 -11.57840 -11.44287 -11.00051 -10.83573 -10.15811 -9.81581 -9.39047 -9.07399 -7.99331 -5.29706 1.44888 1.47971 1.56972 1.64763 1.83486 1.97864 2.31663 2.56595 3.33470 3.41795 3.73169 3.77948 3.83557 3.87719 3.96889 4.01865 4.04810 4.13287 4.20190 4.22989 4.27059 4.37314 4.40933 4.50821 4.51888 4.58526 4.62437 4.68446 4.71443 4.72246 4.81031 4.91380 4.98095 4.98832 5.00264 5.09546 5.12402 5.12705 5.13029 5.20357 5.22935 5.25570 5.36683 5.44493 5.45365 5.50267 5.60250 5.67278 6.22959 6.46342 6.64212 7.29206 7.30163 7.39586 7.99354 8.29087 9.24208 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.014388 B = 0.002475 C = 0.002209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1945.640118 B =11312.096239 C =12671.408845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.106 4.106 3 C -0.102 4.102 4 H 0.118 0.882 5 C -0.140 4.140 6 C 0.496 3.504 7 O -0.551 6.551 8 N -0.608 5.608 9 C 0.099 3.901 10 C -0.133 4.133 11 C -0.115 4.115 12 C -0.124 4.124 13 C 0.142 3.858 14 H 0.093 0.907 15 C 0.138 3.862 16 N -0.675 5.675 17 C 0.523 3.477 18 O -0.598 6.598 19 C -0.129 4.129 20 C 0.176 3.824 21 N -0.743 5.743 22 C -0.255 4.255 23 H 0.068 0.932 24 C -0.071 4.071 25 N -0.967 5.967 26 Si 0.979 3.021 27 H -0.282 1.282 28 H -0.288 1.288 29 H -0.274 1.274 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.048 0.952 33 H 0.041 0.959 34 H 0.046 0.954 35 H 0.088 0.912 36 H 0.076 0.924 37 H 0.039 0.961 38 H 0.084 0.916 39 H 0.104 0.896 40 H 0.061 0.939 41 H 0.098 0.902 42 H 0.076 0.924 43 H 0.075 0.925 44 H 0.058 0.942 45 H 0.083 0.917 46 H 0.051 0.949 47 H 0.055 0.945 48 H 0.403 0.597 49 H 0.107 0.893 50 H 0.096 0.904 51 H 0.005 0.995 52 H 0.014 0.986 53 H 0.378 0.622 54 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.122 34.343 -8.207 37.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.144 4.144 3 C -0.123 4.123 4 H 0.136 0.864 5 C -0.197 4.197 6 C 0.285 3.715 7 O -0.428 6.428 8 N -0.343 5.343 9 C -0.023 4.023 10 C -0.171 4.171 11 C -0.152 4.152 12 C -0.163 4.163 13 C 0.039 3.961 14 H 0.111 0.889 15 C 0.014 3.986 16 N -0.324 5.324 17 C 0.310 3.690 18 O -0.480 6.480 19 C -0.169 4.169 20 C 0.049 3.951 21 N -0.386 5.386 22 C -0.387 4.387 23 H 0.086 0.914 24 C -0.264 4.264 25 N -0.617 5.617 26 Si 0.807 3.193 27 H -0.209 1.209 28 H -0.214 1.214 29 H -0.199 1.199 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.067 0.933 33 H 0.060 0.940 34 H 0.064 0.936 35 H 0.106 0.894 36 H 0.095 0.905 37 H 0.059 0.941 38 H 0.102 0.898 39 H 0.122 0.878 40 H 0.080 0.920 41 H 0.116 0.884 42 H 0.095 0.905 43 H 0.093 0.907 44 H 0.077 0.923 45 H 0.102 0.898 46 H 0.069 0.931 47 H 0.073 0.927 48 H 0.238 0.762 49 H 0.125 0.875 50 H 0.114 0.886 51 H 0.023 0.977 52 H 0.032 0.968 53 H 0.210 0.790 54 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -12.278 33.498 -9.085 36.815 hybrid contribution 0.131 -1.289 0.428 1.365 sum -12.147 32.208 -8.657 35.495 Atomic orbital electron populations 1.21785 0.93641 1.01993 1.02966 1.21302 0.96925 0.94947 1.01235 1.21356 0.90434 0.98453 1.02042 0.86434 1.21855 1.03348 1.00363 0.94177 1.21302 0.91146 0.83027 0.76030 1.90968 1.68244 1.33635 1.49981 1.48297 1.05769 1.09721 1.70512 1.22108 0.97198 0.82656 1.00313 1.21946 0.96114 0.99324 0.99732 1.21498 0.95187 0.95809 1.02739 1.21879 1.01429 0.94512 0.98492 1.21514 0.80066 0.93647 1.00917 0.88894 1.21318 0.98599 0.86645 0.92029 1.45553 1.54190 1.10183 1.22477 1.20433 0.77977 0.83608 0.87021 1.90619 1.43835 1.80636 1.32887 1.21557 1.03221 0.93600 0.98554 1.20264 0.96602 0.87653 0.90629 1.42479 1.65786 1.08919 1.21430 1.19609 1.27188 0.88919 1.02958 0.91384 1.25614 1.01722 1.02514 0.96531 1.69809 1.46502 1.35335 1.10037 0.85070 0.77540 0.79118 0.77591 1.20894 1.21355 1.19877 0.91258 0.91194 0.93322 0.93984 0.93557 0.89370 0.90539 0.94129 0.89761 0.87814 0.92011 0.88385 0.90546 0.90673 0.92344 0.89824 0.93120 0.92673 0.76157 0.87465 0.88596 0.97698 0.96827 0.78975 0.93647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 9.67 71.98 0.70 -1.31 16 2 C -0.11 -2.04 4.71 30.59 0.14 -1.89 16 3 C -0.10 -1.38 1.86 -11.54 -0.02 -1.41 16 4 H 0.12 0.97 7.07 -2.39 -0.02 0.95 16 5 C -0.14 -1.40 8.36 71.98 0.60 -0.80 16 6 C 0.50 9.51 6.54 87.66 0.57 10.08 16 7 O -0.55 -16.07 9.74 -3.04 -0.03 -16.10 16 8 N -0.61 -7.86 2.98 -794.36 -2.37 -10.23 16 9 C 0.10 0.51 5.50 86.36 0.47 0.99 16 10 C -0.13 -0.49 5.98 30.68 0.18 -0.30 16 11 C -0.11 -0.62 5.88 30.62 0.18 -0.44 16 12 C -0.12 -1.32 5.35 30.67 0.16 -1.15 16 13 C 0.14 2.07 2.91 44.92 0.13 2.21 16 14 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 15 C 0.14 3.46 4.31 86.38 0.37 3.83 16 16 N -0.67 -19.32 3.15 -463.06 -1.46 -20.78 16 17 C 0.52 20.06 7.50 87.66 0.66 20.72 16 18 O -0.60 -28.18 15.98 -3.03 -0.05 -28.23 16 19 C -0.13 -5.01 5.81 29.85 0.17 -4.84 16 20 C 0.18 8.77 5.55 86.38 0.48 9.25 16 21 N -0.74 -42.42 5.60 -343.45 -1.92 -44.34 16 22 C -0.26 -15.76 9.99 84.03 0.84 -14.92 16 23 H 0.07 4.15 7.83 -2.91 -0.02 4.12 16 24 C -0.07 -4.36 5.50 84.86 0.47 -3.89 16 25 N -0.97 -61.37 13.06 21.65 0.28 -61.09 16 26 Si 0.98 48.76 29.55 68.60 2.03 50.78 16 27 H -0.28 -13.65 7.11 99.48 0.71 -12.94 16 28 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 29 H -0.27 -13.17 7.11 99.48 0.71 -12.46 16 30 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 31 H 0.07 0.75 6.71 -2.39 -0.02 0.73 16 32 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.04 1.03 8.11 -2.39 -0.02 1.01 16 34 H 0.05 1.09 8.12 -2.39 -0.02 1.07 16 35 H 0.09 0.56 6.89 -2.39 -0.02 0.54 16 36 H 0.08 0.53 5.76 -2.39 -0.01 0.52 16 37 H 0.04 0.60 8.14 -2.39 -0.02 0.58 16 38 H 0.08 0.26 8.14 -2.39 -0.02 0.24 16 39 H 0.10 0.27 4.75 -2.39 -0.01 0.26 16 40 H 0.06 0.35 7.58 -2.38 -0.02 0.33 16 41 H 0.10 0.00 8.14 -2.39 -0.02 -0.01 16 42 H 0.08 0.34 8.14 -2.39 -0.02 0.32 16 43 H 0.07 0.31 8.14 -2.38 -0.02 0.29 16 44 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 45 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 46 H 0.05 1.60 6.43 -2.39 -0.02 1.59 16 47 H 0.06 1.46 8.10 -2.39 -0.02 1.44 16 48 H 0.40 9.68 7.99 -92.71 -0.74 8.94 16 49 H 0.11 3.69 8.14 -2.39 -0.02 3.67 16 50 H 0.10 3.60 8.14 -2.39 -0.02 3.58 16 51 H 0.00 0.27 8.10 -2.39 -0.02 0.25 16 52 H 0.01 0.72 8.10 -2.39 -0.02 0.70 16 53 H 0.38 21.84 7.67 -92.71 -0.71 21.13 16 54 H 0.25 15.45 8.31 -92.71 -0.77 14.68 16 Total: -1.00 -83.57 412.03 2.03 -81.54 By element: Atomic # 1 Polarization: 32.90 SS G_CDS: -0.56 Total: 32.34 kcal Atomic # 6 Polarization: 9.98 SS G_CDS: 6.12 Total: 16.10 kcal Atomic # 7 Polarization: -130.96 SS G_CDS: -5.47 Total: -136.43 kcal Atomic # 8 Polarization: -44.25 SS G_CDS: -0.08 Total: -44.32 kcal Atomic # 14 Polarization: 48.76 SS G_CDS: 2.03 Total: 50.78 kcal Total: -83.57 2.03 -81.54 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279337806.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.188 kcal (2) G-P(sol) polarization free energy of solvation -83.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds